Wall clock time and date at job start Mon Mar 30 2020 03:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35312 * 126.12922 * 2 1 4 4 C 1.39868 * 107.92200 * 180.02562 * 3 2 1 5 5 C 1.50706 * 125.89853 * 180.02562 * 4 3 2 6 6 H 1.08994 * 109.47305 * 324.98900 * 5 4 3 7 7 C 1.50701 * 109.46810 * 84.98344 * 5 4 3 8 8 H 1.08002 * 119.99636 * 84.69411 * 7 5 4 9 9 C 1.37874 * 120.00279 * 264.69179 * 7 5 4 10 10 N 1.31513 * 120.00115 * 5.04329 * 9 7 5 11 11 Si 1.86803 * 119.99972 * 185.04593 * 9 7 5 12 12 H 1.48494 * 109.47431 * 59.99812 * 11 9 7 13 13 H 1.48502 * 109.46947 * 179.97438 * 11 9 7 14 14 H 1.48508 * 109.46904 * 299.99487 * 11 9 7 15 15 N 1.46892 * 109.47058 * 204.98268 * 5 4 3 16 16 C 1.48539 * 111.00151 * 60.56176 * 15 5 4 17 17 C 1.54933 * 103.22991 * 159.72057 * 16 15 5 18 18 C 1.54599 * 102.92042 * 322.58083 * 17 16 15 19 19 C 1.47904 * 111.00163 * 177.94964 * 15 5 4 20 20 N 1.30832 * 108.20273 * 0.02562 * 4 3 2 21 21 N 1.34950 * 126.12622 * 180.02562 * 2 1 3 22 22 H 0.97003 * 126.03499 * 359.95956 * 21 2 1 23 23 H 1.08999 * 109.47432 * 89.99832 * 1 2 3 24 24 H 1.09000 * 109.47248 * 209.99942 * 1 2 3 25 25 H 1.09003 * 109.47440 * 329.99920 * 1 2 3 26 26 H 1.08004 * 126.03625 * 0.02584 * 3 2 1 27 27 H 0.96998 * 120.00023 * 180.02562 * 10 9 7 28 28 H 1.09006 * 110.66371 * 278.15409 * 16 15 5 29 29 H 1.08999 * 110.66846 * 41.28002 * 16 15 5 30 30 H 1.08999 * 110.71935 * 204.22908 * 17 16 15 31 31 H 1.08997 * 110.72570 * 80.94358 * 17 16 15 32 32 H 1.08999 * 110.30728 * 263.04283 * 18 17 16 33 33 H 1.08999 * 110.31062 * 140.87590 * 18 17 16 34 34 H 1.08998 * 109.91756 * 333.51588 * 19 15 5 35 35 H 1.09007 * 109.91402 * 94.80431 * 19 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6334 0.6559 -0.0006 5 6 4.8543 1.5395 -0.0003 6 1 4.6550 2.4347 -0.5892 7 6 5.1886 1.9336 1.4153 8 1 5.7849 1.2774 2.0321 9 6 4.7335 3.1319 1.9232 10 7 3.9262 3.8848 1.2083 11 14 5.2635 3.6860 3.6266 12 1 6.7420 3.8179 3.6665 13 1 4.6413 4.9984 3.9360 14 1 4.8287 2.6824 4.6311 15 7 5.9868 0.8100 -0.5859 16 6 5.6981 0.4161 -1.9887 17 6 7.1065 0.1646 -2.5834 18 6 7.9639 1.2665 -1.9195 19 6 7.1928 1.6640 -0.6472 20 7 3.6333 -0.6524 -0.0015 21 7 2.3026 -1.0900 -0.0005 22 1 2.0054 -2.0134 -0.0003 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.9740 2.1210 0.0004 27 1 3.6063 4.7280 1.5654 28 1 5.1002 -0.4950 -2.0172 29 1 5.1950 1.2243 -2.5195 30 1 7.0949 0.2852 -3.6666 31 1 7.4702 -0.8254 -2.3083 32 1 8.0611 2.1233 -2.5862 33 1 8.9473 0.8752 -1.6590 34 1 6.9024 2.7132 -0.7016 35 1 7.8139 1.4930 0.2321 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261137951.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:54 Heat of formation + Delta-G solvation = 51.701052 kcal Electronic energy + Delta-G solvation = -17004.814118 eV Core-core repulsion = 14424.176405 eV Total energy + Delta-G solvation = -2580.637713 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.86372 -39.44964 -35.49054 -33.61170 -32.37879 -31.22982 -29.62304 -28.19923 -27.55838 -25.02525 -22.20641 -21.48142 -21.04893 -20.22629 -18.40138 -18.00275 -16.85544 -16.58697 -15.98751 -15.60727 -14.80672 -14.46674 -14.41340 -14.28890 -13.84984 -13.46130 -13.41087 -13.23304 -12.94217 -12.82545 -12.46950 -12.22694 -12.07189 -11.94076 -11.82187 -11.43095 -11.31439 -11.12087 -10.64838 -9.78592 -9.24303 -8.96858 -8.14309 -6.26381 1.19849 1.40476 1.42017 1.49989 2.17931 2.31164 2.43913 3.15179 3.48704 3.92907 3.99177 4.07994 4.23886 4.26864 4.46224 4.50758 4.75281 4.79900 4.94094 4.97474 5.06432 5.07611 5.14056 5.14939 5.25081 5.28109 5.32712 5.45557 5.51930 5.70130 5.85707 6.17028 6.35592 6.62396 6.77622 6.90201 7.20874 7.42866 8.91274 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.014229 B = 0.013386 C = 0.007571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.375968 B = 2091.258311 C = 3697.358409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.080 3.920 3 C -0.289 4.289 4 C 0.110 3.890 5 C 0.277 3.723 6 H 0.011 0.989 7 C -0.511 4.511 8 H 0.045 0.955 9 C 0.027 3.973 10 N -0.906 5.906 11 Si 0.956 3.044 12 H -0.268 1.268 13 H -0.277 1.277 14 H -0.278 1.278 15 N -0.520 5.520 16 C 0.036 3.964 17 C -0.109 4.109 18 C -0.122 4.122 19 C 0.053 3.947 20 N -0.324 5.324 21 N -0.486 5.486 22 H 0.443 0.557 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.123 0.877 27 H 0.265 0.735 28 H 0.065 0.935 29 H 0.015 0.985 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.016 0.984 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.552 -6.141 -5.623 8.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.049 4.049 3 C -0.319 4.319 4 C -0.057 4.057 5 C 0.167 3.833 6 H 0.028 0.972 7 C -0.550 4.550 8 H 0.063 0.937 9 C -0.174 4.174 10 N -0.544 5.544 11 Si 0.781 3.219 12 H -0.193 1.193 13 H -0.202 1.202 14 H -0.204 1.204 15 N -0.245 5.245 16 C -0.092 4.092 17 C -0.147 4.147 18 C -0.160 4.160 19 C -0.075 4.075 20 N -0.147 5.147 21 N -0.196 5.196 22 H 0.288 0.712 23 H 0.113 0.887 24 H 0.111 0.889 25 H 0.101 0.899 26 H 0.141 0.859 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.033 0.967 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.035 0.965 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.855 -7.452 -5.295 9.328 hybrid contribution -0.756 1.693 0.683 1.976 sum -2.611 -5.759 -4.611 7.826 Atomic orbital electron populations 1.20492 0.84132 1.04687 1.04410 1.21526 0.96068 0.86928 1.00424 1.21202 0.92630 0.99153 1.18943 1.22932 0.96708 0.91281 0.94750 1.17780 0.83138 0.87339 0.95024 0.97150 1.20929 1.32972 1.03580 0.97550 0.93684 1.25666 0.94358 0.96265 1.01141 1.70036 1.32385 1.13092 1.38890 0.85659 0.78922 0.77395 0.79944 1.19340 1.20236 1.20364 1.64706 1.04613 1.38872 1.16285 1.23143 0.98065 0.98757 0.89269 1.22429 0.93073 0.99335 0.99901 1.22421 0.99278 0.98863 0.95469 1.22534 0.92184 0.94449 0.98344 1.77292 0.96259 1.12810 1.28373 1.46308 1.04028 1.08242 1.61008 0.71194 0.88657 0.88922 0.89873 0.85928 0.92560 0.91670 0.96667 0.89379 0.90603 0.90891 0.89569 0.96521 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.83 10.43 71.23 0.74 -1.08 16 2 C 0.08 2.90 7.21 41.40 0.30 3.20 16 3 C -0.29 -13.70 10.65 21.99 0.23 -13.47 16 4 C 0.11 5.66 5.38 43.10 0.23 5.89 16 5 C 0.28 15.06 1.71 43.43 0.07 15.14 16 6 H 0.01 0.66 7.22 -2.39 -0.02 0.64 16 7 C -0.51 -29.62 7.75 25.60 0.20 -29.42 16 8 H 0.04 2.71 7.82 -2.91 -0.02 2.69 16 9 C 0.03 1.53 5.45 84.65 0.46 1.99 16 10 N -0.91 -52.22 12.84 21.45 0.28 -51.94 16 11 Si 0.96 44.62 29.54 68.60 2.03 46.64 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 13 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 14 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 15 N -0.52 -24.91 4.95 -866.65 -4.29 -29.20 16 16 C 0.04 1.47 5.72 86.65 0.50 1.97 16 17 C -0.11 -3.41 7.06 31.80 0.22 -3.18 16 18 C -0.12 -3.88 6.93 31.47 0.22 -3.66 16 19 C 0.05 2.29 5.91 86.44 0.51 2.80 16 20 N -0.32 -15.28 11.50 -47.38 -0.54 -15.83 16 21 N -0.49 -17.73 7.36 -48.01 -0.35 -18.08 16 22 H 0.44 11.96 8.96 -213.33 -1.91 10.05 16 23 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.12 6.19 8.06 -2.91 -0.02 6.17 16 27 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 28 H 0.06 2.76 7.25 -2.38 -0.02 2.74 16 29 H 0.02 0.65 7.99 -2.39 -0.02 0.63 16 30 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.02 0.78 7.70 -2.39 -0.02 0.76 16 35 H 0.06 2.63 8.14 -2.38 -0.02 2.61 16 Total: -1.00 -69.52 290.15 -0.03 -69.55 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -0.84 Total: 18.69 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: 3.69 Total: -19.85 kcal Atomic # 7 Polarization: -110.13 SS G_CDS: -4.91 Total: -115.04 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -69.52 -0.03 -69.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137951.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.255 kcal (2) G-P(sol) polarization free energy of solvation -69.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds