Wall clock time and date at job start Mon Mar 30 2020 03:01:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09003 * 109.46761 * 2 1
4 4 C 1.52991 * 109.47550 * 240.00243 * 2 1 3
5 5 O 1.42903 * 109.47131 * 304.99767 * 4 2 1
6 6 C 1.42899 * 114.00342 * 180.02562 * 5 4 2
7 7 C 1.50701 * 109.47103 * 180.02562 * 6 5 4
8 8 C 1.38235 * 119.99808 * 89.99842 * 7 6 5
9 9 C 1.38243 * 119.99602 * 179.97438 * 8 7 6
10 10 C 1.38231 * 120.00070 * 0.07188 * 9 8 7
11 11 C 1.38234 * 119.99892 * 359.90902 * 10 9 8
12 12 C 1.38230 * 119.99865 * 269.97588 * 7 6 5
13 13 N 1.46499 * 109.47385 * 119.99601 * 2 1 3
14 14 C 1.36939 * 120.00246 * 275.00972 * 13 2 1
15 15 H 1.08000 * 119.99914 * 359.97438 * 14 13 2
16 16 C 1.38817 * 119.99674 * 180.02562 * 14 13 2
17 17 N 1.31620 * 119.99391 * 179.97438 * 16 14 13
18 18 Si 1.86796 * 120.00325 * 359.97438 * 16 14 13
19 19 H 1.48500 * 109.46906 * 90.00623 * 18 16 14
20 20 H 1.48500 * 109.47118 * 210.00274 * 18 16 14
21 21 H 1.48503 * 109.46950 * 330.00460 * 18 16 14
22 22 H 1.09003 * 109.46761 * 179.97438 * 1 2 3
23 23 H 1.08995 * 109.47241 * 299.99651 * 1 2 3
24 24 H 1.08994 * 109.47416 * 60.00224 * 1 2 3
25 25 H 1.08999 * 109.47303 * 184.99975 * 4 2 1
26 26 H 1.08994 * 109.47466 * 64.99431 * 4 2 1
27 27 H 1.08993 * 109.47528 * 59.99500 * 6 5 4
28 28 H 1.09001 * 109.46686 * 299.99411 * 6 5 4
29 29 H 1.08000 * 120.00616 * 359.70324 * 8 7 6
30 30 H 1.08001 * 119.99556 * 179.97438 * 9 8 7
31 31 H 1.07997 * 119.99633 * 179.97438 * 10 9 8
32 32 H 1.07999 * 119.99751 * 180.02562 * 11 10 9
33 33 H 1.08001 * 120.00371 * 0.02562 * 12 7 6
34 34 H 0.97005 * 119.99878 * 95.00000 * 13 2 1
35 35 H 0.97006 * 119.99877 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0401 -0.7211 -1.2492
5 8 1.4703 -2.0303 -1.3094
6 6 1.8847 -2.7929 -2.4447
7 6 1.2263 -4.1480 -2.4070
8 6 0.0004 -4.3379 -3.0168
9 6 -0.6033 -5.5811 -2.9827
10 6 0.0184 -6.6338 -2.3376
11 6 1.2445 -6.4439 -1.7282
12 6 1.8486 -5.2010 -1.7631
13 7 2.0184 -0.6905 1.1962
14 6 2.1490 -0.0074 2.3758
15 1 1.8924 1.0406 2.4242
16 6 2.6123 -0.6617 3.5091
17 7 2.7383 -0.0049 4.6427
18 14 3.0568 -2.4740 3.4251
19 1 4.4895 -2.6159 3.0609
20 1 2.8179 -3.1041 4.7484
21 1 2.2166 -3.1428 2.3994
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3633 0.5138 0.8900
24 1 -0.3634 0.5138 -0.8899
25 1 3.1264 -0.7993 -1.2055
26 1 1.7517 -0.1583 -2.1369
27 1 2.9677 -2.9140 -2.4255
28 1 1.5933 -2.2731 -3.3574
29 1 -0.4879 -3.5141 -3.5161
30 1 -1.5613 -5.7294 -3.4588
31 1 -0.4534 -7.6049 -2.3106
32 1 1.7304 -7.2665 -1.2245
33 1 2.8064 -5.0526 -1.2867
34 1 2.2491 -1.6317 1.1527
35 1 3.0617 -0.4621 5.4348
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000306826781.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:01:44
Heat of formation + Delta-G solvation = -11.422434 kcal
Electronic energy + Delta-G solvation = -16190.809096 eV
Core-core repulsion = 13575.141391 eV
Total energy + Delta-G solvation = -2615.667704 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 235.131 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-39.37832 -37.76093 -35.16172 -32.28207 -31.47522 -30.94324 -29.14767 -26.46657
-25.29682 -23.12366 -22.62414 -21.33237 -19.86500 -17.66446 -16.92008 -16.28551
-15.87678 -15.41141 -14.78880 -14.30229 -14.21168 -13.50396 -13.41943 -12.98507
-12.73991 -12.49899 -12.31476 -12.09249 -11.74402 -11.22797 -11.04092 -10.94235
-10.78980 -10.55700 -10.23134 -9.93601 -9.53848 -9.32761 -8.95684 -8.86967
-8.85656 -7.18273 -5.70651 -3.04515 1.23588 1.36446 3.43976 3.51049
3.52598 3.59064 4.23417 4.67172 4.77537 4.85193 4.96300 5.07417
5.22370 5.33002 5.36611 5.47208 5.57884 5.61038 5.66438 5.74563
5.92333 5.93268 5.99732 6.23133 6.39058 6.44317 6.44962 6.56403
6.58047 6.82205 6.93763 7.16085 7.48357 8.06920 8.49273 9.29648
10.02433 10.24297 11.47891
Molecular weight = 235.13amu
Principal moments of inertia in cm(-1)
A = 0.024595 B = 0.006706 C = 0.005707
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1138.159879 B = 4174.517992 C = 4904.989138
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.181 3.819
3 H 0.066 0.934
4 C 0.054 3.946
5 O -0.370 6.370
6 C 0.099 3.901
7 C -0.084 4.084
8 C -0.099 4.099
9 C -0.126 4.126
10 C -0.119 4.119
11 C -0.124 4.124
12 C -0.098 4.098
13 N -0.745 5.745
14 C -0.240 4.240
15 H 0.090 0.910
16 C 0.004 3.996
17 N -0.937 5.937
18 Si 0.880 3.120
19 H -0.286 1.286
20 H -0.292 1.292
21 H -0.272 1.272
22 H 0.054 0.946
23 H 0.054 0.946
24 H 0.035 0.965
25 H 0.050 0.950
26 H 0.047 0.953
27 H 0.054 0.946
28 H 0.053 0.947
29 H 0.122 0.878
30 H 0.121 0.879
31 H 0.120 0.880
32 H 0.122 0.878
33 H 0.123 0.877
34 H 0.366 0.634
35 H 0.258 0.742
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.612 -10.081 -18.160 21.082
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.071 3.929
3 H 0.084 0.916
4 C -0.023 4.023
5 O -0.289 6.289
6 C 0.022 3.978
7 C -0.084 4.084
8 C -0.118 4.118
9 C -0.144 4.144
10 C -0.137 4.137
11 C -0.142 4.142
12 C -0.116 4.116
13 N -0.389 5.389
14 C -0.370 4.370
15 H 0.107 0.893
16 C -0.192 4.192
17 N -0.585 5.585
18 Si 0.710 3.290
19 H -0.212 1.212
20 H -0.219 1.219
21 H -0.198 1.198
22 H 0.073 0.927
23 H 0.073 0.927
24 H 0.054 0.946
25 H 0.068 0.932
26 H 0.065 0.935
27 H 0.072 0.928
28 H 0.071 0.929
29 H 0.140 0.860
30 H 0.139 0.861
31 H 0.138 0.862
32 H 0.140 0.860
33 H 0.141 0.859
34 H 0.199 0.801
35 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -3.726 -9.963 -17.839 20.770
hybrid contribution 0.460 -1.212 -0.024 1.297
sum -3.266 -11.176 -17.863 21.323
Atomic orbital electron populations
1.22298 0.98411 1.01512 0.99809 1.20283 0.92919 0.94860 0.84809
0.91637 1.23040 0.97244 0.83191 0.98823 1.88060 1.69971 1.26824
1.44033 1.21274 0.97525 0.89131 0.89829 1.19671 0.95594 0.94420
0.98705 1.21059 0.94343 0.97182 0.99173 1.21120 0.99925 0.93165
1.00180 1.21160 0.95536 0.98968 0.98028 1.21150 0.95882 0.97285
0.99879 1.21129 1.00333 0.92668 0.97491 1.42761 1.79500 1.09697
1.06940 1.19108 1.36523 0.95460 0.85942 0.89253 1.24639 1.01586
0.97436 0.95518 1.69708 1.52956 1.35566 1.00244 0.86579 0.78446
0.87057 0.76869 1.21240 1.21874 1.19796 0.92682 0.92716 0.94636
0.93190 0.93516 0.92766 0.92851 0.85993 0.86081 0.86199 0.86012
0.85886 0.80071 0.93176
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.04 9.29 37.16 0.35 -2.69 16
2 C 0.18 3.61 3.29 -67.94 -0.22 3.39 16
3 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16
4 C 0.05 0.89 5.68 37.15 0.21 1.10 16
5 O -0.37 -6.35 9.18 -35.23 -0.32 -6.67 16
6 C 0.10 1.33 6.06 36.01 0.22 1.55 16
7 C -0.08 -1.14 5.51 -104.63 -0.58 -1.71 16
8 C -0.10 -1.21 9.70 -39.58 -0.38 -1.59 16
9 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16
10 C -0.12 -1.29 10.05 -39.59 -0.40 -1.69 16
11 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16
12 C -0.10 -1.30 9.70 -39.59 -0.38 -1.69 16
13 N -0.75 -18.48 4.91 -53.43 -0.26 -18.75 16
14 C -0.24 -6.96 10.41 -15.06 -0.16 -7.12 16
15 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16
16 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16
17 N -0.94 -30.06 13.97 55.49 0.78 -29.29 16
18 Si 0.88 23.01 27.74 -169.99 -4.71 18.30 16
19 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16
20 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16
21 H -0.27 -6.91 6.52 56.52 0.37 -6.54 16
22 H 0.05 1.10 7.56 -51.93 -0.39 0.70 16
23 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16
24 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16
25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16
26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
27 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16
28 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16
29 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16
30 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16
31 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16
32 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16
33 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16
34 H 0.37 9.19 5.44 -40.82 -0.22 8.97 16
35 H 0.26 7.90 8.31 -40.82 -0.34 7.57 16
LS Contribution 298.29 15.07 4.50 4.50
Total: -1.00 -33.04 298.29 -7.54 -40.58
By element:
Atomic # 1 Polarization: 10.68 SS G_CDS: -5.27 Total: 5.41 kcal
Atomic # 6 Polarization: -11.84 SS G_CDS: -2.24 Total: -14.08 kcal
Atomic # 7 Polarization: -48.55 SS G_CDS: 0.51 Total: -48.03 kcal
Atomic # 8 Polarization: -6.35 SS G_CDS: -0.32 Total: -6.67 kcal
Atomic # 14 Polarization: 23.01 SS G_CDS: -4.71 Total: 18.30 kcal
Total LS contribution 4.50 Total: 4.50 kcal
Total: -33.04 -7.54 -40.58 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000306826781.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.157 kcal
(2) G-P(sol) polarization free energy of solvation -33.040 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.883 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.579 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.422 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds