Wall clock time and date at job start Mon Mar 30 2020 03:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31030 * 1 3 3 Si 1.86792 * 120.00377 * 2 1 4 4 H 1.48502 * 109.47243 * 239.99944 * 3 2 1 5 5 H 1.48501 * 109.47246 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47111 * 120.00079 * 3 2 1 7 7 C 1.39705 * 119.99567 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99888 * 179.97438 * 7 2 1 9 9 C 1.41592 * 120.00218 * 0.02562 * 7 2 1 10 10 C 1.41886 * 126.55697 * 0.02918 * 9 7 2 11 11 N 1.30314 * 108.04706 * 179.72106 * 10 9 7 12 12 N 1.39878 * 109.23096 * 0.40492 * 11 10 9 13 13 C 1.46500 * 125.67564 * 179.85246 * 12 11 10 14 14 H 1.09003 * 109.47052 * 180.46196 * 13 12 11 15 15 C 1.53002 * 109.47084 * 300.46000 * 13 12 11 16 16 C 1.52996 * 109.47067 * 59.99755 * 15 13 12 17 17 C 1.53001 * 109.47202 * 60.00744 * 16 15 13 18 18 C 1.53002 * 109.46502 * 299.99602 * 17 16 15 19 19 C 1.53004 * 109.47411 * 60.45995 * 13 12 11 20 20 H 1.08993 * 109.47083 * 180.02562 * 19 13 12 21 21 N 1.46898 * 109.47090 * 59.99850 * 19 13 12 22 22 C 1.34502 * 108.64540 * 359.58252 * 12 11 10 23 23 H 0.97004 * 119.99501 * 0.02562 * 1 2 3 24 24 H 1.08006 * 125.97832 * 0.02562 * 10 9 7 25 25 H 1.08996 * 109.47359 * 180.02562 * 15 13 12 26 26 H 1.09005 * 109.46671 * 300.00169 * 15 13 12 27 27 H 1.09009 * 109.47205 * 180.02562 * 16 15 13 28 28 H 1.08992 * 109.47655 * 300.00074 * 16 15 13 29 29 H 1.08993 * 109.47619 * 179.97438 * 17 16 15 30 30 H 1.08996 * 109.46984 * 59.99428 * 17 16 15 31 31 H 1.08996 * 109.47359 * 299.99596 * 18 17 16 32 32 H 1.09005 * 109.46671 * 179.97438 * 18 17 16 33 33 H 1.00897 * 110.99480 * 180.02562 * 21 19 13 34 34 H 1.00895 * 111.00039 * 303.95368 * 21 19 13 35 35 H 1.08000 * 126.40170 * 180.22083 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2444 1.6176 0.0000 4 1 3.0982 1.6962 -1.2125 5 1 1.2795 2.7464 0.0006 6 1 3.0982 1.6962 1.2125 7 6 2.0087 -1.2099 0.0005 8 1 3.0887 -1.2100 0.0001 9 6 1.3007 -2.4361 0.0005 10 6 -0.1089 -2.5981 -0.0005 11 7 -0.3685 -3.8751 -0.0062 12 7 0.8339 -4.5898 0.0004 13 6 0.9604 -6.0493 0.0000 14 1 2.0155 -6.3226 0.0143 15 6 0.2686 -6.6214 1.2390 16 6 -1.2124 -6.2377 1.2190 17 6 -1.8696 -6.8064 -0.0402 18 6 -1.1778 -6.2343 -1.2792 19 6 0.3032 -6.6179 -1.2593 20 1 0.3969 -7.7038 -1.2592 21 7 0.9674 -6.0686 -2.4488 22 6 1.8547 -3.7139 0.0010 23 1 -0.4849 0.8401 -0.0004 24 1 -0.8390 -1.8022 -0.0019 25 1 0.3630 -7.7073 1.2390 26 1 0.7368 -6.2163 2.1361 27 1 -1.7052 -6.6450 2.1019 28 1 -1.3065 -5.1519 1.2192 29 1 -2.9247 -6.5335 -0.0543 30 1 -1.7755 -7.8923 -0.0404 31 1 -1.2719 -5.1484 -1.2790 32 1 -1.6457 -6.6398 -2.1763 33 1 0.5509 -6.4290 -3.2942 34 1 0.9502 -5.0599 -2.4391 35 1 2.9072 -3.9563 0.0021 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261145112.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:16 Heat of formation + Delta-G solvation = 49.749696 kcal Electronic energy + Delta-G solvation = -17244.935181 eV Core-core repulsion = 14664.212851 eV Total energy + Delta-G solvation = -2580.722330 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.55716 -39.05640 -35.27458 -34.44666 -33.04327 -30.85010 -30.16738 -28.49678 -26.48293 -23.75819 -22.81115 -21.64154 -21.16429 -20.22564 -18.56763 -17.10925 -16.75288 -16.60015 -16.26454 -15.40580 -15.07755 -14.69218 -14.33281 -14.16817 -13.82947 -13.40675 -13.30663 -13.04091 -12.95965 -12.76634 -12.54245 -12.42519 -12.10435 -11.82627 -11.57662 -11.42545 -11.21299 -11.03644 -10.29671 -9.60457 -9.46167 -9.01145 -8.30365 -5.95006 1.34820 1.44963 1.55622 1.65169 2.25865 2.36428 2.47956 3.47815 3.62146 3.79195 3.91078 4.12660 4.25965 4.35218 4.42067 4.53550 4.56664 4.65459 4.78859 4.93067 4.97802 5.02309 5.25002 5.27872 5.38143 5.40844 5.53423 5.62639 5.73661 5.89536 6.13032 6.23326 6.50781 6.65644 6.89119 7.17990 7.23012 7.66327 8.69168 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.041934 B = 0.006923 C = 0.006690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.552013 B = 4043.475808 C = 4184.326392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.021 3.979 3 Si 0.983 3.017 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.474 4.474 8 H 0.063 0.937 9 C -0.060 4.060 10 C -0.013 4.013 11 N -0.314 5.314 12 N -0.359 5.359 13 C 0.168 3.832 14 H 0.098 0.902 15 C -0.118 4.118 16 C -0.133 4.133 17 C -0.095 4.095 18 C -0.162 4.162 19 C 0.091 3.909 20 H 0.110 0.890 21 N -0.846 5.846 22 C -0.106 4.106 23 H 0.276 0.724 24 H 0.181 0.819 25 H 0.104 0.896 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.346 0.654 34 H 0.333 0.667 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.101 -11.815 -0.806 11.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.186 4.186 3 Si 0.806 3.194 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.509 4.509 8 H 0.081 0.919 9 C -0.070 4.070 10 C -0.197 4.197 11 N -0.138 5.138 12 N -0.147 5.147 13 C 0.065 3.935 14 H 0.116 0.884 15 C -0.156 4.156 16 C -0.171 4.171 17 C -0.133 4.133 18 C -0.201 4.201 19 C -0.021 4.021 20 H 0.128 0.872 21 N -0.374 5.374 22 C -0.249 4.249 23 H 0.086 0.914 24 H 0.197 0.803 25 H 0.123 0.877 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.159 0.841 34 H 0.145 0.855 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.463 -13.013 -0.548 13.106 hybrid contribution 0.108 2.161 -0.187 2.172 sum -1.355 -10.852 -0.735 10.961 Atomic orbital electron populations 1.69579 1.08220 1.28673 1.43757 1.26430 0.95643 1.03591 0.92948 0.85236 0.78287 0.76627 0.79258 1.19150 1.19960 1.19228 1.18970 0.93605 0.90522 1.47803 0.91868 1.18479 0.92412 0.92656 1.03498 1.24845 0.97684 0.92927 1.04231 1.76310 1.06284 1.05231 1.26011 1.47779 1.02672 1.04825 1.59432 1.21411 1.00798 0.75198 0.96105 0.88397 1.21806 0.96212 1.01772 0.95830 1.21723 0.94851 1.02646 0.97889 1.21257 0.98532 0.99954 0.93602 1.22525 0.96370 1.02929 0.98315 1.21736 0.91360 0.99608 0.89416 0.87192 1.58983 1.60591 1.13088 1.04744 1.22460 0.93366 0.89637 1.19396 0.91398 0.80308 0.87735 0.92933 0.91833 0.91781 0.92823 0.90580 0.91564 0.92209 0.84053 0.85529 0.82922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.70 10.33 21.79 0.23 -47.48 16 2 C 0.02 1.11 5.49 85.17 0.47 1.58 16 3 Si 0.98 41.34 29.56 68.60 2.03 43.37 16 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 6 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 7 C -0.47 -26.73 9.40 23.45 0.22 -26.51 16 8 H 0.06 3.43 7.84 -2.91 -0.02 3.41 16 9 C -0.06 -3.33 5.93 -21.30 -0.13 -3.46 16 10 C -0.01 -0.69 10.91 85.82 0.94 0.25 16 11 N -0.31 -14.76 6.55 -55.93 -0.37 -15.13 16 12 N -0.36 -15.04 2.49 -324.48 -0.81 -15.85 16 13 C 0.17 5.32 3.05 44.99 0.14 5.46 16 14 H 0.10 2.95 8.06 -2.39 -0.02 2.93 16 15 C -0.12 -3.25 5.64 30.59 0.17 -3.08 16 16 C -0.13 -3.99 5.64 30.59 0.17 -3.82 16 17 C -0.10 -2.49 5.92 30.60 0.18 -2.31 16 18 C -0.16 -4.75 5.20 30.60 0.16 -4.60 16 19 C 0.09 2.52 3.06 44.92 0.14 2.66 16 20 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 21 N -0.85 -25.03 9.25 -168.68 -1.56 -26.59 16 22 C -0.11 -5.03 11.50 84.53 0.97 -4.06 16 23 H 0.28 13.98 8.30 -92.70 -0.77 13.22 16 24 H 0.18 10.31 5.77 -2.91 -0.02 10.29 16 25 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 28 H 0.06 2.49 5.36 -2.39 -0.01 2.48 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 2.52 5.40 -2.39 -0.01 2.51 16 32 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.35 8.57 9.04 -89.70 -0.81 7.76 16 34 H 0.33 12.16 8.29 -89.70 -0.74 11.41 16 35 H 0.15 6.65 8.06 -2.91 -0.02 6.63 16 Total: -1.00 -60.07 274.34 2.50 -57.57 By element: Atomic # 1 Polarization: 42.43 SS G_CDS: -0.45 Total: 41.99 kcal Atomic # 6 Polarization: -41.31 SS G_CDS: 3.43 Total: -37.88 kcal Atomic # 7 Polarization: -102.53 SS G_CDS: -2.51 Total: -105.04 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -60.07 2.50 -57.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261145112.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.321 kcal (2) G-P(sol) polarization free energy of solvation -60.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds