Wall clock time and date at job start Mon Mar 30 2020 03:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86795 * 120.00218 * 2 1 4 4 H 1.48500 * 109.47635 * 274.97816 * 3 2 1 5 5 H 1.48500 * 109.46851 * 34.97645 * 3 2 1 6 6 H 1.48501 * 109.47283 * 154.97386 * 3 2 1 7 7 C 1.40269 * 119.99721 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99952 * 186.09882 * 7 2 1 9 9 C 1.40367 * 120.00200 * 6.09550 * 7 2 1 10 10 N 1.33064 * 126.31817 * 172.71961 * 9 7 2 11 11 C 1.32236 * 109.80382 * 180.02562 * 10 9 7 12 12 C 1.50695 * 125.15888 * 179.72881 * 11 10 9 13 13 C 1.53002 * 109.46808 * 90.00663 * 12 11 10 14 14 C 1.53008 * 109.46850 * 294.99811 * 13 12 11 15 15 C 1.52996 * 109.46869 * 180.02562 * 14 13 12 16 16 C 1.52995 * 109.47458 * 60.00017 * 15 14 13 17 17 C 1.53004 * 109.47116 * 299.99509 * 16 15 14 18 18 C 1.53002 * 109.46538 * 60.00441 * 17 16 15 19 19 N 1.31403 * 109.67941 * 0.02562 * 11 10 9 20 20 N 1.37028 * 126.31924 * 352.74178 * 9 7 2 21 21 H 0.97006 * 127.00978 * 0.02562 * 20 9 7 22 22 H 0.97000 * 120.00235 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47201 * 210.00327 * 12 11 10 24 24 H 1.08998 * 109.47370 * 330.00460 * 12 11 10 25 25 H 1.08993 * 109.47256 * 54.99432 * 13 12 11 26 26 H 1.09006 * 109.46555 * 299.99793 * 14 13 12 27 27 H 1.08993 * 109.47348 * 59.99724 * 14 13 12 28 28 H 1.09003 * 109.47290 * 299.99724 * 15 14 13 29 29 H 1.09007 * 109.46810 * 179.97438 * 15 14 13 30 30 H 1.09006 * 109.47425 * 179.97438 * 16 15 14 31 31 H 1.08993 * 109.47621 * 59.99839 * 16 15 14 32 32 H 1.08997 * 109.47544 * 300.00342 * 17 16 15 33 33 H 1.09001 * 109.47340 * 179.97438 * 17 16 15 34 34 H 1.09007 * 109.46792 * 180.02562 * 18 17 16 35 35 H 1.08997 * 109.47284 * 59.99741 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.3828 2.1072 -1.3947 5 1 1.4944 2.6199 0.8026 6 1 3.5866 1.4120 0.5923 7 6 2.0077 -1.2148 -0.0005 8 1 3.0831 -1.2175 0.0988 9 6 1.3118 -2.4269 -0.1302 10 7 1.8520 -3.6335 -0.2818 11 6 0.8971 -4.5438 -0.3718 12 6 1.1223 -6.0224 -0.5557 13 6 1.2287 -6.6962 0.8139 14 6 2.4751 -6.1840 1.5387 15 6 2.5819 -6.8582 2.9080 16 6 2.6857 -8.3734 2.7237 17 6 1.4394 -8.8857 1.9989 18 6 1.3327 -8.2115 0.6296 19 7 -0.2781 -3.9626 -0.2829 20 7 -0.0492 -2.5860 -0.1243 21 1 -0.7181 -1.8897 -0.0310 22 1 -0.4850 0.8400 -0.0004 23 1 0.2860 -6.4514 -1.1076 24 1 2.0456 -6.1829 -1.1123 25 1 0.3430 -6.4615 1.4041 26 1 3.3608 -6.4187 0.9484 27 1 2.4013 -5.1044 1.6696 28 1 1.6961 -6.6239 3.4985 29 1 3.4700 -6.4936 3.4242 30 1 2.7623 -8.8538 3.6992 31 1 3.5714 -8.6078 2.1333 32 1 0.5537 -8.6514 2.5893 33 1 1.5136 -9.9652 1.8672 34 1 0.4445 -8.5761 0.1134 35 1 2.2184 -8.4458 0.0392 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379164049.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:40 Heat of formation + Delta-G solvation = 24.674981 kcal Electronic energy + Delta-G solvation = -16510.525042 eV Core-core repulsion = 13928.715391 eV Total energy + Delta-G solvation = -2581.809652 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.83623 -38.21415 -34.10033 -32.71283 -30.48127 -30.01546 -29.49614 -26.54594 -25.36114 -22.30881 -21.39010 -20.54323 -19.32991 -18.35505 -17.64351 -15.40631 -15.20231 -15.01049 -14.04531 -14.03692 -13.66397 -13.42187 -13.31891 -12.78384 -11.92222 -11.88790 -11.76292 -11.56382 -11.33042 -11.27927 -11.09100 -10.80616 -10.58977 -10.43933 -10.09122 -9.88508 -9.76727 -9.60210 -9.55879 -8.14796 -8.13035 -7.90376 -7.12627 -4.85298 2.84165 2.98442 3.05093 3.51117 3.77731 4.22047 4.76433 4.96265 5.04101 5.05896 5.32234 5.45694 5.51787 5.71828 5.77334 5.82629 5.85782 5.89563 5.94954 6.16571 6.22860 6.26960 6.36261 6.42350 6.52365 6.55492 6.63385 6.90357 6.97569 6.99356 7.08382 7.64870 8.09333 8.26215 8.52907 8.58750 9.42649 9.93823 10.19043 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.043756 B = 0.005620 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.756707 B = 4981.099781 C = 5337.754686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.073 3.927 3 Si 0.943 3.057 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.429 4.429 8 H 0.102 0.898 9 C 0.410 3.590 10 N -0.625 5.625 11 C 0.215 3.785 12 C -0.011 4.011 13 C -0.075 4.075 14 C -0.110 4.110 15 C -0.119 4.119 16 C -0.118 4.118 17 C -0.117 4.117 18 C -0.113 4.113 19 N -0.410 5.410 20 N -0.509 5.509 21 H 0.438 0.562 22 H 0.292 0.708 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.706 -8.518 3.099 9.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.144 4.144 3 Si 0.767 3.233 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.181 1.181 7 C -0.470 4.470 8 H 0.120 0.880 9 C 0.155 3.845 10 N -0.363 5.363 11 C -0.068 4.068 12 C -0.051 4.051 13 C -0.095 4.095 14 C -0.148 4.148 15 C -0.157 4.157 16 C -0.155 4.155 17 C -0.155 4.155 18 C -0.150 4.150 19 N -0.246 5.246 20 N -0.234 5.234 21 H 0.292 0.708 22 H 0.103 0.897 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.183 -8.874 3.047 9.633 hybrid contribution -0.188 1.491 0.047 1.504 sum 1.995 -7.383 3.094 8.250 Atomic orbital electron populations 1.68799 1.08025 1.30591 1.39441 1.26041 0.94880 1.02350 0.91132 0.85712 0.80038 0.78420 0.79158 1.19261 1.20093 1.18137 1.18662 0.95808 0.86597 1.45974 0.88002 1.20815 0.81179 0.92899 0.89579 1.70720 1.32190 0.97936 1.35496 1.23375 0.87884 0.96147 0.99435 1.19709 1.01598 0.87002 0.96825 1.21046 0.98905 0.93483 0.96043 1.21551 0.97252 1.01379 0.94604 1.21554 1.01214 0.94778 0.98160 1.21534 0.98084 0.96299 0.99598 1.21513 0.98257 0.98967 0.96755 1.21590 1.01521 0.95256 0.96674 1.77586 1.22767 0.89951 1.34323 1.48650 1.08099 1.04936 1.61743 0.70842 0.89686 0.91389 0.90754 0.91485 0.92262 0.90418 0.92544 0.92496 0.92805 0.92211 0.92260 0.92580 0.92256 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.46 10.77 55.56 0.60 -19.87 16 2 C 0.07 1.76 5.49 -17.29 -0.09 1.67 16 3 Si 0.94 18.09 29.57 -169.99 -5.03 13.07 16 4 H -0.27 -5.09 7.11 56.52 0.40 -4.68 16 5 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 6 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 7 C -0.43 -11.41 9.47 -38.02 -0.36 -11.77 16 8 H 0.10 2.61 7.86 -52.49 -0.41 2.20 16 9 C 0.41 11.55 7.66 -155.87 -1.19 10.35 16 10 N -0.63 -16.96 10.50 -10.11 -0.11 -17.06 16 11 C 0.22 5.36 6.56 -157.15 -1.03 4.33 16 12 C -0.01 -0.22 5.32 -27.88 -0.15 -0.36 16 13 C -0.08 -1.26 2.18 -90.61 -0.20 -1.45 16 14 C -0.11 -1.89 5.01 -26.73 -0.13 -2.03 16 15 C -0.12 -1.71 5.92 -26.74 -0.16 -1.87 16 16 C -0.12 -1.41 5.92 -26.73 -0.16 -1.57 16 17 C -0.12 -1.39 5.92 -26.73 -0.16 -1.55 16 18 C -0.11 -1.48 5.20 -26.73 -0.14 -1.62 16 19 N -0.41 -10.98 12.80 32.36 0.41 -10.56 16 20 N -0.51 -14.08 7.16 31.10 0.22 -13.86 16 21 H 0.44 11.83 6.43 -182.33 -1.17 10.65 16 22 H 0.29 6.41 8.29 -40.82 -0.34 6.08 16 23 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 25 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.08 1.64 6.81 -51.93 -0.35 1.29 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 283.86 15.07 4.28 4.28 Total: -1.00 -28.65 283.86 -9.54 -38.19 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -6.14 Total: 11.69 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -3.77 Total: -5.87 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: 1.13 Total: -61.35 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.65 -9.54 -38.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379164049.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.866 kcal (2) G-P(sol) polarization free energy of solvation -28.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds