Wall clock time and date at job start Mon Mar 30 2020 03:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46761 * 2 1 4 4 C 1.52991 * 109.47550 * 240.00243 * 2 1 3 5 5 O 1.42903 * 109.47131 * 304.99767 * 4 2 1 6 6 C 1.42899 * 114.00342 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47103 * 180.02562 * 6 5 4 8 8 C 1.38235 * 119.99808 * 89.99842 * 7 6 5 9 9 C 1.38243 * 119.99602 * 179.97438 * 8 7 6 10 10 C 1.38231 * 120.00070 * 0.07188 * 9 8 7 11 11 C 1.38234 * 119.99892 * 359.90902 * 10 9 8 12 12 C 1.38230 * 119.99865 * 269.97588 * 7 6 5 13 13 N 1.46499 * 109.47385 * 119.99601 * 2 1 3 14 14 C 1.36939 * 120.00246 * 275.00972 * 13 2 1 15 15 H 1.08000 * 119.99914 * 359.97438 * 14 13 2 16 16 C 1.38817 * 119.99674 * 180.02562 * 14 13 2 17 17 N 1.31620 * 119.99391 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00325 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46906 * 90.00623 * 18 16 14 20 20 H 1.48500 * 109.47118 * 210.00274 * 18 16 14 21 21 H 1.48503 * 109.46950 * 330.00460 * 18 16 14 22 22 H 1.09003 * 109.46761 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47241 * 299.99651 * 1 2 3 24 24 H 1.08994 * 109.47416 * 60.00224 * 1 2 3 25 25 H 1.08999 * 109.47303 * 184.99975 * 4 2 1 26 26 H 1.08994 * 109.47466 * 64.99431 * 4 2 1 27 27 H 1.08993 * 109.47528 * 59.99500 * 6 5 4 28 28 H 1.09001 * 109.46686 * 299.99411 * 6 5 4 29 29 H 1.08000 * 120.00616 * 359.70324 * 8 7 6 30 30 H 1.08001 * 119.99556 * 179.97438 * 9 8 7 31 31 H 1.07997 * 119.99633 * 179.97438 * 10 9 8 32 32 H 1.07999 * 119.99751 * 180.02562 * 11 10 9 33 33 H 1.08001 * 120.00371 * 0.02562 * 12 7 6 34 34 H 0.97005 * 119.99878 * 95.00000 * 13 2 1 35 35 H 0.97006 * 119.99877 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 8 1.4703 -2.0303 -1.3094 6 6 1.8847 -2.7929 -2.4447 7 6 1.2263 -4.1480 -2.4070 8 6 0.0004 -4.3379 -3.0168 9 6 -0.6033 -5.5811 -2.9827 10 6 0.0184 -6.6338 -2.3376 11 6 1.2445 -6.4439 -1.7282 12 6 1.8486 -5.2010 -1.7631 13 7 2.0184 -0.6905 1.1962 14 6 2.1490 -0.0074 2.3758 15 1 1.8924 1.0406 2.4242 16 6 2.6123 -0.6617 3.5091 17 7 2.7383 -0.0049 4.6427 18 14 3.0568 -2.4740 3.4251 19 1 4.4895 -2.6159 3.0609 20 1 2.8179 -3.1041 4.7484 21 1 2.2166 -3.1428 2.3994 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 3.1264 -0.7993 -1.2055 26 1 1.7517 -0.1583 -2.1369 27 1 2.9677 -2.9140 -2.4255 28 1 1.5933 -2.2731 -3.3574 29 1 -0.4879 -3.5141 -3.5161 30 1 -1.5613 -5.7294 -3.4588 31 1 -0.4534 -7.6049 -2.3106 32 1 1.7304 -7.2665 -1.2245 33 1 2.8064 -5.0526 -1.2867 34 1 2.2491 -1.6317 1.1527 35 1 3.0617 -0.4621 5.4348 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306826781.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:44 Heat of formation + Delta-G solvation = -32.243113 kcal Electronic energy + Delta-G solvation = -16191.711948 eV Core-core repulsion = 13575.141391 eV Total energy + Delta-G solvation = -2616.570556 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.29826 -39.01858 -36.85413 -34.12574 -32.72947 -31.79743 -31.03024 -27.68154 -26.49442 -25.18764 -23.48619 -22.23109 -21.53335 -19.76805 -17.89126 -17.52633 -17.00180 -16.45496 -16.42801 -15.85899 -15.44757 -15.00965 -14.57474 -14.34295 -14.28563 -13.80173 -13.68320 -13.57592 -13.01933 -12.88636 -12.61710 -12.38981 -12.05065 -11.91369 -11.83190 -11.76053 -11.58229 -11.00513 -10.50517 -9.83100 -9.75698 -9.30288 -8.02199 -5.33201 0.34427 0.49021 1.35799 1.38524 1.47247 2.48217 2.62719 3.17043 3.31785 3.64620 3.90392 3.92243 4.14485 4.17774 4.28532 4.34131 4.40508 4.46156 4.56613 4.65853 4.68424 4.76650 4.91838 5.04820 5.07630 5.14619 5.23956 5.53918 5.59313 5.59568 5.67725 5.78404 6.09413 6.21739 6.34123 7.09644 7.88068 8.07249 9.19634 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.024595 B = 0.006706 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.159879 B = 4174.517992 C = 4904.989138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.167 3.833 3 H 0.066 0.934 4 C 0.063 3.937 5 O -0.396 6.396 6 C 0.097 3.903 7 C -0.106 4.106 8 C -0.110 4.110 9 C -0.130 4.130 10 C -0.122 4.122 11 C -0.134 4.134 12 C -0.122 4.122 13 N -0.750 5.750 14 C -0.225 4.225 15 H 0.061 0.939 16 C -0.063 4.063 17 N -0.984 5.984 18 Si 0.949 3.051 19 H -0.276 1.276 20 H -0.296 1.296 21 H -0.261 1.261 22 H 0.043 0.957 23 H 0.028 0.972 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.135 0.865 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.138 0.862 33 H 0.119 0.881 34 H 0.365 0.635 35 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.209 -11.606 -20.451 23.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.059 3.941 3 H 0.084 0.916 4 C -0.014 4.014 5 O -0.316 6.316 6 C 0.021 3.979 7 C -0.106 4.106 8 C -0.128 4.128 9 C -0.147 4.147 10 C -0.140 4.140 11 C -0.152 4.152 12 C -0.140 4.140 13 N -0.394 5.394 14 C -0.356 4.356 15 H 0.079 0.921 16 C -0.255 4.255 17 N -0.635 5.635 18 Si 0.777 3.223 19 H -0.203 1.203 20 H -0.223 1.223 21 H -0.187 1.187 22 H 0.062 0.938 23 H 0.048 0.952 24 H 0.091 0.909 25 H 0.069 0.931 26 H 0.102 0.898 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.153 0.847 30 H 0.165 0.835 31 H 0.164 0.836 32 H 0.156 0.844 33 H 0.137 0.863 34 H 0.198 0.802 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.335 -11.486 -20.196 23.634 hybrid contribution 0.574 -0.693 0.596 1.079 sum -3.761 -12.179 -19.599 23.380 Atomic orbital electron populations 1.22134 0.97416 1.00914 1.00391 1.20608 0.93547 0.95174 0.84747 0.91580 1.22854 0.97080 0.83459 0.97961 1.88008 1.70418 1.27184 1.46036 1.21439 0.97949 0.89014 0.89461 1.19842 0.96522 0.94500 0.99748 1.21322 0.94055 0.98281 0.99183 1.21496 1.00814 0.92704 0.99724 1.21540 0.95135 1.00217 0.97097 1.21440 0.96462 0.97274 1.00055 1.21308 1.00726 0.93631 0.98360 1.42823 1.79795 1.09664 1.07121 1.19111 1.34467 0.94484 0.87536 0.92094 1.25401 1.02742 1.02062 0.95263 1.69873 1.55074 1.37511 1.01088 0.85475 0.78574 0.81504 0.76699 1.20254 1.22270 1.18656 0.93764 0.95250 0.90897 0.93096 0.89774 0.92243 0.90516 0.84669 0.83543 0.83610 0.84420 0.86267 0.80158 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.42 9.29 71.98 0.67 -4.76 16 2 C 0.17 6.44 3.29 44.99 0.15 6.58 16 3 H 0.07 2.54 8.08 -2.39 -0.02 2.52 16 4 C 0.06 1.90 5.68 71.98 0.41 2.31 16 5 O -0.40 -12.73 9.18 -148.98 -1.37 -14.10 16 6 C 0.10 2.39 6.06 71.24 0.43 2.83 16 7 C -0.11 -2.69 5.51 -19.87 -0.11 -2.80 16 8 C -0.11 -2.44 9.70 22.27 0.22 -2.22 16 9 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 10 C -0.12 -2.32 10.05 22.27 0.22 -2.10 16 11 C -0.13 -2.93 10.05 22.27 0.22 -2.70 16 12 C -0.12 -3.11 9.70 22.27 0.22 -2.90 16 13 N -0.75 -36.79 4.91 -322.95 -1.58 -38.38 16 14 C -0.22 -13.20 10.41 84.03 0.87 -12.33 16 15 H 0.06 3.86 8.06 -2.91 -0.02 3.83 16 16 C -0.06 -3.87 5.50 84.86 0.47 -3.40 16 17 N -0.98 -64.66 13.97 21.65 0.30 -64.36 16 18 Si 0.95 48.04 27.74 68.60 1.90 49.94 16 19 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 20 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 21 H -0.26 -12.60 6.52 99.48 0.65 -11.95 16 22 H 0.04 1.69 7.56 -2.39 -0.02 1.68 16 23 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.06 1.37 8.09 -2.39 -0.02 1.35 16 28 H 0.08 1.49 8.08 -2.39 -0.02 1.47 16 29 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 30 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 31 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 32 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 33 H 0.12 2.97 8.06 -2.91 -0.02 2.94 16 34 H 0.37 17.92 5.44 -92.70 -0.50 17.42 16 35 H 0.26 16.08 8.31 -92.70 -0.77 15.31 16 Total: -1.00 -71.58 298.29 3.74 -67.84 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 0.49 Total: 22.80 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: 3.99 Total: -23.74 kcal Atomic # 7 Polarization: -101.46 SS G_CDS: -1.28 Total: -102.74 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -1.37 Total: -14.10 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 1.90 Total: 49.94 kcal Total: -71.58 3.74 -67.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306826781.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.600 kcal (2) G-P(sol) polarization free energy of solvation -71.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds