Wall clock time and date at job start Mon Mar 30 2020 03:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46761 * 2 1 4 4 C 1.52991 * 109.47550 * 240.00243 * 2 1 3 5 5 O 1.42903 * 109.47131 * 304.99767 * 4 2 1 6 6 C 1.42899 * 114.00342 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47103 * 180.02562 * 6 5 4 8 8 C 1.38235 * 119.99808 * 89.99842 * 7 6 5 9 9 C 1.38243 * 119.99602 * 179.97438 * 8 7 6 10 10 C 1.38231 * 120.00070 * 0.07188 * 9 8 7 11 11 C 1.38234 * 119.99892 * 359.90902 * 10 9 8 12 12 C 1.38230 * 119.99865 * 269.97588 * 7 6 5 13 13 N 1.46499 * 109.47385 * 119.99601 * 2 1 3 14 14 C 1.36939 * 120.00246 * 275.00972 * 13 2 1 15 15 H 1.08000 * 119.99914 * 359.97438 * 14 13 2 16 16 C 1.38817 * 119.99674 * 180.02562 * 14 13 2 17 17 N 1.31620 * 119.99391 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00325 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46906 * 90.00623 * 18 16 14 20 20 H 1.48500 * 109.47118 * 210.00274 * 18 16 14 21 21 H 1.48503 * 109.46950 * 330.00460 * 18 16 14 22 22 H 1.09003 * 109.46761 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47241 * 299.99651 * 1 2 3 24 24 H 1.08994 * 109.47416 * 60.00224 * 1 2 3 25 25 H 1.08999 * 109.47303 * 184.99975 * 4 2 1 26 26 H 1.08994 * 109.47466 * 64.99431 * 4 2 1 27 27 H 1.08993 * 109.47528 * 59.99500 * 6 5 4 28 28 H 1.09001 * 109.46686 * 299.99411 * 6 5 4 29 29 H 1.08000 * 120.00616 * 359.70324 * 8 7 6 30 30 H 1.08001 * 119.99556 * 179.97438 * 9 8 7 31 31 H 1.07997 * 119.99633 * 179.97438 * 10 9 8 32 32 H 1.07999 * 119.99751 * 180.02562 * 11 10 9 33 33 H 1.08001 * 120.00371 * 0.02562 * 12 7 6 34 34 H 0.97005 * 119.99878 * 95.00000 * 13 2 1 35 35 H 0.97006 * 119.99877 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 8 1.4703 -2.0303 -1.3094 6 6 1.8847 -2.7929 -2.4447 7 6 1.2263 -4.1480 -2.4070 8 6 0.0004 -4.3379 -3.0168 9 6 -0.6033 -5.5811 -2.9827 10 6 0.0184 -6.6338 -2.3376 11 6 1.2445 -6.4439 -1.7282 12 6 1.8486 -5.2010 -1.7631 13 7 2.0184 -0.6905 1.1962 14 6 2.1490 -0.0074 2.3758 15 1 1.8924 1.0406 2.4242 16 6 2.6123 -0.6617 3.5091 17 7 2.7383 -0.0049 4.6427 18 14 3.0568 -2.4740 3.4251 19 1 4.4895 -2.6159 3.0609 20 1 2.8179 -3.1041 4.7484 21 1 2.2166 -3.1428 2.3994 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 3.1264 -0.7993 -1.2055 26 1 1.7517 -0.1583 -2.1369 27 1 2.9677 -2.9140 -2.4255 28 1 1.5933 -2.2731 -3.3574 29 1 -0.4879 -3.5141 -3.5161 30 1 -1.5613 -5.7294 -3.4588 31 1 -0.4534 -7.6049 -2.3106 32 1 1.7304 -7.2665 -1.2245 33 1 2.8064 -5.0526 -1.2867 34 1 2.2491 -1.6317 1.1527 35 1 3.0617 -0.4621 5.4348 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306826781.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:44 Heat of formation + Delta-G solvation = -11.422434 kcal Electronic energy + Delta-G solvation = -16190.809096 eV Core-core repulsion = 13575.141391 eV Total energy + Delta-G solvation = -2615.667704 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.37832 -37.76093 -35.16172 -32.28207 -31.47522 -30.94324 -29.14767 -26.46657 -25.29682 -23.12366 -22.62414 -21.33237 -19.86500 -17.66446 -16.92008 -16.28551 -15.87678 -15.41141 -14.78880 -14.30229 -14.21168 -13.50396 -13.41943 -12.98507 -12.73991 -12.49899 -12.31476 -12.09249 -11.74402 -11.22797 -11.04092 -10.94235 -10.78980 -10.55700 -10.23134 -9.93601 -9.53848 -9.32761 -8.95684 -8.86967 -8.85656 -7.18273 -5.70651 -3.04515 1.23588 1.36446 3.43976 3.51049 3.52598 3.59064 4.23417 4.67172 4.77537 4.85193 4.96300 5.07417 5.22370 5.33002 5.36611 5.47208 5.57884 5.61038 5.66438 5.74563 5.92333 5.93268 5.99732 6.23133 6.39058 6.44317 6.44962 6.56403 6.58047 6.82205 6.93763 7.16085 7.48357 8.06920 8.49273 9.29648 10.02433 10.24297 11.47891 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.024595 B = 0.006706 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.159879 B = 4174.517992 C = 4904.989138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.181 3.819 3 H 0.066 0.934 4 C 0.054 3.946 5 O -0.370 6.370 6 C 0.099 3.901 7 C -0.084 4.084 8 C -0.099 4.099 9 C -0.126 4.126 10 C -0.119 4.119 11 C -0.124 4.124 12 C -0.098 4.098 13 N -0.745 5.745 14 C -0.240 4.240 15 H 0.090 0.910 16 C 0.004 3.996 17 N -0.937 5.937 18 Si 0.880 3.120 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.272 1.272 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.035 0.965 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.366 0.634 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.612 -10.081 -18.160 21.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.071 3.929 3 H 0.084 0.916 4 C -0.023 4.023 5 O -0.289 6.289 6 C 0.022 3.978 7 C -0.084 4.084 8 C -0.118 4.118 9 C -0.144 4.144 10 C -0.137 4.137 11 C -0.142 4.142 12 C -0.116 4.116 13 N -0.389 5.389 14 C -0.370 4.370 15 H 0.107 0.893 16 C -0.192 4.192 17 N -0.585 5.585 18 Si 0.710 3.290 19 H -0.212 1.212 20 H -0.219 1.219 21 H -0.198 1.198 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.199 0.801 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.726 -9.963 -17.839 20.770 hybrid contribution 0.460 -1.212 -0.024 1.297 sum -3.266 -11.176 -17.863 21.323 Atomic orbital electron populations 1.22298 0.98411 1.01512 0.99809 1.20283 0.92919 0.94860 0.84809 0.91637 1.23040 0.97244 0.83191 0.98823 1.88060 1.69971 1.26824 1.44033 1.21274 0.97525 0.89131 0.89829 1.19671 0.95594 0.94420 0.98705 1.21059 0.94343 0.97182 0.99173 1.21120 0.99925 0.93165 1.00180 1.21160 0.95536 0.98968 0.98028 1.21150 0.95882 0.97285 0.99879 1.21129 1.00333 0.92668 0.97491 1.42761 1.79500 1.09697 1.06940 1.19108 1.36523 0.95460 0.85942 0.89253 1.24639 1.01586 0.97436 0.95518 1.69708 1.52956 1.35566 1.00244 0.86579 0.78446 0.87057 0.76869 1.21240 1.21874 1.19796 0.92682 0.92716 0.94636 0.93190 0.93516 0.92766 0.92851 0.85993 0.86081 0.86199 0.86012 0.85886 0.80071 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.29 37.16 0.35 -2.69 16 2 C 0.18 3.61 3.29 -67.94 -0.22 3.39 16 3 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 4 C 0.05 0.89 5.68 37.15 0.21 1.10 16 5 O -0.37 -6.35 9.18 -35.23 -0.32 -6.67 16 6 C 0.10 1.33 6.06 36.01 0.22 1.55 16 7 C -0.08 -1.14 5.51 -104.63 -0.58 -1.71 16 8 C -0.10 -1.21 9.70 -39.58 -0.38 -1.59 16 9 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 10 C -0.12 -1.29 10.05 -39.59 -0.40 -1.69 16 11 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 12 C -0.10 -1.30 9.70 -39.59 -0.38 -1.69 16 13 N -0.75 -18.48 4.91 -53.43 -0.26 -18.75 16 14 C -0.24 -6.96 10.41 -15.06 -0.16 -7.12 16 15 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 16 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 17 N -0.94 -30.06 13.97 55.49 0.78 -29.29 16 18 Si 0.88 23.01 27.74 -169.99 -4.71 18.30 16 19 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 20 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 21 H -0.27 -6.91 6.52 56.52 0.37 -6.54 16 22 H 0.05 1.10 7.56 -51.93 -0.39 0.70 16 23 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 28 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 29 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 30 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 34 H 0.37 9.19 5.44 -40.82 -0.22 8.97 16 35 H 0.26 7.90 8.31 -40.82 -0.34 7.57 16 LS Contribution 298.29 15.07 4.50 4.50 Total: -1.00 -33.04 298.29 -7.54 -40.58 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.27 Total: 5.41 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -2.24 Total: -14.08 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.51 Total: -48.03 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.32 Total: -6.67 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.71 Total: 18.30 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.04 -7.54 -40.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306826781.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.157 kcal (2) G-P(sol) polarization free energy of solvation -33.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds