Wall clock time and date at job start Mon Mar 30 2020 03:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38064 * 119.57524 * 2 1 4 4 C 1.38842 * 119.32488 * 179.74998 * 3 2 1 5 5 C 1.50707 * 120.74262 * 180.22064 * 4 3 2 6 6 N 1.46901 * 109.47015 * 270.29954 * 5 4 3 7 7 C 1.46898 * 111.00167 * 293.95585 * 6 5 4 8 8 C 1.46900 * 110.99894 * 170.00384 * 6 5 4 9 9 C 1.50694 * 109.47294 * 190.00132 * 8 6 5 10 10 H 1.08001 * 119.99883 * 359.97438 * 9 8 6 11 11 C 1.37881 * 120.00151 * 179.97438 * 9 8 6 12 12 N 1.31511 * 119.99505 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99834 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47166 * 90.00711 * 13 11 9 15 15 H 1.48506 * 109.46916 * 210.00237 * 13 11 9 16 16 H 1.48493 * 109.47531 * 330.00096 * 13 11 9 17 17 C 1.38334 * 118.50691 * 0.51783 * 4 3 2 18 18 C 1.39095 * 119.09945 * 359.72751 * 17 4 3 19 19 N 1.39012 * 119.70549 * 180.02562 * 18 17 4 20 20 N 1.31945 * 119.56843 * 180.27404 * 2 1 3 21 21 H 1.08999 * 109.47015 * 269.72965 * 1 2 3 22 22 H 1.09000 * 109.46646 * 29.72118 * 1 2 3 23 23 H 1.09000 * 109.47248 * 149.72835 * 1 2 3 24 24 H 1.08003 * 120.33239 * 359.97438 * 3 2 1 25 25 H 1.09000 * 109.47211 * 30.29878 * 5 4 3 26 26 H 1.08999 * 109.46489 * 150.30461 * 5 4 3 27 27 H 1.09000 * 109.46839 * 59.99964 * 7 6 5 28 28 H 1.08995 * 109.47252 * 180.02562 * 7 6 5 29 29 H 1.09004 * 109.46778 * 300.00274 * 7 6 5 30 30 H 1.09004 * 109.46803 * 310.00286 * 8 6 5 31 31 H 1.08995 * 109.47404 * 69.99749 * 8 6 5 32 32 H 0.97008 * 119.99709 * 179.97438 * 12 11 9 33 33 H 1.08004 * 120.44920 * 179.70439 * 17 4 3 34 34 H 0.97001 * 119.99763 * 180.02562 * 19 18 17 35 35 H 0.96998 * 119.99704 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1885 1.2008 0.0000 4 6 3.5769 1.1947 0.0053 5 6 4.3529 2.4866 0.0104 6 7 4.6041 2.9124 -1.3729 7 6 5.4980 1.9705 -2.0596 8 6 5.1461 4.2772 -1.4134 9 6 5.1604 4.7699 -2.8374 10 1 4.8031 4.1328 -3.6329 11 6 5.6297 6.0342 -3.1248 12 7 6.0652 6.8097 -2.1561 13 14 5.6481 6.6446 -4.8901 14 1 4.3624 7.3232 -5.1927 15 1 6.7681 7.6030 -5.0708 16 1 5.8287 5.4932 -5.8102 17 6 4.2318 -0.0238 -0.0006 18 6 3.4816 -1.1950 -0.0058 19 7 4.1267 -2.4263 -0.0111 20 7 2.1582 -1.1476 -0.0055 21 1 -0.3633 -0.0048 1.0277 22 1 -0.3632 0.8925 -0.5095 23 1 -0.3634 -0.8875 -0.5180 24 1 1.6470 2.1352 -0.0004 25 1 3.7774 3.2541 0.5280 26 1 5.3033 2.3374 0.5229 27 1 5.0402 0.9814 -2.0760 28 1 5.6677 2.3098 -3.0814 29 1 6.4499 1.9216 -1.5306 30 1 4.5216 4.9341 -0.8078 31 1 6.1621 4.2766 -1.0189 32 1 6.3958 7.6991 -2.3583 33 1 5.3111 -0.0651 -0.0015 34 1 3.6077 -3.2458 -0.0151 35 1 5.0959 -2.4660 -0.0109 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000321408709.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:11 Heat of formation + Delta-G solvation = 33.345907 kcal Electronic energy + Delta-G solvation = -16167.413010 eV Core-core repulsion = 13585.979358 eV Total energy + Delta-G solvation = -2581.433652 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.12090 -36.75555 -34.90517 -33.17678 -31.98820 -30.43257 -27.43565 -27.28931 -26.49071 -24.01390 -22.20955 -21.14381 -19.96324 -17.24409 -16.62889 -16.18481 -15.60972 -15.08475 -14.93152 -14.46810 -14.04177 -13.83929 -13.54114 -13.09435 -12.68201 -12.28288 -11.97487 -11.93326 -11.64030 -11.34697 -11.02306 -10.86752 -10.68274 -10.48698 -10.34174 -9.90553 -9.35971 -9.21426 -9.09502 -8.43840 -7.64101 -7.27255 -6.03514 -4.04702 1.48895 1.74356 3.32366 3.38133 3.42018 3.58362 4.08340 4.43387 4.68214 4.93728 5.17649 5.32348 5.34444 5.45103 5.63227 5.65691 5.67634 5.74235 6.00540 6.05234 6.18668 6.23102 6.26525 6.33349 6.74214 6.81733 6.85947 7.25615 7.31297 7.37861 7.54216 7.78409 8.05551 8.17211 8.42398 8.52059 9.02827 9.59461 11.07419 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.035767 B = 0.005218 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.658499 B = 5365.117001 C = 5618.818541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.166 3.834 3 C -0.208 4.208 4 C 0.025 3.975 5 C 0.087 3.913 6 N -0.532 5.532 7 C 0.035 3.965 8 C 0.192 3.808 9 C -0.507 4.507 10 H 0.063 0.937 11 C 0.055 3.945 12 N -0.899 5.899 13 Si 0.899 3.101 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.239 4.239 18 C 0.400 3.600 19 N -0.858 5.858 20 N -0.553 5.553 21 H 0.074 0.926 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.132 0.868 25 H 0.081 0.919 26 H 0.035 0.965 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.010 0.990 30 H 0.031 0.969 31 H -0.008 1.008 32 H 0.261 0.739 33 H 0.124 0.876 34 H 0.399 0.601 35 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.329 -14.449 5.529 16.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.029 3.971 3 C -0.230 4.230 4 C 0.017 3.983 5 C -0.041 4.041 6 N -0.256 5.256 7 C -0.114 4.114 8 C 0.068 3.932 9 C -0.545 4.545 10 H 0.082 0.918 11 C -0.146 4.146 12 N -0.539 5.539 13 Si 0.726 3.274 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.264 4.264 18 C 0.164 3.836 19 N -0.403 5.403 20 N -0.273 5.273 21 H 0.093 0.907 22 H 0.095 0.905 23 H 0.091 0.909 24 H 0.150 0.850 25 H 0.100 0.900 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.029 0.971 30 H 0.049 0.951 31 H 0.010 0.990 32 H 0.071 0.929 33 H 0.142 0.858 34 H 0.228 0.772 35 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -6.167 -14.962 5.304 17.030 hybrid contribution 1.646 0.871 -0.502 1.928 sum -4.521 -14.091 4.803 15.559 Atomic orbital electron populations 1.20683 0.89214 1.03248 1.02663 1.20815 0.96130 0.87472 0.92727 1.21547 0.94130 0.98841 1.08529 1.20091 0.93743 0.94562 0.89912 1.21088 0.97455 0.92872 0.92724 1.62135 1.47686 1.04736 1.11068 1.22290 0.93289 0.95444 1.00354 1.19771 0.93118 0.82355 0.98000 1.21151 1.41116 0.99499 0.92765 0.91836 1.24983 0.95431 0.96712 0.97462 1.69961 1.42998 1.09234 1.31688 0.86487 0.77589 0.78602 0.84672 1.20580 1.21325 1.19877 1.21183 1.00247 0.91552 1.13409 1.18192 0.88417 0.86186 0.90850 1.42111 1.08899 1.04656 1.84592 1.66883 1.07539 1.30369 1.22488 0.90744 0.90527 0.90945 0.85034 0.90018 0.94720 0.93333 0.90715 0.97148 0.95075 0.99032 0.92916 0.85800 0.77216 0.76548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 10.17 36.01 0.37 -0.74 16 2 C 0.17 2.43 6.78 -82.60 -0.56 1.87 16 3 C -0.21 -3.26 9.44 -39.42 -0.37 -3.63 16 4 C 0.03 0.42 4.90 -104.36 -0.51 -0.09 16 5 C 0.09 1.59 5.16 -4.97 -0.03 1.57 16 6 N -0.53 -11.66 4.74 -245.83 -1.17 -12.82 16 7 C 0.03 0.70 8.99 60.06 0.54 1.24 16 8 C 0.19 5.02 4.72 -4.98 -0.02 4.99 16 9 C -0.51 -14.28 8.46 -34.44 -0.29 -14.58 16 10 H 0.06 1.78 7.12 -52.49 -0.37 1.41 16 11 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 12 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 13 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 17 C -0.24 -3.59 7.94 -39.23 -0.31 -3.91 16 18 C 0.40 5.74 7.75 -155.00 -1.20 4.54 16 19 N -0.86 -8.88 9.07 31.13 0.28 -8.60 16 20 N -0.55 -8.46 10.31 -8.66 -0.09 -8.55 16 21 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.08 0.75 8.07 -51.93 -0.42 0.34 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.13 1.94 8.06 -52.48 -0.42 1.52 16 25 H 0.08 1.47 7.89 -51.93 -0.41 1.06 16 26 H 0.03 0.62 8.08 -51.93 -0.42 0.20 16 27 H 0.05 0.88 6.18 -51.93 -0.32 0.56 16 28 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 29 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.03 0.86 7.93 -51.93 -0.41 0.44 16 31 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.12 1.70 8.06 -52.48 -0.42 1.28 16 34 H 0.40 3.58 8.95 -40.82 -0.37 3.22 16 35 H 0.41 3.23 8.82 -40.82 -0.36 2.87 16 LS Contribution 294.82 15.07 4.44 4.44 Total: -1.00 -31.59 294.82 -8.40 -39.99 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -5.10 Total: 2.06 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -2.49 Total: -7.26 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.24 Total: -55.90 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.59 -8.40 -39.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000321408709.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.339 kcal (2) G-P(sol) polarization free energy of solvation -31.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds