Wall clock time and date at job start Mon Mar 30 2020 03:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31037 * 1 3 3 Si 1.86798 * 120.00073 * 2 1 4 4 H 1.48499 * 109.47123 * 269.99930 * 3 2 1 5 5 H 1.48503 * 109.46970 * 29.99727 * 3 2 1 6 6 H 1.48492 * 109.47023 * 149.99601 * 3 2 1 7 7 C 1.39703 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99662 * 179.72484 * 7 2 1 9 9 C 1.41599 * 120.00009 * 0.02562 * 7 2 1 10 10 C 1.41873 * 126.55845 * 359.68466 * 9 7 2 11 11 N 1.30320 * 108.04885 * 179.85483 * 10 9 7 12 12 N 1.39877 * 109.22693 * 0.41253 * 11 10 9 13 13 C 1.46504 * 125.67724 * 179.75625 * 12 11 10 14 14 H 1.09000 * 109.46977 * 264.49001 * 13 12 11 15 15 C 1.53000 * 109.47013 * 144.48741 * 13 12 11 16 16 C 1.52994 * 109.47476 * 299.99840 * 15 13 12 17 17 C 1.52998 * 109.47228 * 300.00314 * 16 15 13 18 18 C 1.53001 * 109.46971 * 60.00014 * 17 16 15 19 19 C 1.52998 * 109.46997 * 24.48852 * 13 12 11 20 20 H 1.08998 * 109.47488 * 179.97438 * 19 13 12 21 21 N 1.46901 * 109.47324 * 300.00410 * 19 13 12 22 22 C 1.34504 * 108.64904 * 359.73043 * 12 11 10 23 23 H 0.96994 * 119.99873 * 0.02562 * 1 2 3 24 24 H 1.08008 * 125.97868 * 359.97438 * 10 9 7 25 25 H 1.08996 * 109.46995 * 60.00689 * 15 13 12 26 26 H 1.09002 * 109.46903 * 179.97438 * 15 13 12 27 27 H 1.08999 * 109.47186 * 180.02562 * 16 15 13 28 28 H 1.09002 * 109.47019 * 60.00115 * 16 15 13 29 29 H 1.08998 * 109.47488 * 299.99336 * 17 16 15 30 30 H 1.09000 * 109.46969 * 179.97438 * 17 16 15 31 31 H 1.09010 * 109.46809 * 180.02562 * 18 17 16 32 32 H 1.09002 * 109.47423 * 60.00109 * 18 17 16 33 33 H 1.00902 * 111.00117 * 179.97438 * 21 19 13 34 34 H 1.00905 * 110.99522 * 303.95102 * 21 19 13 35 35 H 1.08000 * 126.40536 * 180.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3104 0.0000 0.0000 3 14 2.2444 1.6177 0.0000 4 1 2.4919 2.0464 -1.4001 5 1 1.4418 2.6527 0.7000 6 1 3.5418 1.4401 0.7001 7 6 2.0088 -1.2099 0.0005 8 1 3.0888 -1.2099 -0.0040 9 6 1.3008 -2.4361 0.0005 10 6 -0.1087 -2.5981 0.0063 11 7 -0.3684 -3.8752 0.0011 12 7 0.8341 -4.5898 0.0014 13 6 0.9606 -6.0493 0.0015 14 1 1.0901 -6.4027 1.0244 15 6 2.1747 -6.4560 -0.8362 16 6 1.9929 -5.9600 -2.2721 17 6 0.7293 -6.5815 -2.8702 18 6 -0.4847 -6.1747 -2.0326 19 6 -0.3030 -6.6708 -0.5967 20 1 -0.2087 -7.7567 -0.5971 21 7 -1.4687 -6.2803 0.2074 22 6 1.8549 -3.7139 0.0010 23 1 -0.4850 0.8400 -0.0004 24 1 -0.8388 -1.8022 0.0119 25 1 3.0749 -6.0133 -0.4100 26 1 2.2691 -7.5419 -0.8357 27 1 2.8576 -6.2502 -2.8689 28 1 1.8988 -4.8741 -2.2722 29 1 0.8234 -7.6674 -2.8702 30 1 0.5996 -6.2278 -3.8930 31 1 -1.3850 -6.6179 -2.4586 32 1 -0.5789 -5.0888 -2.0327 33 1 -2.3166 -6.6782 -0.1678 34 1 -1.3441 -6.5399 1.1745 35 1 2.9073 -3.9562 0.0007 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261145117.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:19 Heat of formation + Delta-G solvation = 49.486881 kcal Electronic energy + Delta-G solvation = -17228.914585 eV Core-core repulsion = 14648.180858 eV Total energy + Delta-G solvation = -2580.733727 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.42677 -39.03176 -35.23881 -34.48959 -33.02158 -30.78106 -30.00066 -28.63415 -26.43163 -23.75854 -22.84202 -21.59162 -21.06779 -19.88669 -18.55806 -16.90620 -16.81201 -16.43056 -16.25002 -15.62153 -15.23824 -14.74191 -14.37964 -14.34087 -13.62978 -13.30439 -13.18658 -13.06639 -12.86715 -12.78335 -12.61173 -12.24605 -12.22001 -11.77372 -11.48131 -11.37128 -11.11289 -10.97185 -10.43099 -9.38826 -9.18006 -8.91327 -8.25924 -5.90012 1.36657 1.44171 1.57276 1.77892 2.36014 2.40649 2.57774 3.52294 3.63997 3.69249 3.86393 4.09681 4.17634 4.32453 4.41329 4.47130 4.55696 4.63020 4.75282 4.92073 4.98411 5.06833 5.20198 5.24405 5.33326 5.35377 5.43479 5.60784 5.77152 5.87894 6.28743 6.47452 6.71309 6.79090 6.99152 7.25262 7.29050 7.83409 8.73809 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.038246 B = 0.007235 C = 0.006738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.935971 B = 3869.230323 C = 4154.451343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.017 3.983 3 Si 0.984 3.016 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.473 4.473 8 H 0.062 0.938 9 C -0.066 4.066 10 C -0.031 4.031 11 N -0.274 5.274 12 N -0.357 5.357 13 C 0.163 3.837 14 H 0.069 0.931 15 C -0.119 4.119 16 C -0.121 4.121 17 C -0.109 4.109 18 C -0.112 4.112 19 C 0.107 3.893 20 H 0.069 0.931 21 N -0.837 5.837 22 C -0.113 4.113 23 H 0.274 0.726 24 H 0.176 0.824 25 H 0.066 0.934 26 H 0.112 0.888 27 H 0.080 0.920 28 H 0.030 0.970 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.343 0.657 34 H 0.338 0.662 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.869 -14.118 -2.807 14.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.189 4.189 3 Si 0.807 3.193 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.508 4.508 8 H 0.080 0.920 9 C -0.077 4.077 10 C -0.216 4.216 11 N -0.097 5.097 12 N -0.146 5.146 13 C 0.061 3.939 14 H 0.087 0.913 15 C -0.158 4.158 16 C -0.158 4.158 17 C -0.147 4.147 18 C -0.150 4.150 19 C -0.005 4.005 20 H 0.087 0.913 21 N -0.368 5.368 22 C -0.256 4.256 23 H 0.084 0.916 24 H 0.192 0.808 25 H 0.085 0.915 26 H 0.130 0.870 27 H 0.098 0.902 28 H 0.049 0.951 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.157 0.843 34 H 0.151 0.849 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.997 -14.220 -3.009 14.568 hybrid contribution 0.810 0.872 0.330 1.235 sum 1.807 -13.348 -2.678 13.733 Atomic orbital electron populations 1.69639 1.08299 1.28426 1.44058 1.26478 0.95654 1.03679 0.93131 0.85173 0.78574 0.76867 0.78707 1.19523 1.19935 1.18793 1.18983 0.93433 0.90597 1.47822 0.92002 1.18539 0.92543 0.92814 1.03759 1.24877 0.97576 0.93466 1.05718 1.76934 1.05450 1.04348 1.22957 1.47719 1.02764 1.04636 1.59432 1.21377 0.97095 0.76160 0.99304 0.91268 1.21864 0.96008 1.02932 0.94967 1.21503 0.98703 0.99635 0.95986 1.21487 0.93511 1.01385 0.98327 1.21521 0.98358 1.00864 0.94275 1.21348 0.89442 0.96350 0.93333 0.91330 1.58357 1.03931 1.69121 1.05430 1.22259 0.93340 0.89539 1.20422 0.91562 0.80794 0.91516 0.86971 0.90155 0.95082 0.89349 0.92245 0.91591 0.94351 0.84313 0.84886 0.83145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.98 10.33 21.79 0.23 -49.76 16 2 C 0.02 0.94 5.49 85.17 0.47 1.41 16 3 Si 0.98 42.69 29.56 68.60 2.03 44.72 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.47 -27.71 9.40 23.45 0.22 -27.49 16 8 H 0.06 3.48 7.84 -2.91 -0.02 3.45 16 9 C -0.07 -3.84 5.93 -21.30 -0.13 -3.97 16 10 C -0.03 -1.78 10.91 85.82 0.94 -0.84 16 11 N -0.27 -13.99 9.15 -55.94 -0.51 -14.50 16 12 N -0.36 -15.72 2.87 -324.48 -0.93 -16.65 16 13 C 0.16 5.19 3.24 44.99 0.15 5.34 16 14 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 15 C -0.12 -3.03 5.06 30.59 0.15 -2.87 16 16 C -0.12 -3.38 5.72 30.59 0.17 -3.20 16 17 C -0.11 -2.72 5.92 30.59 0.18 -2.53 16 18 C -0.11 -3.38 5.30 30.60 0.16 -3.22 16 19 C 0.11 2.94 2.85 44.92 0.13 3.07 16 20 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 21 N -0.84 -24.72 7.61 -168.68 -1.28 -26.01 16 22 C -0.11 -5.58 9.48 84.53 0.80 -4.78 16 23 H 0.27 14.48 8.30 -92.71 -0.77 13.71 16 24 H 0.18 10.73 5.77 -2.91 -0.02 10.71 16 25 H 0.07 1.77 7.13 -2.39 -0.02 1.75 16 26 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.03 1.17 6.64 -2.39 -0.02 1.16 16 29 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.04 1.58 6.53 -2.39 -0.02 1.56 16 33 H 0.34 8.50 9.04 -89.69 -0.81 7.69 16 34 H 0.34 9.18 8.99 -89.69 -0.81 8.38 16 35 H 0.15 6.68 7.25 -2.91 -0.02 6.66 16 Total: -1.00 -68.16 274.63 2.26 -65.89 By element: Atomic # 1 Polarization: 35.90 SS G_CDS: -0.51 Total: 35.39 kcal Atomic # 6 Polarization: -42.34 SS G_CDS: 3.25 Total: -39.09 kcal Atomic # 7 Polarization: -104.41 SS G_CDS: -2.50 Total: -106.91 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -68.16 2.26 -65.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261145117.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.381 kcal (2) G-P(sol) polarization free energy of solvation -68.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds