Wall clock time and date at job start Mon Mar 30 2020 03:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38596 * 120.44676 * 2 1 4 4 C 1.38592 * 118.39880 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.44386 * 179.97438 * 4 3 2 6 6 N 1.32329 * 119.10609 * 0.02562 * 4 3 2 7 7 C 1.31796 * 120.81644 * 359.97438 * 6 4 3 8 8 C 1.50706 * 119.11883 * 179.97438 * 7 6 4 9 9 C 1.53000 * 109.47116 * 90.00161 * 8 7 6 10 10 N 1.46896 * 109.47074 * 179.97438 * 9 8 7 11 11 C 1.46906 * 111.00024 * 180.02562 * 10 9 8 12 12 C 1.50692 * 109.47176 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00188 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00186 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00299 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99777 * 359.97438 * 14 12 11 17 17 H 1.48509 * 109.47210 * 89.99876 * 16 14 12 18 18 H 1.48497 * 109.47196 * 209.99761 * 16 14 12 19 19 H 1.48501 * 109.46938 * 330.00140 * 16 14 12 20 20 N 1.31793 * 121.75561 * 0.25858 * 7 6 4 21 21 H 1.08995 * 109.47509 * 89.99827 * 1 2 3 22 22 H 1.09000 * 109.46901 * 210.00128 * 1 2 3 23 23 H 1.09004 * 109.47113 * 329.99533 * 1 2 3 24 24 H 1.08002 * 120.79705 * 0.04300 * 3 2 1 25 25 H 1.09001 * 109.46754 * 270.01860 * 5 4 3 26 26 H 1.08996 * 109.47340 * 30.02377 * 5 4 3 27 27 H 1.09004 * 109.46949 * 150.02764 * 5 4 3 28 28 H 1.09000 * 109.46646 * 209.99574 * 8 7 6 29 29 H 1.09000 * 109.47248 * 330.00292 * 8 7 6 30 30 H 1.09000 * 109.47214 * 300.00167 * 9 8 7 31 31 H 1.09008 * 109.47142 * 59.99333 * 9 8 7 32 32 H 1.00899 * 111.00333 * 303.94980 * 10 9 8 33 33 H 1.09000 * 109.46874 * 300.00255 * 11 10 9 34 34 H 1.09004 * 109.47166 * 59.99603 * 11 10 9 35 35 H 0.97001 * 119.99828 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2094 1.1948 0.0000 4 6 3.5944 1.1453 -0.0005 5 6 4.4040 2.4165 -0.0012 6 7 4.1964 -0.0331 -0.0016 7 6 3.4955 -1.1493 -0.0015 8 6 4.2205 -2.4705 -0.0033 9 6 4.4675 -2.9186 1.4386 10 7 5.1736 -4.2067 1.4368 11 6 5.4279 -4.6696 2.8077 12 6 6.1525 -5.9902 2.7657 13 1 6.3992 -6.4408 1.8158 14 6 6.5007 -6.6232 3.9401 15 7 7.1327 -7.7759 3.9035 16 14 6.0748 -5.8433 5.5833 17 1 4.7342 -6.3097 6.0199 18 1 7.0888 -6.2351 6.5949 19 1 6.0626 -4.3651 5.4413 20 7 2.1776 -1.1408 -0.0056 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5139 24 1 1.6898 2.1417 0.0007 25 1 4.5984 2.7228 -1.0290 26 1 3.8489 3.2010 0.5131 27 1 5.3503 2.2448 0.5119 28 1 3.6144 -3.2168 -0.5169 29 1 5.1750 -2.3605 -0.5181 30 1 5.0735 -2.1723 1.9523 31 1 3.5130 -3.0285 1.9535 32 1 4.6616 -4.8991 0.9110 33 1 6.0407 -3.9357 3.3311 34 1 4.4799 -4.7913 3.3318 35 1 7.3773 -8.2213 4.7298 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308955105.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:50 Heat of formation + Delta-G solvation = 8.162081 kcal Electronic energy + Delta-G solvation = -15636.378572 eV Core-core repulsion = 13053.852867 eV Total energy + Delta-G solvation = -2582.525705 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.16169 -37.73340 -35.77571 -35.35644 -34.32628 -31.64050 -30.31366 -28.76879 -28.21727 -24.85852 -23.07586 -22.68042 -22.39448 -18.98463 -18.75873 -16.98117 -16.85238 -16.45739 -16.25646 -16.06871 -15.23431 -14.84426 -14.43609 -14.33011 -14.28412 -13.94596 -13.89859 -13.51181 -13.31426 -13.00569 -12.89708 -12.72320 -12.30186 -12.14750 -11.85485 -11.71981 -11.50299 -11.29192 -10.83751 -10.26409 -10.24917 -9.26353 -8.32047 -6.36825 -0.12992 0.09480 1.32555 1.34801 1.46275 2.32289 2.60783 2.79762 3.01483 3.08459 3.45958 3.58779 4.03314 4.05297 4.09711 4.21085 4.38834 4.43485 4.55677 4.68939 4.70716 4.71746 4.76886 4.81919 4.91848 4.97694 5.05024 5.08442 5.17428 5.48340 5.54184 5.88397 6.12051 6.49682 6.59436 6.72260 7.14147 7.27963 8.84633 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.035022 B = 0.004356 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.302478 B = 6425.759129 C = 6556.736185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.159 3.841 3 C -0.229 4.229 4 C 0.159 3.841 5 C -0.102 4.102 6 N -0.548 5.548 7 C 0.319 3.681 8 C -0.040 4.040 9 C 0.080 3.920 10 N -0.684 5.684 11 C 0.174 3.826 12 C -0.530 4.530 13 H 0.041 0.959 14 C 0.011 3.989 15 N -0.945 5.945 16 Si 0.950 3.050 17 H -0.265 1.265 18 H -0.277 1.277 19 H -0.255 1.255 20 N -0.549 5.549 21 H 0.099 0.901 22 H 0.073 0.927 23 H 0.108 0.892 24 H 0.186 0.814 25 H 0.099 0.901 26 H 0.108 0.892 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.021 0.979 32 H 0.341 0.659 33 H 0.023 0.977 34 H -0.014 1.014 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.171 23.780 -7.552 28.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.014 3.986 3 C -0.250 4.250 4 C 0.014 3.986 5 C -0.159 4.159 6 N -0.265 5.265 7 C 0.051 3.949 8 C -0.080 4.080 9 C -0.051 4.051 10 N -0.315 5.315 11 C 0.046 3.954 12 C -0.568 4.568 13 H 0.059 0.941 14 C -0.187 4.187 15 N -0.585 5.585 16 Si 0.773 3.227 17 H -0.190 1.190 18 H -0.202 1.202 19 H -0.179 1.179 20 N -0.265 5.265 21 H 0.117 0.883 22 H 0.092 0.908 23 H 0.127 0.873 24 H 0.203 0.797 25 H 0.117 0.883 26 H 0.127 0.873 27 H 0.092 0.908 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.159 0.841 33 H 0.041 0.959 34 H 0.003 0.997 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.007 23.095 -7.524 27.553 hybrid contribution -1.005 0.035 0.945 1.380 sum -14.012 23.129 -6.579 27.832 Atomic orbital electron populations 1.20891 0.85231 1.05003 1.04759 1.22494 0.99387 0.88002 0.88740 1.22967 0.95169 1.01600 1.05306 1.22497 0.92977 0.94414 0.88707 1.20896 0.99698 0.90581 1.04759 1.68147 1.42651 0.99238 1.16455 1.23057 0.86870 0.94465 0.90493 1.20239 1.00235 0.89946 0.97539 1.21672 0.95689 0.92285 0.95446 1.60362 1.50986 1.04646 1.15505 1.19764 0.94112 0.94414 0.87122 1.21307 1.37230 1.04509 0.93794 0.94054 1.25847 0.94400 0.95118 1.03363 1.70040 1.41695 1.17497 1.29250 0.85674 0.78651 0.79770 0.78574 1.18972 1.20191 1.17926 1.68136 1.09594 1.32207 1.16584 0.88282 0.90793 0.87330 0.79687 0.88289 0.87299 0.90812 0.88749 0.88656 0.92333 0.96129 0.84078 0.95879 0.99680 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.28 10.22 71.24 0.73 -0.55 16 2 C 0.16 3.37 6.82 42.57 0.29 3.66 16 3 C -0.23 -3.95 9.54 22.44 0.21 -3.74 16 4 C 0.16 3.42 6.82 42.57 0.29 3.71 16 5 C -0.10 -1.33 10.22 71.24 0.73 -0.60 16 6 N -0.55 -16.14 10.27 -176.02 -1.81 -17.95 16 7 C 0.32 9.89 6.90 138.75 0.96 10.84 16 8 C -0.04 -1.28 5.91 29.85 0.18 -1.10 16 9 C 0.08 2.95 5.67 86.30 0.49 3.44 16 10 N -0.68 -29.96 6.49 -517.93 -3.36 -33.33 16 11 C 0.17 8.86 4.51 85.55 0.39 9.24 16 12 C -0.53 -31.89 9.87 25.60 0.25 -31.63 16 13 H 0.04 2.73 8.06 -2.91 -0.02 2.70 16 14 C 0.01 0.63 5.47 84.66 0.46 1.10 16 15 N -0.94 -60.09 13.96 21.45 0.30 -59.79 16 16 Si 0.95 45.38 27.47 68.60 1.88 47.26 16 17 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 19 H -0.26 -11.62 6.54 99.48 0.65 -10.96 16 20 N -0.55 -15.86 10.27 -176.01 -1.81 -17.67 16 21 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.11 0.72 8.10 -2.38 -0.02 0.70 16 24 H 0.19 1.48 8.06 -2.91 -0.02 1.46 16 25 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.11 0.75 8.10 -2.39 -0.02 0.73 16 27 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 30 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.34 14.32 8.72 -89.69 -0.78 13.53 16 33 H 0.02 1.19 7.20 -2.39 -0.02 1.17 16 34 H -0.01 -0.71 7.57 -2.39 -0.02 -0.73 16 35 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -74.35 300.41 0.42 -73.93 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.24 Total: 13.18 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: 4.97 Total: -5.63 kcal Atomic # 7 Polarization: -122.07 SS G_CDS: -6.68 Total: -128.75 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.88 Total: 47.26 kcal Total: -74.35 0.42 -73.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308955105.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.092 kcal (2) G-P(sol) polarization free energy of solvation -74.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds