Wall clock time and date at job start Mon Mar 30 2020 03:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86803 * 120.00185 * 2 1 4 4 H 1.48497 * 109.47295 * 240.00369 * 3 2 1 5 5 H 1.48508 * 109.47020 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47266 * 119.99939 * 3 2 1 7 7 C 1.40239 * 120.00409 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00224 * 180.02562 * 7 2 1 9 9 C 1.39998 * 119.99522 * 359.97438 * 7 2 1 10 10 N 1.32987 * 125.96519 * 359.97438 * 9 7 2 11 11 C 1.32754 * 109.22635 * 180.02562 * 10 9 7 12 12 C 1.36219 * 108.62008 * 0.02562 * 11 10 9 13 13 N 1.36425 * 107.19323 * 359.97438 * 12 11 10 14 14 C 1.46494 * 126.55355 * 179.73672 * 13 12 11 15 15 H 1.09001 * 109.57102 * 180.02562 * 14 13 12 16 16 C 1.54527 * 109.57430 * 59.77567 * 14 13 12 17 17 C 1.45874 * 111.67102 * 162.95434 * 16 14 13 18 18 C 1.53981 * 112.67256 * 61.49886 * 17 16 14 19 19 N 1.44302 * 108.31020 * 278.59442 * 18 17 16 20 20 C 1.47948 * 113.64389 * 95.39558 * 19 18 17 21 21 C 1.50541 * 109.57688 * 300.27408 * 14 13 12 22 22 H 0.96999 * 120.00466 * 0.02562 * 1 2 3 23 23 H 1.07994 * 125.69307 * 180.02562 * 11 10 9 24 24 H 1.08005 * 126.40605 * 180.02562 * 12 11 10 25 25 H 1.08994 * 109.04339 * 283.52290 * 16 14 13 26 26 H 1.09004 * 109.03870 * 42.46862 * 16 14 13 27 27 H 1.08999 * 108.84260 * 182.31947 * 17 16 14 28 28 H 1.09001 * 108.84639 * 300.78133 * 17 16 14 29 29 H 1.09006 * 109.69280 * 38.29856 * 18 17 16 30 30 H 1.08993 * 109.70138 * 158.88454 * 18 17 16 31 31 H 1.00894 * 111.00177 * 329.44149 * 19 18 17 32 32 H 1.08997 * 108.71171 * 79.12592 * 20 19 18 33 33 H 1.08995 * 108.71175 * 197.14390 * 20 19 18 34 34 H 1.08997 * 108.78396 * 332.45537 * 21 14 13 35 35 H 1.08997 * 108.78889 * 90.66738 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2758 2.7465 -0.0006 6 1 3.0946 1.6964 1.2124 7 6 2.0081 -1.2145 -0.0005 8 1 3.0880 -1.2144 -0.0001 9 6 1.3080 -2.4269 -0.0005 10 7 -0.0146 -2.5651 0.0004 11 6 -0.3192 -3.8572 0.0006 12 6 0.8375 -4.5767 0.0004 13 7 1.8683 -3.6830 -0.0006 14 6 3.2984 -4.0006 0.0042 15 1 3.8775 -3.0771 0.0024 16 6 3.6480 -4.8333 -1.2497 17 6 5.0834 -4.8390 -1.5095 18 6 5.8922 -5.4680 -0.3600 19 7 6.0680 -4.4715 0.6688 20 6 5.0591 -4.5486 1.7482 21 6 3.6328 -4.8032 1.2332 22 1 -0.4851 0.8400 -0.0004 23 1 -1.3174 -4.2693 0.0010 24 1 0.9227 -5.6533 0.0001 25 1 3.3093 -5.8586 -1.1015 26 1 3.1333 -4.4102 -2.1124 27 1 5.2736 -5.4024 -2.4230 28 1 5.4193 -3.8121 -1.6534 29 1 5.3507 -6.3229 0.0453 30 1 6.8656 -5.7906 -0.7292 31 1 6.1030 -3.5445 0.2721 32 1 5.3353 -5.3545 2.4281 33 1 5.0667 -3.6096 2.3016 34 1 2.9237 -4.5499 2.0213 35 1 3.5303 -5.8627 0.9991 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261167100.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:00 Heat of formation + Delta-G solvation = 53.990724 kcal Electronic energy + Delta-G solvation = -17163.399166 eV Core-core repulsion = 14582.860741 eV Total energy + Delta-G solvation = -2580.538426 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.22773 -38.47568 -33.69406 -33.22261 -32.51001 -29.49816 -28.58373 -25.28197 -24.99446 -24.38204 -21.04905 -20.52012 -19.78039 -18.41886 -16.99625 -15.86217 -15.61176 -15.39367 -14.75527 -14.29032 -13.84220 -13.35468 -13.00246 -12.74747 -12.53918 -12.39094 -12.11254 -11.99767 -11.24006 -11.16915 -11.14597 -10.89049 -10.71744 -10.46586 -10.39647 -10.33182 -10.01193 -9.17986 -8.31700 -7.90318 -7.72270 -7.01816 -6.36467 -4.24444 3.07141 3.16107 3.17062 3.68557 4.00923 4.22625 4.44822 4.73210 4.75876 4.87553 5.17484 5.26908 5.40354 5.46670 5.57982 5.69454 5.75085 5.81793 5.93055 6.07319 6.12701 6.20387 6.29944 6.39314 6.44527 6.52979 6.62752 7.16084 7.19659 7.32777 7.44956 7.66010 8.14178 8.26004 8.61915 9.00247 9.37075 10.29584 10.56968 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023606 B = 0.009042 C = 0.007348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.833949 B = 3095.821104 C = 3809.851287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.083 3.917 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.465 4.465 8 H 0.074 0.926 9 C 0.376 3.624 10 N -0.518 5.518 11 C -0.019 4.019 12 C -0.173 4.173 13 N -0.500 5.500 14 C 0.160 3.840 15 H 0.089 0.911 16 C -0.125 4.125 17 C -0.150 4.150 18 C 0.066 3.934 19 N -0.697 5.697 20 C 0.065 3.935 21 C -0.159 4.159 22 H 0.272 0.728 23 H 0.131 0.869 24 H 0.130 0.870 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.344 0.656 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.920 -6.806 -0.193 12.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.504 4.504 8 H 0.092 0.908 9 C 0.133 3.867 10 N -0.239 5.239 11 C -0.171 4.171 12 C -0.303 4.303 13 N -0.190 5.190 14 C 0.055 3.945 15 H 0.107 0.893 16 C -0.163 4.163 17 C -0.189 4.189 18 C -0.064 4.064 19 N -0.327 5.327 20 C -0.064 4.064 21 C -0.199 4.199 22 H 0.083 0.917 23 H 0.149 0.851 24 H 0.147 0.853 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.163 0.837 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.659 -6.517 0.149 11.653 hybrid contribution 0.047 0.201 -0.526 0.565 sum 9.706 -6.316 -0.377 11.586 Atomic orbital electron populations 1.69998 1.06858 1.27595 1.32415 1.25665 0.94724 1.00059 0.93609 0.86417 0.79896 0.81016 0.79491 1.19278 1.20357 1.19223 1.17999 0.93088 0.87748 1.51569 0.90834 1.20287 0.87548 0.83494 0.95403 1.71289 1.10187 1.14482 1.27930 1.22120 0.95894 0.92178 1.06933 1.21704 0.88700 0.93894 1.25974 1.45497 1.03528 1.07157 1.62827 1.20558 0.82194 0.98262 0.93530 0.89326 1.20913 0.96153 1.00349 0.98929 1.21179 0.96096 1.01746 0.99897 1.21758 0.98898 0.95171 0.90578 1.59628 1.49608 1.08485 1.14984 1.22270 0.88116 1.02405 0.93635 1.22312 0.98300 1.00297 0.98962 0.91738 0.85109 0.85258 0.92242 0.91375 0.91659 0.91688 0.91456 0.91101 0.83685 0.91258 0.91114 0.90607 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.11 11.90 55.56 0.66 -20.45 16 2 C 0.08 2.20 5.50 -17.29 -0.10 2.11 16 3 Si 0.91 19.30 29.56 -169.99 -5.03 14.27 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.46 -12.67 9.03 -38.17 -0.34 -13.01 16 8 H 0.07 1.84 6.71 -52.49 -0.35 1.49 16 9 C 0.38 10.51 7.43 -155.60 -1.16 9.35 16 10 N -0.52 -15.30 9.40 -12.73 -0.12 -15.42 16 11 C -0.02 -0.48 11.85 -17.88 -0.21 -0.69 16 12 C -0.17 -4.02 10.90 -16.24 -0.18 -4.20 16 13 N -0.50 -11.76 2.56 -109.33 -0.28 -12.04 16 14 C 0.16 2.94 2.51 -68.36 -0.17 2.77 16 15 H 0.09 1.70 6.01 -51.93 -0.31 1.39 16 16 C -0.13 -1.97 4.65 -29.30 -0.14 -2.11 16 17 C -0.15 -1.87 5.29 -29.59 -0.16 -2.02 16 18 C 0.07 0.76 6.27 -4.70 -0.03 0.73 16 19 N -0.70 -8.67 6.55 -113.87 -0.75 -9.42 16 20 C 0.07 0.87 6.43 -2.85 -0.02 0.85 16 21 C -0.16 -2.51 4.64 -27.56 -0.13 -2.63 16 22 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 23 H 0.13 2.99 8.06 -52.49 -0.42 2.57 16 24 H 0.13 2.61 8.06 -52.48 -0.42 2.19 16 25 H 0.06 0.91 7.60 -51.93 -0.39 0.51 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.82 7.50 -51.93 -0.39 0.44 16 29 H 0.07 0.79 6.80 -51.93 -0.35 0.44 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.34 4.26 7.57 -39.30 -0.30 3.96 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.37 7.96 -51.93 -0.41 0.96 16 35 H 0.06 0.88 6.67 -51.93 -0.35 0.53 16 LS Contribution 277.73 15.07 4.19 4.19 Total: -1.00 -31.04 277.73 -8.90 -39.94 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -4.95 Total: 7.79 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -2.63 Total: -8.85 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.48 Total: -57.34 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.04 -8.90 -39.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261167100.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.931 kcal (2) G-P(sol) polarization free energy of solvation -31.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds