Wall clock time and date at job start Mon Mar 30 2020 03:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31030 * 1 3 3 Si 1.86792 * 120.00377 * 2 1 4 4 H 1.48502 * 109.47243 * 239.99944 * 3 2 1 5 5 H 1.48501 * 109.47246 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47111 * 120.00079 * 3 2 1 7 7 C 1.39705 * 119.99567 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99888 * 179.97438 * 7 2 1 9 9 C 1.41592 * 120.00218 * 0.02562 * 7 2 1 10 10 C 1.41886 * 126.55697 * 0.02918 * 9 7 2 11 11 N 1.30314 * 108.04706 * 179.72106 * 10 9 7 12 12 N 1.39878 * 109.23096 * 0.40492 * 11 10 9 13 13 C 1.46500 * 125.67564 * 179.85246 * 12 11 10 14 14 H 1.09003 * 109.47052 * 180.46196 * 13 12 11 15 15 C 1.53002 * 109.47084 * 300.46000 * 13 12 11 16 16 C 1.52996 * 109.47067 * 59.99755 * 15 13 12 17 17 C 1.53001 * 109.47202 * 60.00744 * 16 15 13 18 18 C 1.53002 * 109.46502 * 299.99602 * 17 16 15 19 19 C 1.53004 * 109.47411 * 60.45995 * 13 12 11 20 20 H 1.08993 * 109.47083 * 180.02562 * 19 13 12 21 21 N 1.46898 * 109.47090 * 59.99850 * 19 13 12 22 22 C 1.34502 * 108.64540 * 359.58252 * 12 11 10 23 23 H 0.97004 * 119.99501 * 0.02562 * 1 2 3 24 24 H 1.08006 * 125.97832 * 0.02562 * 10 9 7 25 25 H 1.08996 * 109.47359 * 180.02562 * 15 13 12 26 26 H 1.09005 * 109.46671 * 300.00169 * 15 13 12 27 27 H 1.09009 * 109.47205 * 180.02562 * 16 15 13 28 28 H 1.08992 * 109.47655 * 300.00074 * 16 15 13 29 29 H 1.08993 * 109.47619 * 179.97438 * 17 16 15 30 30 H 1.08996 * 109.46984 * 59.99428 * 17 16 15 31 31 H 1.08996 * 109.47359 * 299.99596 * 18 17 16 32 32 H 1.09005 * 109.46671 * 179.97438 * 18 17 16 33 33 H 1.00897 * 110.99480 * 180.02562 * 21 19 13 34 34 H 1.00895 * 111.00039 * 303.95368 * 21 19 13 35 35 H 1.08000 * 126.40170 * 180.22083 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2444 1.6176 0.0000 4 1 3.0982 1.6962 -1.2125 5 1 1.2795 2.7464 0.0006 6 1 3.0982 1.6962 1.2125 7 6 2.0087 -1.2099 0.0005 8 1 3.0887 -1.2100 0.0001 9 6 1.3007 -2.4361 0.0005 10 6 -0.1089 -2.5981 -0.0005 11 7 -0.3685 -3.8751 -0.0062 12 7 0.8339 -4.5898 0.0004 13 6 0.9604 -6.0493 0.0000 14 1 2.0155 -6.3226 0.0143 15 6 0.2686 -6.6214 1.2390 16 6 -1.2124 -6.2377 1.2190 17 6 -1.8696 -6.8064 -0.0402 18 6 -1.1778 -6.2343 -1.2792 19 6 0.3032 -6.6179 -1.2593 20 1 0.3969 -7.7038 -1.2592 21 7 0.9674 -6.0686 -2.4488 22 6 1.8547 -3.7139 0.0010 23 1 -0.4849 0.8401 -0.0004 24 1 -0.8390 -1.8022 -0.0019 25 1 0.3630 -7.7073 1.2390 26 1 0.7368 -6.2163 2.1361 27 1 -1.7052 -6.6450 2.1019 28 1 -1.3065 -5.1519 1.2192 29 1 -2.9247 -6.5335 -0.0543 30 1 -1.7755 -7.8923 -0.0404 31 1 -1.2719 -5.1484 -1.2790 32 1 -1.6457 -6.6398 -2.1763 33 1 0.5509 -6.4290 -3.2942 34 1 0.9502 -5.0599 -2.4391 35 1 2.9072 -3.9563 0.0021 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261145112.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:16 Heat of formation + Delta-G solvation = 65.934468 kcal Electronic energy + Delta-G solvation = -17244.233357 eV Core-core repulsion = 14664.212851 eV Total energy + Delta-G solvation = -2580.020506 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.89886 -37.55632 -33.36744 -33.19940 -31.51020 -28.93236 -28.67864 -27.08449 -24.58086 -22.38553 -21.51698 -20.04149 -19.34756 -18.56773 -16.76096 -15.75720 -15.28290 -14.89108 -14.66788 -14.03242 -13.58525 -13.09329 -12.75292 -12.67203 -12.47553 -11.90634 -11.80792 -11.51810 -11.19214 -11.08100 -10.93190 -10.80976 -10.68523 -10.27166 -10.02133 -9.95819 -9.81505 -9.17338 -8.53483 -8.33052 -7.68211 -7.09181 -6.38086 -3.94018 3.10041 3.21910 3.25303 3.46843 3.89515 4.17700 4.43780 4.75026 5.07018 5.18485 5.39798 5.50817 5.59031 5.65888 5.73338 5.77867 5.86412 5.89985 6.13196 6.18287 6.40221 6.48653 6.52309 6.63331 6.82469 6.90580 7.13633 7.38567 7.44908 7.60283 7.75415 7.77035 8.21011 8.61247 8.72866 9.11787 9.22709 9.56744 10.61178 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.041934 B = 0.006923 C = 0.006690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.552013 B = 4043.475808 C = 4184.326392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.066 3.934 3 Si 0.913 3.087 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.438 4.438 8 H 0.066 0.934 9 C -0.021 4.021 10 C 0.023 3.977 11 N -0.333 5.333 12 N -0.380 5.380 13 C 0.184 3.816 14 H 0.087 0.913 15 C -0.123 4.123 16 C -0.131 4.131 17 C -0.100 4.100 18 C -0.163 4.163 19 C 0.086 3.914 20 H 0.077 0.923 21 N -0.845 5.845 22 C -0.113 4.113 23 H 0.272 0.728 24 H 0.199 0.801 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.046 0.954 28 H 0.105 0.895 29 H 0.054 0.946 30 H 0.044 0.956 31 H 0.105 0.895 32 H 0.043 0.957 33 H 0.333 0.667 34 H 0.351 0.649 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.563 -9.690 -0.713 9.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.144 4.144 3 Si 0.739 3.261 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.473 4.473 8 H 0.084 0.916 9 C -0.031 4.031 10 C -0.162 4.162 11 N -0.156 5.156 12 N -0.168 5.168 13 C 0.079 3.921 14 H 0.105 0.895 15 C -0.162 4.162 16 C -0.169 4.169 17 C -0.138 4.138 18 C -0.203 4.203 19 C -0.026 4.026 20 H 0.095 0.905 21 N -0.373 5.373 22 C -0.254 4.254 23 H 0.083 0.917 24 H 0.215 0.785 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.123 0.877 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.123 0.877 32 H 0.061 0.939 33 H 0.144 0.856 34 H 0.165 0.835 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.903 -10.843 -0.448 11.018 hybrid contribution 0.271 1.717 -0.210 1.751 sum -1.632 -9.125 -0.658 9.294 Atomic orbital electron populations 1.69450 1.07016 1.27789 1.43436 1.25600 0.94760 1.00425 0.93569 0.86308 0.79595 0.80954 0.79232 1.19632 1.20818 1.19657 1.18693 0.93511 0.89212 1.45844 0.91616 1.18151 0.91818 0.91477 1.01629 1.25115 0.97981 0.92097 1.01046 1.76217 1.05845 1.06338 1.27207 1.47400 1.03873 1.03197 1.62318 1.20866 0.99387 0.77901 0.93939 0.89489 1.21806 0.97274 0.99530 0.97543 1.21769 0.93821 1.05136 0.96156 1.21276 0.98942 0.98347 0.95267 1.22595 0.95589 1.05322 0.96753 1.21680 0.92120 0.98151 0.90690 0.90468 1.58959 1.60205 1.14485 1.03694 1.22198 0.92211 0.89856 1.21127 0.91715 0.78451 0.91788 0.91803 0.93565 0.87669 0.92761 0.93677 0.87682 0.93870 0.85598 0.83474 0.84571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.28 10.33 55.54 0.57 -21.71 16 2 C 0.07 1.72 5.49 -17.35 -0.10 1.63 16 3 Si 0.91 19.80 29.56 -169.99 -5.02 14.78 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.44 -11.92 9.40 -37.76 -0.35 -12.27 16 8 H 0.07 1.73 7.84 -52.49 -0.41 1.32 16 9 C -0.02 -0.56 5.93 -106.84 -0.63 -1.19 16 10 C 0.02 0.60 10.91 -16.80 -0.18 0.42 16 11 N -0.33 -7.64 6.55 30.97 0.20 -7.44 16 12 N -0.38 -8.01 2.49 -53.91 -0.13 -8.14 16 13 C 0.18 3.15 3.05 -67.93 -0.21 2.94 16 14 H 0.09 1.45 8.06 -51.93 -0.42 1.03 16 15 C -0.12 -1.89 5.64 -26.73 -0.15 -2.04 16 16 C -0.13 -2.11 5.64 -26.73 -0.15 -2.26 16 17 C -0.10 -1.47 5.92 -26.73 -0.16 -1.62 16 18 C -0.16 -2.59 5.20 -26.73 -0.14 -2.73 16 19 C 0.09 1.34 3.06 -67.71 -0.21 1.13 16 20 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 21 N -0.84 -13.41 9.25 -4.67 -0.04 -13.45 16 22 C -0.11 -2.68 11.50 -16.00 -0.18 -2.87 16 23 H 0.27 6.68 8.30 -40.82 -0.34 6.34 16 24 H 0.20 5.32 5.77 -52.48 -0.30 5.02 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 28 H 0.11 2.06 5.36 -51.93 -0.28 1.78 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.11 2.02 5.40 -51.93 -0.28 1.74 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.33 4.52 9.04 -39.29 -0.36 4.17 16 34 H 0.35 6.54 8.29 -39.29 -0.33 6.21 16 35 H 0.14 3.00 8.06 -52.49 -0.42 2.58 16 LS Contribution 274.34 15.07 4.13 4.13 Total: -1.00 -26.74 274.34 -7.64 -34.38 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -4.89 Total: 16.31 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -2.46 Total: -18.87 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.60 Total: -50.74 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -26.74 -7.64 -34.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261145112.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.314 kcal (2) G-P(sol) polarization free energy of solvation -26.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds