Wall clock time and date at job start Mon Mar 30 2020 03:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38064 * 119.57524 * 2 1 4 4 C 1.38842 * 119.32488 * 179.74998 * 3 2 1 5 5 C 1.50707 * 120.74262 * 180.22064 * 4 3 2 6 6 N 1.46901 * 109.47015 * 270.29954 * 5 4 3 7 7 C 1.46898 * 111.00167 * 293.95585 * 6 5 4 8 8 C 1.46900 * 110.99894 * 170.00384 * 6 5 4 9 9 C 1.50694 * 109.47294 * 190.00132 * 8 6 5 10 10 H 1.08001 * 119.99883 * 359.97438 * 9 8 6 11 11 C 1.37881 * 120.00151 * 179.97438 * 9 8 6 12 12 N 1.31511 * 119.99505 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99834 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47166 * 90.00711 * 13 11 9 15 15 H 1.48506 * 109.46916 * 210.00237 * 13 11 9 16 16 H 1.48493 * 109.47531 * 330.00096 * 13 11 9 17 17 C 1.38334 * 118.50691 * 0.51783 * 4 3 2 18 18 C 1.39095 * 119.09945 * 359.72751 * 17 4 3 19 19 N 1.39012 * 119.70549 * 180.02562 * 18 17 4 20 20 N 1.31945 * 119.56843 * 180.27404 * 2 1 3 21 21 H 1.08999 * 109.47015 * 269.72965 * 1 2 3 22 22 H 1.09000 * 109.46646 * 29.72118 * 1 2 3 23 23 H 1.09000 * 109.47248 * 149.72835 * 1 2 3 24 24 H 1.08003 * 120.33239 * 359.97438 * 3 2 1 25 25 H 1.09000 * 109.47211 * 30.29878 * 5 4 3 26 26 H 1.08999 * 109.46489 * 150.30461 * 5 4 3 27 27 H 1.09000 * 109.46839 * 59.99964 * 7 6 5 28 28 H 1.08995 * 109.47252 * 180.02562 * 7 6 5 29 29 H 1.09004 * 109.46778 * 300.00274 * 7 6 5 30 30 H 1.09004 * 109.46803 * 310.00286 * 8 6 5 31 31 H 1.08995 * 109.47404 * 69.99749 * 8 6 5 32 32 H 0.97008 * 119.99709 * 179.97438 * 12 11 9 33 33 H 1.08004 * 120.44920 * 179.70439 * 17 4 3 34 34 H 0.97001 * 119.99763 * 180.02562 * 19 18 17 35 35 H 0.96998 * 119.99704 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1885 1.2008 0.0000 4 6 3.5769 1.1947 0.0053 5 6 4.3529 2.4866 0.0104 6 7 4.6041 2.9124 -1.3729 7 6 5.4980 1.9705 -2.0596 8 6 5.1461 4.2772 -1.4134 9 6 5.1604 4.7699 -2.8374 10 1 4.8031 4.1328 -3.6329 11 6 5.6297 6.0342 -3.1248 12 7 6.0652 6.8097 -2.1561 13 14 5.6481 6.6446 -4.8901 14 1 4.3624 7.3232 -5.1927 15 1 6.7681 7.6030 -5.0708 16 1 5.8287 5.4932 -5.8102 17 6 4.2318 -0.0238 -0.0006 18 6 3.4816 -1.1950 -0.0058 19 7 4.1267 -2.4263 -0.0111 20 7 2.1582 -1.1476 -0.0055 21 1 -0.3633 -0.0048 1.0277 22 1 -0.3632 0.8925 -0.5095 23 1 -0.3634 -0.8875 -0.5180 24 1 1.6470 2.1352 -0.0004 25 1 3.7774 3.2541 0.5280 26 1 5.3033 2.3374 0.5229 27 1 5.0402 0.9814 -2.0760 28 1 5.6677 2.3098 -3.0814 29 1 6.4499 1.9216 -1.5306 30 1 4.5216 4.9341 -0.8078 31 1 6.1621 4.2766 -1.0189 32 1 6.3958 7.6991 -2.3583 33 1 5.3111 -0.0651 -0.0015 34 1 3.6077 -3.2458 -0.0151 35 1 5.0959 -2.4660 -0.0109 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000321408709.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:11 Heat of formation + Delta-G solvation = 11.315325 kcal Electronic energy + Delta-G solvation = -16168.368327 eV Core-core repulsion = 13585.979358 eV Total energy + Delta-G solvation = -2582.388970 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.27050 -38.40821 -35.92471 -34.98757 -33.63216 -31.42554 -29.35421 -28.65267 -27.76166 -25.84720 -23.35610 -22.76353 -21.42492 -18.59174 -18.22090 -17.51816 -16.86027 -16.72114 -16.28585 -16.00848 -15.49971 -15.29094 -15.09903 -14.35169 -13.92641 -13.59676 -13.50614 -13.27152 -13.01016 -13.00479 -12.74764 -12.58879 -12.39441 -12.27817 -11.88817 -11.44103 -11.29425 -10.62354 -10.40033 -10.37953 -9.05953 -8.67474 -8.20562 -6.30485 0.32926 0.55825 1.42015 1.43396 1.54397 2.40804 2.64459 2.91078 3.12310 3.45167 3.67582 3.74793 4.20983 4.28442 4.35366 4.49571 4.56860 4.66388 4.68182 4.77198 4.86816 4.89850 5.04303 5.13113 5.17232 5.24246 5.28462 5.60388 5.64422 5.77192 6.02974 6.28560 6.43655 6.57222 6.64317 6.84779 7.39065 7.39984 8.90522 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.035767 B = 0.005218 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.658499 B = 5365.117001 C = 5618.818541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.164 3.836 3 C -0.225 4.225 4 C 0.012 3.988 5 C 0.091 3.909 6 N -0.541 5.541 7 C 0.042 3.958 8 C 0.207 3.793 9 C -0.524 4.524 10 H 0.061 0.939 11 C 0.004 3.996 12 N -0.934 5.934 13 Si 0.969 3.031 14 H -0.273 1.273 15 H -0.281 1.281 16 H -0.266 1.266 17 C -0.246 4.246 18 C 0.397 3.603 19 N -0.841 5.841 20 N -0.566 5.566 21 H 0.091 0.909 22 H 0.086 0.914 23 H 0.077 0.923 24 H 0.133 0.867 25 H 0.077 0.923 26 H 0.039 0.961 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.015 0.985 30 H 0.008 0.992 31 H -0.034 1.034 32 H 0.265 0.735 33 H 0.135 0.865 34 H 0.408 0.592 35 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.871 -15.843 4.842 17.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.026 3.974 3 C -0.248 4.248 4 C 0.003 3.997 5 C -0.037 4.037 6 N -0.265 5.265 7 C -0.106 4.106 8 C 0.081 3.919 9 C -0.563 4.563 10 H 0.079 0.921 11 C -0.194 4.194 12 N -0.574 5.574 13 Si 0.794 3.206 14 H -0.198 1.198 15 H -0.207 1.207 16 H -0.190 1.190 17 C -0.271 4.271 18 C 0.159 3.841 19 N -0.386 5.386 20 N -0.287 5.287 21 H 0.110 0.890 22 H 0.105 0.895 23 H 0.096 0.904 24 H 0.151 0.849 25 H 0.096 0.904 26 H 0.057 0.943 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.034 0.966 30 H 0.026 0.974 31 H -0.016 1.016 32 H 0.074 0.926 33 H 0.153 0.847 34 H 0.239 0.761 35 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -6.696 -16.407 4.624 18.314 hybrid contribution 1.803 1.206 -0.216 2.180 sum -4.893 -15.201 4.408 16.566 Atomic orbital electron populations 1.20765 0.86760 1.04028 1.03978 1.21323 0.97812 0.86895 0.91321 1.21660 0.93978 0.99571 1.09635 1.19944 0.94117 0.93995 0.91596 1.21045 0.97964 0.94021 0.90641 1.62019 1.47592 1.03257 1.13607 1.22223 0.93512 0.95803 0.99074 1.19426 0.91262 0.84554 0.96642 1.21440 1.41292 0.99953 0.93574 0.92075 1.25882 0.94772 0.96810 1.01980 1.70080 1.43641 1.09677 1.34000 0.85387 0.77864 0.78174 0.79216 1.19827 1.20674 1.18994 1.21266 1.00879 0.91322 1.13675 1.18413 0.88377 0.87214 0.90070 1.42087 1.09718 1.03749 1.83036 1.67018 1.07951 1.30546 1.23139 0.89046 0.89507 0.90371 0.84892 0.90414 0.94268 0.91111 0.92509 0.96604 0.97377 1.01604 0.92628 0.84676 0.76141 0.75064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.95 10.17 71.24 0.72 -1.23 16 2 C 0.16 4.56 6.78 42.50 0.29 4.84 16 3 C -0.23 -6.91 9.44 22.37 0.21 -6.70 16 4 C 0.01 0.38 4.90 -19.69 -0.10 0.28 16 5 C 0.09 3.36 5.16 85.56 0.44 3.81 16 6 N -0.54 -23.95 4.74 -931.65 -4.42 -28.37 16 7 C 0.04 1.68 8.99 127.69 1.15 2.83 16 8 C 0.21 11.13 4.72 85.56 0.40 11.54 16 9 C -0.52 -29.97 8.46 25.60 0.22 -29.75 16 10 H 0.06 3.45 7.12 -2.91 -0.02 3.43 16 11 C 0.00 0.21 5.46 84.66 0.46 0.67 16 12 N -0.93 -56.12 13.29 21.45 0.28 -55.83 16 13 Si 0.97 44.38 29.54 68.60 2.03 46.40 16 14 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 17 C -0.25 -7.04 7.94 22.50 0.18 -6.86 16 18 C 0.40 10.60 7.75 133.04 1.03 11.63 16 19 N -0.84 -15.23 9.07 -55.44 -0.50 -15.73 16 20 N -0.57 -16.23 10.31 -181.33 -1.87 -18.10 16 21 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 22 H 0.09 1.54 8.07 -2.39 -0.02 1.52 16 23 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 25 H 0.08 2.88 7.89 -2.39 -0.02 2.86 16 26 H 0.04 1.40 8.08 -2.39 -0.02 1.38 16 27 H 0.07 2.49 6.18 -2.39 -0.01 2.47 16 28 H 0.06 2.44 6.76 -2.39 -0.02 2.43 16 29 H 0.02 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.01 0.47 7.93 -2.38 -0.02 0.45 16 31 H -0.03 -1.95 8.12 -2.39 -0.02 -1.97 16 32 H 0.26 14.94 8.31 -92.70 -0.77 14.17 16 33 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 34 H 0.41 6.23 8.95 -92.71 -0.83 5.40 16 35 H 0.42 5.51 8.82 -92.71 -0.82 4.69 16 Total: -1.00 -67.12 294.82 -0.02 -67.15 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -0.55 Total: 13.44 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 5.01 Total: -8.95 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -6.51 Total: -118.04 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -67.12 -0.02 -67.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000321408709.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.460 kcal (2) G-P(sol) polarization free energy of solvation -67.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds