Wall clock time and date at job start Mon Mar 30 2020 03:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86803 * 120.00185 * 2 1 4 4 H 1.48497 * 109.47295 * 240.00369 * 3 2 1 5 5 H 1.48508 * 109.47020 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47266 * 119.99939 * 3 2 1 7 7 C 1.40239 * 120.00409 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00224 * 180.02562 * 7 2 1 9 9 C 1.39998 * 119.99522 * 359.97438 * 7 2 1 10 10 N 1.32987 * 125.96519 * 359.97438 * 9 7 2 11 11 C 1.32754 * 109.22635 * 180.02562 * 10 9 7 12 12 C 1.36219 * 108.62008 * 0.02562 * 11 10 9 13 13 N 1.36425 * 107.19323 * 359.97438 * 12 11 10 14 14 C 1.46494 * 126.55355 * 179.73672 * 13 12 11 15 15 H 1.09001 * 109.57102 * 180.02562 * 14 13 12 16 16 C 1.54527 * 109.57430 * 59.77567 * 14 13 12 17 17 C 1.45874 * 111.67102 * 162.95434 * 16 14 13 18 18 C 1.53981 * 112.67256 * 61.49886 * 17 16 14 19 19 N 1.44302 * 108.31020 * 278.59442 * 18 17 16 20 20 C 1.47948 * 113.64389 * 95.39558 * 19 18 17 21 21 C 1.50541 * 109.57688 * 300.27408 * 14 13 12 22 22 H 0.96999 * 120.00466 * 0.02562 * 1 2 3 23 23 H 1.07994 * 125.69307 * 180.02562 * 11 10 9 24 24 H 1.08005 * 126.40605 * 180.02562 * 12 11 10 25 25 H 1.08994 * 109.04339 * 283.52290 * 16 14 13 26 26 H 1.09004 * 109.03870 * 42.46862 * 16 14 13 27 27 H 1.08999 * 108.84260 * 182.31947 * 17 16 14 28 28 H 1.09001 * 108.84639 * 300.78133 * 17 16 14 29 29 H 1.09006 * 109.69280 * 38.29856 * 18 17 16 30 30 H 1.08993 * 109.70138 * 158.88454 * 18 17 16 31 31 H 1.00894 * 111.00177 * 329.44149 * 19 18 17 32 32 H 1.08997 * 108.71171 * 79.12592 * 20 19 18 33 33 H 1.08995 * 108.71175 * 197.14390 * 20 19 18 34 34 H 1.08997 * 108.78396 * 332.45537 * 21 14 13 35 35 H 1.08997 * 108.78889 * 90.66738 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2758 2.7465 -0.0006 6 1 3.0946 1.6964 1.2124 7 6 2.0081 -1.2145 -0.0005 8 1 3.0880 -1.2144 -0.0001 9 6 1.3080 -2.4269 -0.0005 10 7 -0.0146 -2.5651 0.0004 11 6 -0.3192 -3.8572 0.0006 12 6 0.8375 -4.5767 0.0004 13 7 1.8683 -3.6830 -0.0006 14 6 3.2984 -4.0006 0.0042 15 1 3.8775 -3.0771 0.0024 16 6 3.6480 -4.8333 -1.2497 17 6 5.0834 -4.8390 -1.5095 18 6 5.8922 -5.4680 -0.3600 19 7 6.0680 -4.4715 0.6688 20 6 5.0591 -4.5486 1.7482 21 6 3.6328 -4.8032 1.2332 22 1 -0.4851 0.8400 -0.0004 23 1 -1.3174 -4.2693 0.0010 24 1 0.9227 -5.6533 0.0001 25 1 3.3093 -5.8586 -1.1015 26 1 3.1333 -4.4102 -2.1124 27 1 5.2736 -5.4024 -2.4230 28 1 5.4193 -3.8121 -1.6534 29 1 5.3507 -6.3229 0.0453 30 1 6.8656 -5.7906 -0.7292 31 1 6.1030 -3.5445 0.2721 32 1 5.3353 -5.3545 2.4281 33 1 5.0667 -3.6096 2.3016 34 1 2.9237 -4.5499 2.0213 35 1 3.5303 -5.8627 0.9991 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261167100.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:00 Heat of formation + Delta-G solvation = 33.677027 kcal Electronic energy + Delta-G solvation = -17164.280034 eV Core-core repulsion = 14582.860741 eV Total energy + Delta-G solvation = -2581.419294 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.02762 -39.79054 -35.35872 -34.96113 -33.67121 -31.12725 -30.58062 -26.95042 -26.36161 -25.78378 -22.48357 -21.78894 -21.69893 -20.08058 -18.78724 -17.61966 -16.89653 -16.50792 -16.41698 -15.73027 -15.12829 -14.89926 -14.60203 -14.42255 -13.93039 -13.86757 -13.64755 -13.38741 -12.97431 -12.83749 -12.56334 -12.30726 -12.00478 -11.97998 -11.90392 -11.64508 -11.48282 -11.09770 -9.86669 -9.77440 -9.28376 -9.03462 -8.33134 -6.29441 1.36766 1.41497 1.54746 1.81742 2.24356 2.56812 2.75987 3.37617 3.47655 3.58273 3.74708 4.07229 4.12002 4.15262 4.25480 4.36824 4.52898 4.60484 4.64593 4.71958 4.86628 4.99135 5.01509 5.07804 5.10693 5.17601 5.21579 5.31546 5.38572 5.70987 6.18207 6.21034 6.27877 6.46606 6.67790 7.00645 7.40328 8.29838 8.63244 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023606 B = 0.009042 C = 0.007348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.833949 B = 3095.821104 C = 3809.851287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.031 3.969 3 Si 0.990 3.010 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.492 4.492 8 H 0.085 0.915 9 C 0.339 3.661 10 N -0.565 5.565 11 C -0.063 4.063 12 C -0.143 4.143 13 N -0.497 5.497 14 C 0.151 3.849 15 H 0.077 0.923 16 C -0.112 4.112 17 C -0.146 4.146 18 C 0.070 3.930 19 N -0.695 5.695 20 C 0.073 3.927 21 C -0.148 4.148 22 H 0.275 0.725 23 H 0.148 0.852 24 H 0.168 0.832 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.344 0.656 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.477 -7.793 -0.285 14.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.187 4.187 3 Si 0.810 3.190 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.532 4.532 8 H 0.103 0.897 9 C 0.094 3.906 10 N -0.287 5.287 11 C -0.214 4.214 12 C -0.274 4.274 13 N -0.185 5.185 14 C 0.048 3.952 15 H 0.095 0.905 16 C -0.150 4.150 17 C -0.185 4.185 18 C -0.060 4.060 19 N -0.325 5.325 20 C -0.057 4.057 21 C -0.188 4.188 22 H 0.085 0.915 23 H 0.166 0.834 24 H 0.185 0.815 25 H 0.088 0.912 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.110 0.890 31 H 0.163 0.837 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.252 -7.545 0.055 14.389 hybrid contribution -0.758 0.340 -0.510 0.974 sum 11.494 -7.205 -0.455 13.573 Atomic orbital electron populations 1.70152 1.08974 1.28823 1.34156 1.26750 0.95562 1.04023 0.92414 0.85169 0.78371 0.75426 0.80064 1.18159 1.19827 1.18070 1.18426 0.93797 0.88413 1.52525 0.89696 1.20595 0.87794 0.85255 0.96962 1.71156 1.11819 1.16708 1.29042 1.22565 0.97799 0.91672 1.09321 1.22232 0.87898 0.95345 1.21970 1.45770 1.05714 1.06003 1.61043 1.20939 0.79126 0.98834 0.96350 0.90475 1.20830 0.98271 0.99806 0.96140 1.21143 0.93727 1.02205 1.01424 1.21815 0.99794 0.94694 0.89681 1.59701 1.48712 1.08860 1.15221 1.22224 0.86579 1.02849 0.94074 1.22219 0.99475 1.00436 0.96644 0.91493 0.83423 0.81515 0.91199 0.94094 0.89556 0.92015 0.91110 0.88991 0.83675 0.89464 0.91675 0.93279 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -46.82 11.90 21.88 0.26 -46.56 16 2 C 0.03 1.69 5.50 85.35 0.47 2.16 16 3 Si 0.99 40.01 29.56 68.60 2.03 42.04 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 5 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 6 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 7 C -0.49 -27.53 9.03 23.18 0.21 -27.32 16 8 H 0.08 4.33 6.71 -2.91 -0.02 4.31 16 9 C 0.34 19.54 7.43 133.59 0.99 20.54 16 10 N -0.57 -34.66 9.40 -194.17 -1.83 -36.49 16 11 C -0.06 -3.29 11.85 84.08 1.00 -2.29 16 12 C -0.14 -6.58 10.90 83.51 0.91 -5.67 16 13 N -0.50 -23.47 2.56 -499.83 -1.28 -24.75 16 14 C 0.15 5.41 2.51 44.72 0.11 5.53 16 15 H 0.08 2.93 6.01 -2.39 -0.01 2.92 16 16 C -0.11 -3.32 4.65 28.93 0.13 -3.18 16 17 C -0.15 -3.20 5.29 28.74 0.15 -3.05 16 18 C 0.07 1.34 6.27 87.12 0.55 1.89 16 19 N -0.70 -15.21 6.55 -514.18 -3.37 -18.58 16 20 C 0.07 1.75 6.43 86.36 0.56 2.31 16 21 C -0.15 -4.40 4.64 30.06 0.14 -4.26 16 22 H 0.27 14.79 8.29 -92.71 -0.77 14.02 16 23 H 0.15 6.90 8.06 -2.91 -0.02 6.87 16 24 H 0.17 6.28 8.06 -2.91 -0.02 6.25 16 25 H 0.07 1.92 7.60 -2.39 -0.02 1.90 16 26 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.06 1.42 7.50 -2.39 -0.02 1.41 16 29 H 0.07 1.36 6.80 -2.38 -0.02 1.34 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.34 7.69 7.57 -89.70 -0.68 7.01 16 32 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.05 1.74 7.96 -2.39 -0.02 1.72 16 35 H 0.07 1.97 6.67 -2.39 -0.02 1.95 16 Total: -1.00 -69.81 277.73 1.44 -68.36 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.41 Total: 29.32 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 5.22 Total: -13.36 kcal Atomic # 7 Polarization: -120.16 SS G_CDS: -6.21 Total: -126.37 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Total: -69.81 1.44 -68.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261167100.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.041 kcal (2) G-P(sol) polarization free energy of solvation -69.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds