Wall clock time and date at job start Mon Mar 30 2020 02:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47075 * 2 1 4 4 C 1.50700 * 109.47433 * 240.00203 * 2 1 3 5 5 H 1.08001 * 119.99986 * 239.99683 * 4 2 1 6 6 C 1.37878 * 119.99946 * 59.99490 * 4 2 1 7 7 N 1.31517 * 120.00140 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99922 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47066 * 59.99908 * 8 6 4 10 10 H 1.48504 * 109.47080 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47258 * 299.99966 * 8 6 4 12 12 N 1.46502 * 109.47443 * 119.99450 * 2 1 3 13 13 C 1.39669 * 120.00681 * 275.00602 * 12 2 1 14 14 C 1.38905 * 120.07711 * 179.97438 * 13 12 2 15 15 C 1.38102 * 119.92398 * 179.72013 * 14 13 12 16 16 C 1.38284 * 120.07730 * 0.28542 * 15 14 13 17 17 C 1.50702 * 119.92910 * 179.97438 * 16 15 14 18 18 C 1.53000 * 109.47396 * 89.99398 * 17 16 15 19 19 O 1.42900 * 109.47114 * 180.02562 * 18 17 16 20 20 C 1.38288 * 120.14784 * 0.02562 * 16 15 14 21 21 C 1.38104 * 120.07459 * 0.02562 * 20 16 15 22 22 H 1.09001 * 109.46529 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47293 * 299.99876 * 1 2 3 24 24 H 1.08995 * 109.47245 * 60.00404 * 1 2 3 25 25 H 0.96996 * 119.99891 * 180.02562 * 7 6 4 26 26 H 0.97008 * 119.99236 * 95.00114 * 12 2 1 27 27 H 1.08002 * 120.04044 * 0.02562 * 14 13 12 28 28 H 1.08000 * 119.96256 * 180.29943 * 15 14 13 29 29 H 1.08998 * 109.46900 * 209.99776 * 17 16 15 30 30 H 1.09005 * 109.46585 * 329.99345 * 17 16 15 31 31 H 1.08996 * 109.47274 * 300.00604 * 18 17 16 32 32 H 1.09000 * 109.46856 * 60.00544 * 18 17 16 33 33 H 0.96699 * 113.99728 * 180.02562 * 19 18 17 34 34 H 1.08007 * 119.96217 * 179.97438 * 20 16 15 35 35 H 1.07998 * 120.03659 * 179.97438 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 1.8260 -2.5202 -4.0077 10 1 1.8270 -0.4198 -5.2205 11 1 3.8064 -1.1207 -4.0082 12 7 2.0184 -0.6905 1.1962 13 6 2.1518 0.0062 2.3994 14 6 2.6142 -0.6471 3.5346 15 6 2.7503 0.0462 4.7211 16 6 2.4213 1.3880 4.7815 17 6 2.5706 2.1412 6.0782 18 6 3.9745 2.7440 6.1592 19 8 4.1163 3.4577 7.3890 20 6 1.9545 2.0399 3.6548 21 6 1.8150 1.3523 2.4652 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 0.7088 1.1613 -3.4844 26 1 2.2491 -1.6317 1.1526 27 1 2.8717 -1.6950 3.4882 28 1 3.1144 -0.4600 5.6030 29 1 1.8295 2.9392 6.1222 30 1 2.4195 1.4584 6.9143 31 1 4.7157 1.9460 6.1150 32 1 4.1255 3.4267 5.3230 33 1 4.9839 3.8676 7.5081 34 1 1.6980 3.0879 3.7054 35 1 1.4500 1.8620 1.5858 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380129655.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:37 Heat of formation + Delta-G solvation = -58.382818 kcal Electronic energy + Delta-G solvation = -15941.436834 eV Core-core repulsion = 13323.732775 eV Total energy + Delta-G solvation = -2617.704059 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.42676 -38.10303 -37.16521 -34.89514 -32.96547 -31.73690 -30.57018 -27.87269 -27.18145 -24.08405 -23.79592 -22.29222 -21.20170 -19.01301 -18.35997 -17.58733 -17.08765 -16.36854 -15.97829 -15.59768 -15.10365 -14.92624 -14.80500 -14.28384 -14.20317 -13.94751 -13.49011 -12.98145 -12.89342 -12.78836 -12.63490 -12.34499 -12.22624 -12.14309 -11.98112 -11.59147 -11.10289 -10.81695 -10.73991 -10.44560 -9.72197 -8.21742 -7.99942 -6.35248 0.65126 0.81347 1.42189 1.43134 1.51149 2.36451 2.95852 3.01831 3.11261 3.50936 4.02020 4.21425 4.27334 4.35542 4.45720 4.66257 4.70210 4.71934 4.73923 4.91746 5.00845 5.08846 5.11048 5.20233 5.27625 5.42012 5.58411 5.62153 5.68475 5.83603 5.90519 6.08645 6.22157 6.55535 6.85064 6.93597 7.22599 7.37931 8.85693 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.048711 B = 0.004550 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.683119 B = 6152.078660 C = 6217.697385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.277 3.723 3 H 0.009 0.991 4 C -0.550 4.550 5 H 0.061 0.939 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.966 3.034 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.272 1.272 12 N -0.732 5.732 13 C 0.210 3.790 14 C -0.215 4.215 15 C -0.061 4.061 16 C -0.163 4.163 17 C -0.061 4.061 18 C 0.082 3.918 19 O -0.594 6.594 20 C -0.067 4.067 21 C -0.224 4.224 22 H 0.028 0.972 23 H 0.022 0.978 24 H 0.066 0.934 25 H 0.266 0.734 26 H 0.394 0.606 27 H 0.130 0.870 28 H 0.144 0.856 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.397 0.603 34 H 0.128 0.872 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.015 1.156 14.204 15.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.172 3.828 3 H 0.026 0.974 4 C -0.588 4.588 5 H 0.079 0.921 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.791 3.209 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.198 1.198 12 N -0.357 5.357 13 C 0.103 3.897 14 C -0.238 4.238 15 C -0.080 4.080 16 C -0.165 4.165 17 C -0.098 4.098 18 C 0.004 3.996 19 O -0.402 6.402 20 C -0.086 4.086 21 C -0.247 4.247 22 H 0.047 0.953 23 H 0.041 0.959 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.228 0.772 27 H 0.148 0.852 28 H 0.161 0.839 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.246 0.754 34 H 0.146 0.854 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.243 1.183 13.937 14.617 hybrid contribution 0.675 -0.409 -1.445 1.647 sum 4.918 0.774 12.492 13.448 Atomic orbital electron populations 1.21991 0.98831 0.99091 0.99778 1.18331 0.90591 0.91989 0.81841 0.97366 1.21526 1.32409 1.13482 0.91420 0.92063 1.25687 0.94890 0.95628 1.01933 1.69995 1.36856 1.23710 1.24643 0.85491 0.78641 0.78677 0.78093 1.19425 1.20760 1.19759 1.45258 1.70850 1.12162 1.07408 1.18331 0.92563 0.91905 0.86873 1.20744 1.09985 1.00730 0.92316 1.20960 0.96535 0.93492 0.96990 1.19453 1.07192 0.94709 0.95191 1.20221 0.96473 0.99077 0.94075 1.22171 0.96998 0.94858 0.85539 1.86395 1.40876 1.72786 1.40161 1.20902 0.96773 0.99440 0.91443 1.20763 1.10710 0.94053 0.99158 0.95309 0.95937 0.91512 0.92490 0.77218 0.85250 0.83866 0.91134 0.90284 0.92886 0.93671 0.75357 0.85406 0.88266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.80 9.19 71.98 0.66 -6.14 16 2 C 0.28 13.94 2.25 44.24 0.10 14.04 16 3 H 0.01 0.48 6.50 -2.38 -0.02 0.47 16 4 C -0.55 -29.49 8.73 25.60 0.22 -29.27 16 5 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 6 C 0.02 1.01 5.30 84.65 0.45 1.46 16 7 N -0.91 -51.24 11.32 21.45 0.24 -51.00 16 8 Si 0.97 42.25 29.54 68.60 2.03 44.28 16 9 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 10 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 N -0.73 -31.29 5.24 -322.50 -1.69 -32.98 16 13 C 0.21 8.14 6.64 38.21 0.25 8.39 16 14 C -0.21 -6.80 9.90 22.40 0.22 -6.58 16 15 C -0.06 -1.65 9.69 22.25 0.22 -1.44 16 16 C -0.16 -4.47 5.14 -19.84 -0.10 -4.57 16 17 C -0.06 -1.37 5.71 29.85 0.17 -1.20 16 18 C 0.08 1.64 7.03 71.98 0.51 2.14 16 19 O -0.59 -11.35 13.66 -148.98 -2.04 -13.39 16 20 C -0.07 -2.12 9.69 22.25 0.22 -1.91 16 21 C -0.22 -8.69 8.83 22.40 0.20 -8.49 16 22 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.02 1.01 7.67 -2.39 -0.02 1.00 16 24 H 0.07 3.59 6.07 -2.39 -0.01 3.57 16 25 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 26 H 0.39 15.57 8.55 -92.70 -0.79 14.78 16 27 H 0.13 3.59 8.06 -2.91 -0.02 3.57 16 28 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 29 H 0.07 1.59 8.08 -2.39 -0.02 1.57 16 30 H 0.08 1.64 8.08 -2.38 -0.02 1.62 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.40 3.84 9.12 -74.06 -0.68 3.16 16 34 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 35 H 0.10 4.32 6.09 -2.91 -0.02 4.30 16 Total: -1.00 -60.79 293.99 1.28 -59.51 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: -0.37 Total: 27.13 kcal Atomic # 6 Polarization: -36.66 SS G_CDS: 3.11 Total: -33.55 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -1.45 Total: -83.98 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -2.04 Total: -13.39 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -60.79 1.28 -59.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380129655.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.125 kcal (2) G-P(sol) polarization free energy of solvation -60.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds