Wall clock time and date at job start Mon Mar 30 2020 03:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30840 * 125.89428 * 2 1 4 4 N 1.40093 * 108.19898 * 180.25844 * 3 2 1 5 5 C 1.46502 * 126.03249 * 179.69675 * 4 3 2 6 6 C 1.50697 * 109.47067 * 305.02150 * 5 4 3 7 7 H 1.08001 * 120.00448 * 0.02562 * 6 5 4 8 8 C 1.37886 * 119.99973 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99750 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99982 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47136 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46924 * 120.00020 * 10 8 6 13 13 H 1.48494 * 109.47020 * 240.00177 * 10 8 6 14 14 C 1.34942 * 107.92397 * 359.71493 * 4 3 2 15 15 C 1.35315 * 107.75025 * 0.02562 * 14 4 3 16 16 C 1.50697 * 126.03769 * 180.02562 * 15 14 4 17 17 N 1.46901 * 109.46943 * 260.02089 * 16 15 14 18 18 C 1.46905 * 110.99870 * 180.02562 * 17 16 15 19 19 C 1.53001 * 117.50003 * 223.74802 * 18 17 16 20 20 C 1.52997 * 117.49675 * 155.08687 * 18 17 16 21 21 H 1.09001 * 109.47046 * 270.21324 * 1 2 3 22 22 H 1.09001 * 109.47213 * 30.21533 * 1 2 3 23 23 H 1.08997 * 109.46966 * 150.21778 * 1 2 3 24 24 H 1.08998 * 109.47351 * 65.02292 * 5 4 3 25 25 H 1.09005 * 109.46938 * 185.02330 * 5 4 3 26 26 H 0.96996 * 119.99908 * 180.02562 * 9 8 6 27 27 H 1.08004 * 126.12229 * 180.02562 * 14 4 3 28 28 H 1.09004 * 109.46763 * 140.02530 * 16 15 14 29 29 H 1.08995 * 109.47483 * 20.02187 * 16 15 14 30 30 H 1.00901 * 111.00067 * 303.95401 * 17 16 15 31 31 H 1.08999 * 115.54683 * 9.42062 * 18 17 16 32 32 H 1.09005 * 117.49640 * 359.97438 * 19 18 17 33 33 H 1.08994 * 117.50079 * 145.01968 * 19 18 17 34 34 H 1.09006 * 117.49877 * 214.97516 * 20 18 17 35 35 H 1.08996 * 117.50022 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 -0.0060 5 6 4.7898 1.5009 -0.0143 6 6 4.7063 2.4526 -1.1797 7 1 3.8580 2.4159 -1.8472 8 6 5.7128 3.3704 -1.3938 9 7 6.7460 3.4147 -0.5813 10 14 5.6096 4.5497 -2.8389 11 1 4.3571 4.2968 -3.5956 12 1 5.6110 5.9476 -2.3379 13 1 6.7782 4.3424 -3.7313 14 6 3.6142 -0.7153 -0.0032 15 6 2.3271 -1.1330 0.0037 16 6 1.8600 -2.5657 0.0095 17 7 1.4738 -2.9602 -1.3518 18 6 1.0114 -4.3542 -1.3847 19 6 1.5092 -5.2369 -2.5310 20 6 0.0563 -4.7553 -2.5107 21 1 -0.3633 0.0038 1.0277 22 1 -0.3634 0.8881 -0.5172 23 1 -0.3633 -0.8919 -0.5104 24 1 4.8310 2.0679 0.9157 25 1 5.6880 0.8902 -0.1075 26 1 7.4539 4.0606 -0.7317 27 1 4.4891 -1.3485 -0.0060 28 1 1.0016 -2.6653 0.6739 29 1 2.6669 -3.2096 0.3593 30 1 0.7718 -2.3379 -1.7233 31 1 0.8688 -4.8253 -0.4121 32 1 2.1796 -4.7831 -3.2610 33 1 1.6939 -6.2887 -2.3127 34 1 -0.7143 -5.4907 -2.2791 35 1 -0.2292 -3.9848 -3.2268 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379981163.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:59 Heat of formation + Delta-G solvation = 91.847780 kcal Electronic energy + Delta-G solvation = -15940.796381 eV Core-core repulsion = 13361.899561 eV Total energy + Delta-G solvation = -2578.896820 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.45239 -37.74566 -34.35191 -33.24805 -32.05947 -29.63385 -28.68748 -26.33540 -24.25126 -22.45370 -22.23389 -21.10919 -19.99644 -18.74072 -16.54182 -16.05193 -15.89653 -15.18268 -14.57825 -14.31673 -14.05382 -13.49064 -12.94035 -12.82431 -12.57878 -12.46380 -11.99225 -11.94866 -11.55464 -11.45009 -11.41392 -10.93400 -10.84171 -10.65568 -10.39433 -10.22918 -9.76507 -9.49677 -8.64394 -8.35943 -8.19474 -7.54991 -6.23695 -4.28220 2.79708 3.23660 3.28569 3.31010 3.37797 3.63289 3.78900 4.31283 4.33437 4.87399 4.93953 5.10979 5.17471 5.25439 5.38642 5.53311 5.56353 5.63919 5.73166 5.82842 5.89856 5.91956 5.98450 6.13367 6.18090 6.38872 6.73151 6.97274 7.07592 7.19270 7.45485 7.49111 7.72110 7.89233 8.05864 8.65708 8.82227 9.37504 10.85473 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.030660 B = 0.005050 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.023604 B = 5542.956018 C = 5750.799919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.044 3.956 3 N -0.281 5.281 4 N -0.326 5.326 5 C 0.256 3.744 6 C -0.526 4.526 7 H 0.069 0.931 8 C 0.062 3.938 9 N -0.896 5.896 10 Si 0.908 3.092 11 H -0.271 1.271 12 H -0.281 1.281 13 H -0.282 1.282 14 C 0.068 3.932 15 C -0.266 4.266 16 C 0.152 3.848 17 N -0.655 5.655 18 C 0.019 3.981 19 C -0.172 4.172 20 C -0.198 4.198 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.266 0.734 27 H 0.163 0.837 28 H 0.031 0.969 29 H 0.071 0.929 30 H 0.343 0.657 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.479 -13.928 0.114 17.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 N -0.105 5.105 4 N -0.105 5.105 5 C 0.138 3.862 6 C -0.565 4.565 7 H 0.087 0.913 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.735 3.265 11 H -0.195 1.195 12 H -0.207 1.207 13 H -0.207 1.207 14 C -0.083 4.083 15 C -0.279 4.279 16 C 0.023 3.977 17 N -0.287 5.287 18 C -0.092 4.092 19 C -0.211 4.211 20 C -0.236 4.236 21 H 0.085 0.915 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.180 0.820 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.163 0.837 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.465 -12.561 -0.022 15.727 hybrid contribution -0.566 -0.140 -0.376 0.694 sum -10.031 -12.701 -0.398 16.189 Atomic orbital electron populations 1.19996 0.88181 1.02083 1.01880 1.22018 0.96146 0.90918 1.03015 1.77333 0.87527 1.22441 1.23191 1.49337 1.06092 1.04453 1.50625 1.19726 0.77915 0.89223 0.99290 1.21287 1.06970 1.17106 1.11117 0.91257 1.24948 0.94813 0.97253 0.97076 1.69929 1.09651 1.36484 1.37377 0.86268 0.78209 0.80316 0.81712 1.19518 1.20681 1.20746 1.22254 0.98451 0.86061 1.01522 1.19481 0.92180 0.94550 1.21645 1.19978 0.98388 0.91667 0.87667 1.60319 1.44627 1.00622 1.23123 1.22391 1.01948 0.91318 0.93567 1.23125 0.96437 0.99074 1.02429 1.23241 0.93539 1.04153 1.02656 0.91513 0.91328 0.91941 0.93790 0.92799 0.92395 0.82003 0.95128 0.91049 0.83727 0.88547 0.88333 0.89187 0.89065 0.88667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.88 10.26 36.01 0.37 -0.51 16 2 C 0.04 0.84 7.22 -82.41 -0.59 0.24 16 3 N -0.28 -6.53 12.41 33.67 0.42 -6.11 16 4 N -0.33 -7.63 3.67 -62.55 -0.23 -7.86 16 5 C 0.26 6.62 6.26 -5.19 -0.03 6.59 16 6 C -0.53 -14.92 9.24 -34.44 -0.32 -15.24 16 7 H 0.07 2.05 7.81 -52.49 -0.41 1.64 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 9 N -0.90 -25.67 13.29 55.43 0.74 -24.93 16 10 Si 0.91 21.68 29.54 -169.99 -5.02 16.65 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.07 1.34 11.36 -17.23 -0.20 1.14 16 15 C -0.27 -4.68 5.61 -105.06 -0.59 -5.27 16 16 C 0.15 2.09 5.65 -4.98 -0.03 2.06 16 17 N -0.66 -8.65 6.74 -107.99 -0.73 -9.38 16 18 C 0.02 0.20 6.25 -67.71 -0.42 -0.22 16 19 C -0.17 -1.75 10.46 -26.69 -0.28 -2.03 16 20 C -0.20 -1.85 10.34 -26.69 -0.28 -2.12 16 21 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.06 0.73 7.22 -51.93 -0.37 0.35 16 24 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.05 1.37 8.07 -51.93 -0.42 0.95 16 26 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.16 2.71 8.06 -52.48 -0.42 2.29 16 28 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.34 4.49 7.93 -39.29 -0.31 4.18 16 31 H 0.10 0.95 7.90 -51.93 -0.41 0.54 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 303.63 15.07 4.58 4.58 Total: -1.00 -30.42 303.63 -8.00 -38.42 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -5.29 Total: 2.35 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -2.47 Total: -13.73 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: 0.20 Total: -48.28 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.42 -8.00 -38.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379981163.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.272 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds