Wall clock time and date at job start Mon Mar 30 2020 03:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38596 * 120.44676 * 2 1 4 4 C 1.38592 * 118.39880 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.44386 * 179.97438 * 4 3 2 6 6 N 1.32329 * 119.10609 * 0.02562 * 4 3 2 7 7 C 1.31796 * 120.81644 * 359.97438 * 6 4 3 8 8 C 1.50706 * 119.11883 * 179.97438 * 7 6 4 9 9 C 1.53000 * 109.47116 * 90.00161 * 8 7 6 10 10 N 1.46896 * 109.47074 * 179.97438 * 9 8 7 11 11 C 1.46906 * 111.00024 * 180.02562 * 10 9 8 12 12 C 1.50692 * 109.47176 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00188 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00186 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00299 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99777 * 359.97438 * 14 12 11 17 17 H 1.48509 * 109.47210 * 89.99876 * 16 14 12 18 18 H 1.48497 * 109.47196 * 209.99761 * 16 14 12 19 19 H 1.48501 * 109.46938 * 330.00140 * 16 14 12 20 20 N 1.31793 * 121.75561 * 0.25858 * 7 6 4 21 21 H 1.08995 * 109.47509 * 89.99827 * 1 2 3 22 22 H 1.09000 * 109.46901 * 210.00128 * 1 2 3 23 23 H 1.09004 * 109.47113 * 329.99533 * 1 2 3 24 24 H 1.08002 * 120.79705 * 0.04300 * 3 2 1 25 25 H 1.09001 * 109.46754 * 270.01860 * 5 4 3 26 26 H 1.08996 * 109.47340 * 30.02377 * 5 4 3 27 27 H 1.09004 * 109.46949 * 150.02764 * 5 4 3 28 28 H 1.09000 * 109.46646 * 209.99574 * 8 7 6 29 29 H 1.09000 * 109.47248 * 330.00292 * 8 7 6 30 30 H 1.09000 * 109.47214 * 300.00167 * 9 8 7 31 31 H 1.09008 * 109.47142 * 59.99333 * 9 8 7 32 32 H 1.00899 * 111.00333 * 303.94980 * 10 9 8 33 33 H 1.09000 * 109.46874 * 300.00255 * 11 10 9 34 34 H 1.09004 * 109.47166 * 59.99603 * 11 10 9 35 35 H 0.97001 * 119.99828 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2094 1.1948 0.0000 4 6 3.5944 1.1453 -0.0005 5 6 4.4040 2.4165 -0.0012 6 7 4.1964 -0.0331 -0.0016 7 6 3.4955 -1.1493 -0.0015 8 6 4.2205 -2.4705 -0.0033 9 6 4.4675 -2.9186 1.4386 10 7 5.1736 -4.2067 1.4368 11 6 5.4279 -4.6696 2.8077 12 6 6.1525 -5.9902 2.7657 13 1 6.3992 -6.4408 1.8158 14 6 6.5007 -6.6232 3.9401 15 7 7.1327 -7.7759 3.9035 16 14 6.0748 -5.8433 5.5833 17 1 4.7342 -6.3097 6.0199 18 1 7.0888 -6.2351 6.5949 19 1 6.0626 -4.3651 5.4413 20 7 2.1776 -1.1408 -0.0056 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5139 24 1 1.6898 2.1417 0.0007 25 1 4.5984 2.7228 -1.0290 26 1 3.8489 3.2010 0.5131 27 1 5.3503 2.2448 0.5119 28 1 3.6144 -3.2168 -0.5169 29 1 5.1750 -2.3605 -0.5181 30 1 5.0735 -2.1723 1.9523 31 1 3.5130 -3.0285 1.9535 32 1 4.6616 -4.8991 0.9110 33 1 6.0407 -3.9357 3.3311 34 1 4.4799 -4.7913 3.3318 35 1 7.3773 -8.2213 4.7298 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308955105.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:51 Heat of formation + Delta-G solvation = 32.613755 kcal Electronic energy + Delta-G solvation = -15635.318268 eV Core-core repulsion = 13053.852867 eV Total energy + Delta-G solvation = -2581.465400 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.23100 -36.12690 -34.91732 -33.99116 -32.37970 -30.13418 -29.53926 -27.74021 -26.70419 -23.42991 -21.87070 -21.15023 -21.05810 -17.82967 -16.76758 -15.93003 -15.50787 -15.31614 -15.02621 -14.27549 -13.82933 -13.73199 -13.47824 -13.20640 -12.95508 -12.74738 -12.56821 -12.38134 -12.25351 -12.10974 -11.34760 -10.93616 -10.89088 -10.58033 -10.37440 -10.35910 -9.79278 -9.39814 -9.28563 -9.23011 -8.57247 -7.48053 -6.03223 -4.00940 0.79915 0.97279 3.30851 3.38069 3.41854 3.58417 3.78666 3.92138 4.21094 4.44831 4.78081 4.87016 5.03416 5.04930 5.22739 5.26773 5.28633 5.31107 5.36637 5.42094 5.55741 5.65332 5.72669 5.77121 5.92287 6.27271 6.33267 6.45216 6.81186 7.00287 7.04413 7.63046 7.89732 8.10967 8.35596 8.67268 9.05026 9.58820 11.10085 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.035022 B = 0.004356 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.302478 B = 6425.759129 C = 6556.736185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.176 3.824 3 C -0.243 4.243 4 C 0.177 3.823 5 C -0.106 4.106 6 N -0.519 5.519 7 C 0.341 3.659 8 C -0.051 4.051 9 C 0.069 3.931 10 N -0.678 5.678 11 C 0.164 3.836 12 C -0.515 4.515 13 H 0.080 0.920 14 C 0.069 3.931 15 N -0.900 5.900 16 Si 0.877 3.123 17 H -0.277 1.277 18 H -0.285 1.285 19 H -0.267 1.267 20 N -0.523 5.523 21 H 0.084 0.916 22 H 0.083 0.917 23 H 0.078 0.922 24 H 0.143 0.857 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.022 0.978 32 H 0.336 0.664 33 H 0.027 0.973 34 H -0.020 1.020 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.344 20.839 -8.194 25.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.030 3.970 3 C -0.265 4.265 4 C 0.031 3.969 5 C -0.163 4.163 6 N -0.235 5.235 7 C 0.074 3.926 8 C -0.091 4.091 9 C -0.062 4.062 10 N -0.308 5.308 11 C 0.036 3.964 12 C -0.554 4.554 13 H 0.098 0.902 14 C -0.133 4.133 15 N -0.539 5.539 16 Si 0.705 3.295 17 H -0.203 1.203 18 H -0.211 1.211 19 H -0.192 1.192 20 N -0.238 5.238 21 H 0.102 0.898 22 H 0.102 0.898 23 H 0.097 0.903 24 H 0.161 0.839 25 H 0.102 0.898 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.118 0.882 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.154 0.846 33 H 0.045 0.955 34 H -0.003 1.003 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.163 20.129 -8.143 24.415 hybrid contribution -1.548 0.899 1.256 2.187 sum -12.712 21.028 -6.887 25.518 Atomic orbital electron populations 1.20775 0.87957 1.04027 1.03552 1.21760 0.97567 0.88236 0.89418 1.22514 0.95743 1.00353 1.07931 1.21776 0.91524 0.94293 0.89325 1.20780 1.00303 0.91685 1.03573 1.68177 1.41709 0.98251 1.15341 1.23316 0.86294 0.94565 0.88424 1.20462 1.00073 0.88897 0.99645 1.21766 0.96559 0.94427 0.93442 1.60481 1.49643 1.03275 1.17418 1.20012 0.94606 0.96632 0.85107 1.21063 1.36547 1.02723 0.95025 0.90165 1.24896 0.94766 0.94699 0.98935 1.69898 1.40474 1.15830 1.27739 0.86826 0.78316 0.80274 0.84113 1.20335 1.21102 1.19207 1.68164 1.09858 1.30248 1.15561 0.89767 0.89825 0.90272 0.83920 0.89753 0.90284 0.89728 0.89298 0.88207 0.91464 0.96031 0.84630 0.95538 1.00251 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.22 36.01 0.37 -0.45 16 2 C 0.18 2.06 6.82 -82.24 -0.56 1.50 16 3 C -0.24 -2.49 9.54 -39.32 -0.38 -2.86 16 4 C 0.18 2.08 6.82 -82.24 -0.56 1.52 16 5 C -0.11 -0.83 10.22 36.01 0.37 -0.46 16 6 N -0.52 -7.77 10.27 -6.99 -0.07 -7.84 16 7 C 0.34 5.31 6.90 -157.19 -1.08 4.22 16 8 C -0.05 -0.80 5.91 -27.88 -0.16 -0.97 16 9 C 0.07 1.27 5.67 -3.83 -0.02 1.25 16 10 N -0.68 -14.65 6.49 -115.06 -0.75 -15.40 16 11 C 0.16 4.17 4.51 -4.98 -0.02 4.14 16 12 C -0.52 -15.14 9.87 -34.44 -0.34 -15.48 16 13 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 14 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 15 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 16 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.27 -6.56 6.54 56.52 0.37 -6.19 16 20 N -0.52 -7.74 10.27 -6.99 -0.07 -7.81 16 21 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 24 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.34 6.91 8.72 -39.29 -0.34 6.56 16 33 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 34 H -0.02 -0.51 7.57 -51.93 -0.39 -0.90 16 35 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 300.41 15.07 4.53 4.53 Total: -1.00 -33.64 300.41 -8.10 -41.74 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -5.34 Total: 0.32 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -2.49 Total: -5.65 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.12 Total: -58.39 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.64 -8.10 -41.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308955105.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.349 kcal (2) G-P(sol) polarization free energy of solvation -33.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds