Wall clock time and date at job start Mon Mar 30 2020 03:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86794 * 120.00417 * 2 1 4 4 H 1.48504 * 109.46951 * 269.99997 * 3 2 1 5 5 H 1.48501 * 109.47072 * 29.99784 * 3 2 1 6 6 H 1.48503 * 109.47449 * 149.99763 * 3 2 1 7 7 C 1.37884 * 119.99587 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99740 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00449 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47509 * 174.36495 * 9 7 2 11 11 C 1.46892 * 110.99848 * 161.83151 * 10 9 7 12 12 C 1.53000 * 109.47002 * 190.00000 * 11 10 9 13 13 N 1.46500 * 109.47431 * 180.02562 * 12 11 10 14 14 C 1.36878 * 126.39712 * 90.00065 * 13 12 11 15 15 C 1.34677 * 106.81665 * 179.74251 * 14 13 12 16 16 N 1.34126 * 108.01797 * 0.21940 * 15 14 13 17 17 C 1.30499 * 109.25826 * 0.02562 * 16 15 14 18 18 C 1.46904 * 110.99957 * 285.78678 * 10 9 7 19 19 C 1.52993 * 117.49935 * 137.90944 * 18 10 9 20 20 C 1.53000 * 60.00242 * 252.51509 * 19 18 10 21 21 H 0.97002 * 120.00035 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.46982 * 54.36272 * 9 7 2 23 23 H 1.08997 * 109.47229 * 294.36679 * 9 7 2 24 24 H 1.09001 * 109.47281 * 70.00030 * 11 10 9 25 25 H 1.09002 * 109.47691 * 310.00012 * 11 10 9 26 26 H 1.09001 * 109.47078 * 59.99905 * 12 11 10 27 27 H 1.09002 * 109.47166 * 300.00007 * 12 11 10 28 28 H 1.07992 * 126.59372 * 0.02562 * 14 13 12 29 29 H 1.07995 * 125.98919 * 180.22996 * 15 14 13 30 30 H 1.08005 * 125.65054 * 179.97438 * 17 16 15 31 31 H 1.08999 * 115.54945 * 283.62038 * 18 10 9 32 32 H 1.09006 * 117.49735 * 0.02562 * 19 18 10 33 33 H 1.09000 * 117.50274 * 145.02026 * 19 18 10 34 34 H 1.09008 * 117.49186 * 252.51852 * 20 19 18 35 35 H 1.08994 * 117.52245 * 107.48285 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.1998 -3.6125 -0.1348 11 6 1.5873 -4.8801 0.2847 12 6 2.6642 -5.9636 0.3687 13 7 2.0534 -7.2280 0.7865 14 6 1.5341 -8.1903 -0.0369 15 6 1.0842 -9.1809 0.7569 16 7 1.3180 -8.8306 2.0304 17 6 1.8951 -7.6605 2.0560 18 6 2.7112 -3.7043 -1.5089 19 6 4.2043 -3.9844 -1.6898 20 6 3.6452 -2.5923 -1.9907 21 1 -0.4850 0.8401 -0.0004 22 1 0.5511 -2.5146 -0.8349 23 1 0.7018 -2.6017 0.9364 24 1 0.8303 -5.1758 -0.4417 25 1 1.1226 -4.7531 1.2625 26 1 3.4213 -5.6679 1.0950 27 1 3.1289 -6.0907 -0.6091 28 1 1.4969 -8.1627 -1.1158 29 1 0.6173 -10.0967 0.4261 30 1 2.1996 -7.1280 2.9450 31 1 2.0257 -4.1368 -2.2378 32 1 4.8072 -4.1010 -0.7891 33 1 4.5016 -4.6015 -2.5376 34 1 3.5746 -2.2938 -3.0367 35 1 3.8800 -1.7926 -1.2883 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308751161.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:53 Heat of formation + Delta-G solvation = 80.963044 kcal Electronic energy + Delta-G solvation = -16359.677306 eV Core-core repulsion = 13780.308488 eV Total energy + Delta-G solvation = -2579.368818 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.89953 -39.48542 -35.90152 -35.18216 -33.86327 -30.61379 -30.10317 -27.85532 -24.31991 -24.13711 -23.03854 -22.21022 -21.73723 -21.06977 -18.68276 -18.18494 -16.80438 -16.55797 -16.42316 -15.88761 -15.43358 -15.08016 -14.63798 -14.50429 -14.29222 -13.99519 -13.87356 -13.56288 -12.99525 -12.70053 -12.61470 -12.35164 -12.30320 -11.80989 -11.27256 -11.07707 -10.91566 -10.80168 -10.55614 -10.49066 -9.42562 -9.16179 -8.17531 -6.25124 1.17227 1.42519 1.43408 1.54058 1.88490 2.25020 2.41796 3.00212 3.15517 3.24856 3.75950 3.90719 3.93186 4.10949 4.18782 4.26721 4.37062 4.41370 4.57389 4.65044 4.80197 4.85054 4.88557 4.92147 5.08875 5.17670 5.34313 5.41660 5.48483 5.77427 5.86372 6.04646 6.27592 6.32311 6.54575 6.89837 7.16130 7.43040 8.93724 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.036739 B = 0.005548 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.947264 B = 5045.287667 C = 5489.986482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.000 4.000 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.504 4.504 8 H 0.076 0.924 9 C 0.211 3.789 10 N -0.506 5.506 11 C 0.052 3.948 12 C 0.125 3.875 13 N -0.455 5.455 14 C -0.056 4.056 15 C -0.055 4.055 16 N -0.536 5.536 17 C 0.173 3.827 18 C -0.005 4.005 19 C -0.142 4.142 20 C -0.173 4.173 21 H 0.261 0.739 22 H -0.036 1.036 23 H -0.002 1.002 24 H 0.020 0.980 25 H 0.061 0.939 26 H 0.111 0.889 27 H 0.108 0.892 28 H 0.195 0.805 29 H 0.185 0.815 30 H 0.223 0.777 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.750 -11.807 -3.002 14.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.199 1.199 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.543 4.543 8 H 0.094 0.906 9 C 0.085 3.915 10 N -0.231 5.231 11 C -0.077 4.077 12 C 0.003 3.997 13 N -0.137 5.137 14 C -0.189 4.189 15 C -0.202 4.202 16 N -0.255 5.255 17 C -0.110 4.110 18 C -0.114 4.114 19 C -0.180 4.180 20 C -0.210 4.210 21 H 0.070 0.930 22 H -0.018 1.018 23 H 0.016 0.984 24 H 0.039 0.961 25 H 0.080 0.920 26 H 0.130 0.870 27 H 0.127 0.873 28 H 0.212 0.788 29 H 0.202 0.798 30 H 0.239 0.761 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.134 0.866 34 H 0.110 0.890 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.873 -11.936 -2.042 14.444 hybrid contribution -0.951 1.468 -1.138 2.087 sum 6.922 -10.467 -3.180 12.946 Atomic orbital electron populations 1.70094 1.07840 1.27638 1.52567 1.25867 0.95558 1.03033 0.95309 0.85477 0.78721 0.78708 0.78334 1.19941 1.21439 1.18554 1.21536 0.93925 0.90206 1.48605 0.90590 1.19368 0.89758 0.89056 0.93322 1.61795 1.37637 1.02362 1.21260 1.22272 0.95412 0.90144 0.99920 1.21826 0.94902 0.79001 1.03997 1.45734 1.44171 1.16349 1.07415 1.23194 1.05635 0.91199 0.98922 1.22686 1.07191 1.01777 0.88592 1.70255 1.18490 1.13184 1.23567 1.25480 1.02857 0.93769 0.88875 1.22251 0.93158 1.06174 0.89833 1.23141 0.93227 0.98190 1.03428 1.23109 1.03238 0.93363 1.01322 0.92986 1.01819 0.98404 0.96137 0.92043 0.87033 0.87349 0.78778 0.79842 0.76051 0.91135 0.88135 0.86625 0.89020 0.88893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.77 13.29 21.45 0.28 -55.48 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 3 Si 0.96 42.90 29.54 68.60 2.03 44.92 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.50 -26.85 7.82 25.60 0.20 -26.64 16 8 H 0.08 3.89 5.55 -2.91 -0.02 3.87 16 9 C 0.21 10.70 4.75 85.55 0.41 11.11 16 10 N -0.51 -19.57 4.58 -875.55 -4.01 -23.58 16 11 C 0.05 1.67 5.27 86.30 0.45 2.13 16 12 C 0.13 2.93 5.97 86.38 0.52 3.45 16 13 N -0.45 -11.07 2.75 -529.06 -1.46 -12.53 16 14 C -0.06 -1.29 11.58 83.09 0.96 -0.32 16 15 C -0.06 -1.40 11.87 83.53 0.99 -0.41 16 16 N -0.54 -15.86 11.25 -200.31 -2.25 -18.11 16 17 C 0.17 4.46 12.56 180.26 2.26 6.73 16 18 C -0.01 -0.18 4.20 44.91 0.19 0.01 16 19 C -0.14 -3.60 9.31 30.59 0.28 -3.31 16 20 C -0.17 -5.80 9.41 30.59 0.29 -5.51 16 21 H 0.26 14.72 8.31 -92.71 -0.77 13.94 16 22 H -0.04 -2.05 8.02 -2.39 -0.02 -2.07 16 23 H 0.00 -0.12 7.76 -2.39 -0.02 -0.13 16 24 H 0.02 0.69 8.12 -2.39 -0.02 0.67 16 25 H 0.06 2.14 7.84 -2.39 -0.02 2.12 16 26 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.11 2.25 6.61 -2.39 -0.02 2.23 16 28 H 0.20 3.28 8.06 -2.91 -0.02 3.26 16 29 H 0.18 3.64 8.06 -2.91 -0.02 3.62 16 30 H 0.22 4.44 8.06 -2.91 -0.02 4.42 16 31 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 33 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.09 2.82 8.14 -2.38 -0.02 2.80 16 35 H 0.09 3.65 5.32 -2.39 -0.01 3.63 16 Total: -1.00 -65.68 293.35 2.67 -63.01 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 1.06 Total: 14.11 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 7.02 Total: -12.34 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -7.44 Total: -109.70 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -65.68 2.67 -63.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308751161.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.969 kcal (2) G-P(sol) polarization free energy of solvation -65.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds