Wall clock time and date at job start Mon Mar 30 2020 03:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35312 * 126.12922 * 2 1 4 4 C 1.39868 * 107.92200 * 180.02562 * 3 2 1 5 5 C 1.50706 * 125.89853 * 180.02562 * 4 3 2 6 6 H 1.08994 * 109.47305 * 324.98900 * 5 4 3 7 7 C 1.50701 * 109.46810 * 84.98344 * 5 4 3 8 8 H 1.08002 * 119.99636 * 84.69411 * 7 5 4 9 9 C 1.37874 * 120.00279 * 264.69179 * 7 5 4 10 10 N 1.31513 * 120.00115 * 5.04329 * 9 7 5 11 11 Si 1.86803 * 119.99972 * 185.04593 * 9 7 5 12 12 H 1.48494 * 109.47431 * 59.99812 * 11 9 7 13 13 H 1.48502 * 109.46947 * 179.97438 * 11 9 7 14 14 H 1.48508 * 109.46904 * 299.99487 * 11 9 7 15 15 N 1.46892 * 109.47058 * 204.98268 * 5 4 3 16 16 C 1.48539 * 111.00151 * 60.56176 * 15 5 4 17 17 C 1.54933 * 103.22991 * 159.72057 * 16 15 5 18 18 C 1.54599 * 102.92042 * 322.58083 * 17 16 15 19 19 C 1.47904 * 111.00163 * 177.94964 * 15 5 4 20 20 N 1.30832 * 108.20273 * 0.02562 * 4 3 2 21 21 N 1.34950 * 126.12622 * 180.02562 * 2 1 3 22 22 H 0.97003 * 126.03499 * 359.95956 * 21 2 1 23 23 H 1.08999 * 109.47432 * 89.99832 * 1 2 3 24 24 H 1.09000 * 109.47248 * 209.99942 * 1 2 3 25 25 H 1.09003 * 109.47440 * 329.99920 * 1 2 3 26 26 H 1.08004 * 126.03625 * 0.02584 * 3 2 1 27 27 H 0.96998 * 120.00023 * 180.02562 * 10 9 7 28 28 H 1.09006 * 110.66371 * 278.15409 * 16 15 5 29 29 H 1.08999 * 110.66846 * 41.28002 * 16 15 5 30 30 H 1.08999 * 110.71935 * 204.22908 * 17 16 15 31 31 H 1.08997 * 110.72570 * 80.94358 * 17 16 15 32 32 H 1.08999 * 110.30728 * 263.04283 * 18 17 16 33 33 H 1.08999 * 110.31062 * 140.87590 * 18 17 16 34 34 H 1.08998 * 109.91756 * 333.51588 * 19 15 5 35 35 H 1.09007 * 109.91402 * 94.80431 * 19 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6334 0.6559 -0.0006 5 6 4.8543 1.5395 -0.0003 6 1 4.6550 2.4347 -0.5892 7 6 5.1886 1.9336 1.4153 8 1 5.7849 1.2774 2.0321 9 6 4.7335 3.1319 1.9232 10 7 3.9262 3.8848 1.2083 11 14 5.2635 3.6860 3.6266 12 1 6.7420 3.8179 3.6665 13 1 4.6413 4.9984 3.9360 14 1 4.8287 2.6824 4.6311 15 7 5.9868 0.8100 -0.5859 16 6 5.6981 0.4161 -1.9887 17 6 7.1065 0.1646 -2.5834 18 6 7.9639 1.2665 -1.9195 19 6 7.1928 1.6640 -0.6472 20 7 3.6333 -0.6524 -0.0015 21 7 2.3026 -1.0900 -0.0005 22 1 2.0054 -2.0134 -0.0003 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.9740 2.1210 0.0004 27 1 3.6063 4.7280 1.5654 28 1 5.1002 -0.4950 -2.0172 29 1 5.1950 1.2243 -2.5195 30 1 7.0949 0.2852 -3.6666 31 1 7.4702 -0.8254 -2.3083 32 1 8.0611 2.1233 -2.5862 33 1 8.9473 0.8752 -1.6590 34 1 6.9024 2.7132 -0.7016 35 1 7.8139 1.4930 0.2321 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261137951.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:54 Heat of formation + Delta-G solvation = 72.990483 kcal Electronic energy + Delta-G solvation = -17003.890939 eV Core-core repulsion = 14424.176405 eV Total energy + Delta-G solvation = -2579.714534 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.16709 -37.78846 -33.61096 -31.85186 -30.79570 -29.57103 -28.01568 -26.27525 -26.11447 -23.09015 -20.58771 -19.93884 -19.39164 -18.41771 -16.47978 -16.25429 -15.05703 -15.00631 -14.19429 -14.04992 -13.04712 -12.96552 -12.78570 -12.55672 -12.27325 -12.17946 -11.85579 -11.56662 -11.33293 -10.94797 -10.67876 -10.60546 -10.52180 -10.32932 -9.92125 -9.81851 -9.50989 -9.35757 -8.56423 -8.02374 -7.55368 -7.11277 -6.06683 -4.10640 2.82890 3.32481 3.36149 3.40435 3.82838 4.02610 4.42456 5.09328 5.24990 5.39382 5.45720 5.48413 5.51641 5.70218 5.79369 6.00656 6.08414 6.17253 6.17943 6.37013 6.43983 6.61831 6.74069 6.75664 6.90197 6.92109 7.04052 7.16255 7.39055 7.66303 7.86354 8.04790 8.19241 8.28670 8.53180 8.88313 9.10135 9.54938 11.00044 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.014229 B = 0.013386 C = 0.007571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.375968 B = 2091.258311 C = 3697.358409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.045 3.955 3 C -0.239 4.239 4 C 0.131 3.869 5 C 0.268 3.732 6 H 0.050 0.950 7 C -0.494 4.494 8 H 0.064 0.936 9 C 0.068 3.932 10 N -0.885 5.885 11 Si 0.897 3.103 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.277 1.277 15 N -0.507 5.507 16 C 0.036 3.964 17 C -0.121 4.121 18 C -0.133 4.133 19 C 0.057 3.943 20 N -0.298 5.298 21 N -0.505 5.505 22 H 0.421 0.579 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.078 0.922 26 H 0.143 0.857 27 H 0.263 0.737 28 H 0.074 0.926 29 H 0.028 0.972 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.103 -4.785 -5.266 7.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.082 4.082 3 C -0.269 4.269 4 C -0.036 4.036 5 C 0.159 3.841 6 H 0.067 0.933 7 C -0.533 4.533 8 H 0.082 0.918 9 C -0.136 4.136 10 N -0.522 5.522 11 Si 0.725 3.275 12 H -0.200 1.200 13 H -0.213 1.213 14 H -0.202 1.202 15 N -0.232 5.232 16 C -0.093 4.093 17 C -0.159 4.159 18 C -0.171 4.171 19 C -0.071 4.071 20 N -0.121 5.121 21 N -0.212 5.212 22 H 0.262 0.738 23 H 0.087 0.913 24 H 0.078 0.922 25 H 0.097 0.903 26 H 0.161 0.839 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.419 -6.071 -4.928 7.947 hybrid contribution -0.802 1.354 0.607 1.686 sum -2.220 -4.717 -4.321 6.771 Atomic orbital electron populations 1.20282 0.88764 1.02847 1.02139 1.20892 0.93677 0.88654 1.04978 1.21204 0.92273 0.98639 1.14819 1.23093 0.96453 0.90642 0.93435 1.18121 0.81585 0.87957 0.96394 0.93290 1.20855 1.32645 1.03197 0.96612 0.91799 1.24992 0.94452 0.96358 0.97750 1.69925 1.31849 1.12913 1.37519 0.86570 0.79013 0.77673 0.84270 1.20033 1.21297 1.20219 1.64775 1.04859 1.39091 1.14426 1.23145 0.95641 0.99870 0.90615 1.22443 0.96188 0.99012 0.98297 1.22462 0.98913 0.98077 0.97667 1.22500 0.92428 0.96136 0.96074 1.77430 0.93805 1.13552 1.27283 1.46359 1.05222 1.06922 1.62743 0.73765 0.91325 0.92190 0.90304 0.83920 0.92702 0.90773 0.95359 0.92481 0.91520 0.92513 0.92077 0.93805 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.43 36.00 0.38 -0.71 16 2 C 0.04 0.85 7.21 -82.27 -0.59 0.26 16 3 C -0.24 -5.51 10.65 -40.01 -0.43 -5.94 16 4 C 0.13 3.26 5.38 -82.41 -0.44 2.82 16 5 C 0.27 6.92 1.71 -70.02 -0.12 6.80 16 6 H 0.05 1.39 7.22 -51.93 -0.38 1.01 16 7 C -0.49 -13.66 7.75 -34.44 -0.27 -13.93 16 8 H 0.06 1.84 7.82 -52.49 -0.41 1.43 16 9 C 0.07 1.86 5.45 -17.82 -0.10 1.76 16 10 N -0.88 -24.49 12.84 55.43 0.71 -23.78 16 11 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 15 N -0.51 -11.72 4.95 -225.28 -1.11 -12.84 16 16 C 0.04 0.72 5.72 -1.90 -0.01 0.71 16 17 C -0.12 -2.01 7.06 -24.87 -0.18 -2.19 16 18 C -0.13 -2.22 6.93 -25.37 -0.18 -2.40 16 19 C 0.06 1.19 5.91 -2.76 -0.02 1.17 16 20 N -0.30 -6.99 11.50 33.67 0.39 -6.60 16 21 N -0.50 -9.60 7.36 33.47 0.25 -9.36 16 22 H 0.42 6.28 8.96 -182.61 -1.64 4.65 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.14 3.41 8.06 -52.48 -0.42 2.98 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.07 1.55 7.25 -51.93 -0.38 1.18 16 29 H 0.03 0.59 7.99 -51.93 -0.41 0.17 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.04 0.98 7.70 -51.93 -0.40 0.58 16 35 H 0.07 1.46 8.14 -51.92 -0.42 1.04 16 LS Contribution 290.15 15.07 4.37 4.37 Total: -1.00 -30.34 290.15 -8.92 -39.27 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.55 Total: 4.31 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -1.95 Total: -11.65 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: 0.23 Total: -52.57 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.34 -8.92 -39.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137951.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.257 kcal (2) G-P(sol) polarization free energy of solvation -30.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds