Wall clock time and date at job start Mon Mar 30 2020 03:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99777 * 2 1 4 4 H 1.48500 * 109.46957 * 269.99563 * 3 2 1 5 5 H 1.48498 * 109.47338 * 29.99730 * 3 2 1 6 6 H 1.48498 * 109.46800 * 149.99790 * 3 2 1 7 7 C 1.37880 * 120.00183 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99802 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99873 * 180.02562 * 7 2 1 10 10 H 1.09000 * 110.82119 * 56.66252 * 9 7 2 11 11 C 1.54893 * 110.75379 * 293.32564 * 9 7 2 12 12 C 1.54266 * 104.19500 * 203.74545 * 11 9 7 13 13 C 1.53872 * 106.60044 * 23.61099 * 12 11 9 14 14 H 1.09003 * 110.03622 * 240.71485 * 13 12 11 15 15 N 1.46897 * 110.07668 * 119.30490 * 13 12 11 16 16 C 1.46898 * 110.99903 * 87.80780 * 15 13 12 17 17 C 1.50702 * 109.47524 * 180.02562 * 16 15 13 18 18 C 1.39876 * 126.03632 * 90.02420 * 17 16 15 19 19 N 1.30836 * 108.19769 * 179.97438 * 18 17 16 20 20 N 1.40088 * 108.20988 * 0.02562 * 19 18 17 21 21 H 0.96995 * 126.03798 * 180.02562 * 20 19 18 22 22 C 1.34946 * 107.92211 * 359.75506 * 20 19 18 23 23 C 1.54266 * 106.59640 * 359.97438 * 13 12 11 24 24 H 0.97003 * 120.00681 * 0.02562 * 1 2 3 25 25 H 1.09002 * 110.48578 * 85.07022 * 11 9 7 26 26 H 1.08998 * 110.60430 * 322.47910 * 11 9 7 27 27 H 1.09002 * 110.02957 * 264.32709 * 12 11 9 28 28 H 1.08996 * 110.03427 * 142.89930 * 12 11 9 29 29 H 1.00897 * 111.00428 * 211.76576 * 15 13 12 30 30 H 1.09003 * 109.47545 * 300.00654 * 16 15 13 31 31 H 1.09005 * 109.46888 * 60.00553 * 16 15 13 32 32 H 1.07994 * 125.90121 * 0.02562 * 18 17 16 33 33 H 1.07997 * 126.12658 * 180.24644 * 22 20 19 34 34 H 1.09001 * 110.48620 * 95.07012 * 23 13 12 35 35 H 1.09004 * 110.48798 * 217.70845 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 1 3.8986 -0.6339 0.8523 11 6 4.0608 -0.6207 -1.3288 12 6 5.4751 -1.2257 -1.4460 13 6 5.4749 -2.5110 -0.6001 14 1 6.2141 -2.4335 0.1972 15 7 5.7705 -3.6731 -1.4486 16 6 7.2189 -3.8968 -1.5490 17 6 7.4830 -5.0938 -2.4256 18 6 7.6687 -5.0737 -3.8118 19 7 7.8727 -6.3017 -4.2146 20 7 7.8226 -7.1434 -3.0959 21 1 7.9404 -8.1061 -3.1004 22 6 7.5872 -6.3774 -2.0101 23 6 4.0607 -2.6419 0.0021 24 1 -0.4851 0.8400 -0.0004 25 1 4.1139 0.4670 -1.2824 26 1 3.4404 -0.9360 -2.1677 27 1 6.2144 -0.5243 -1.0592 28 1 5.6944 -1.4637 -2.4868 29 1 5.3000 -4.4983 -1.1085 30 1 7.6933 -3.0169 -1.9836 31 1 7.6285 -4.0766 -0.5549 32 1 7.6482 -4.1960 -4.4408 33 1 7.4962 -6.7265 -0.9922 34 1 3.4390 -3.2855 -0.6204 35 1 4.1136 -3.0296 1.0195 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382015784.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:09 Heat of formation + Delta-G solvation = 66.078015 kcal Electronic energy + Delta-G solvation = -16130.651017 eV Core-core repulsion = 13550.636735 eV Total energy + Delta-G solvation = -2580.014281 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.23774 -37.97138 -34.67812 -32.28836 -31.49379 -30.36245 -28.31789 -27.14668 -24.32156 -23.22962 -22.02489 -20.19681 -19.26161 -19.20408 -17.88105 -16.72477 -15.40700 -14.95658 -14.89551 -14.55891 -14.27324 -13.75425 -13.53543 -12.91935 -12.71327 -12.41600 -12.23243 -11.72513 -11.25269 -10.88820 -10.79300 -10.57739 -10.28199 -9.98432 -9.86765 -9.74634 -9.58350 -9.33408 -8.92948 -8.67325 -8.46770 -8.04514 -6.00339 -3.98380 1.77120 2.68384 2.78612 3.34931 3.42789 3.45253 4.49043 4.57540 4.76071 4.80897 5.12767 5.28467 5.40112 5.44035 5.54591 5.71368 5.75991 5.80890 6.05835 6.17165 6.37619 6.45996 6.52032 6.59745 6.71933 6.77557 6.90985 7.02766 7.11640 7.21240 7.49895 7.54487 7.65517 7.73520 7.86741 8.60935 9.03791 9.63243 11.13178 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.053168 B = 0.004735 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.504702 B = 5912.304245 C = 6060.337687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.069 3.931 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.265 1.265 7 C -0.506 4.506 8 H 0.072 0.928 9 C 0.014 3.986 10 H 0.031 0.969 11 C -0.125 4.125 12 C -0.113 4.113 13 C 0.081 3.919 14 H 0.036 0.964 15 N -0.677 5.677 16 C 0.134 3.866 17 C -0.226 4.226 18 C 0.071 3.929 19 N -0.302 5.302 20 N -0.481 5.481 21 H 0.437 0.563 22 C 0.058 3.942 23 C -0.108 4.108 24 H 0.262 0.738 25 H 0.040 0.960 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.065 0.935 29 H 0.338 0.662 30 H 0.077 0.923 31 H 0.030 0.970 32 H 0.183 0.817 33 H 0.173 0.827 34 H 0.070 0.930 35 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.808 -10.242 -2.613 19.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.131 4.131 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.190 1.190 7 C -0.544 4.544 8 H 0.090 0.910 9 C -0.006 4.006 10 H 0.049 0.951 11 C -0.163 4.163 12 C -0.152 4.152 13 C -0.028 4.028 14 H 0.054 0.946 15 N -0.309 5.309 16 C 0.004 3.996 17 C -0.238 4.238 18 C -0.116 4.116 19 N -0.125 5.125 20 N -0.189 5.189 21 H 0.280 0.720 22 C -0.090 4.090 23 C -0.146 4.146 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.156 0.844 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.200 0.800 33 H 0.190 0.810 34 H 0.089 0.911 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 16.844 -10.500 -4.196 20.287 hybrid contribution 0.425 0.618 1.570 1.740 sum 17.269 -9.882 -2.627 20.069 Atomic orbital electron populations 1.69907 1.06318 1.26803 1.51371 1.24994 0.94614 0.99006 0.94534 0.86880 0.80082 0.83724 0.78380 1.20353 1.22227 1.18979 1.21024 0.88807 0.94324 1.50255 0.90972 1.20044 0.96310 0.91403 0.92811 0.95112 1.22717 0.94234 0.97951 1.01369 1.22201 0.98127 0.95084 0.99740 1.22288 0.97393 0.90626 0.92474 0.94604 1.60698 1.07498 1.07455 1.55245 1.20191 0.89662 0.94211 0.95496 1.20122 1.14383 0.94586 0.94696 1.23832 0.97774 0.95363 0.94645 1.77329 1.24977 1.01680 1.08495 1.46267 1.58079 1.09781 1.04778 0.71973 1.22403 1.01256 0.91806 0.93532 1.22473 0.93221 1.00313 0.98563 0.92803 0.94142 0.91509 0.93564 0.91658 0.84428 0.90461 0.95216 0.79976 0.80979 0.91125 0.93313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.01 13.96 55.43 0.77 -27.24 16 2 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 3 Si 0.88 22.02 24.79 -169.99 -4.21 17.81 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.26 -6.33 6.45 56.52 0.36 -5.97 16 7 C -0.51 -14.27 9.07 -34.44 -0.31 -14.58 16 8 H 0.07 2.20 8.01 -52.49 -0.42 1.78 16 9 C 0.01 0.32 2.27 -89.79 -0.20 0.11 16 10 H 0.03 0.74 7.02 -51.93 -0.36 0.37 16 11 C -0.12 -2.69 5.32 -25.07 -0.13 -2.82 16 12 C -0.11 -1.98 6.55 -25.61 -0.17 -2.15 16 13 C 0.08 1.32 3.25 -66.60 -0.22 1.11 16 14 H 0.04 0.55 7.81 -51.93 -0.41 0.15 16 15 N -0.68 -9.58 6.15 -106.81 -0.66 -10.24 16 16 C 0.13 1.57 5.99 -4.98 -0.03 1.54 16 17 C -0.23 -2.52 5.61 -105.05 -0.59 -3.11 16 18 C 0.07 0.84 11.96 -17.36 -0.21 0.63 16 19 N -0.30 -3.74 12.70 30.62 0.39 -3.35 16 20 N -0.48 -4.48 7.36 30.44 0.22 -4.26 16 21 H 0.44 2.60 8.96 -182.61 -1.64 0.96 16 22 C 0.06 0.53 11.90 -17.22 -0.21 0.33 16 23 C -0.11 -2.09 5.67 -25.09 -0.14 -2.23 16 24 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 25 H 0.04 0.88 5.41 -51.93 -0.28 0.60 16 26 H 0.07 1.52 8.04 -51.93 -0.42 1.10 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.06 1.10 7.92 -51.93 -0.41 0.69 16 29 H 0.34 4.59 8.31 -39.29 -0.33 4.26 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.03 0.32 8.07 -51.93 -0.42 -0.10 16 32 H 0.18 1.85 8.06 -52.49 -0.42 1.43 16 33 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.07 1.43 7.85 -51.93 -0.41 1.03 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 284.95 15.07 4.29 4.29 Total: -1.00 -32.29 284.95 -7.87 -40.16 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.38 Total: 2.07 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -2.31 Total: -19.25 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.73 Total: -45.09 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.21 Total: 17.81 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.29 -7.87 -40.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382015784.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.238 kcal (2) G-P(sol) polarization free energy of solvation -32.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds