Wall clock time and date at job start Mon Mar 30 2020 03:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99777 * 2 1 4 4 H 1.48500 * 109.46957 * 269.99563 * 3 2 1 5 5 H 1.48498 * 109.47338 * 29.99730 * 3 2 1 6 6 H 1.48498 * 109.46800 * 149.99790 * 3 2 1 7 7 C 1.37880 * 120.00183 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99802 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99873 * 180.02562 * 7 2 1 10 10 H 1.09000 * 110.82119 * 56.66252 * 9 7 2 11 11 C 1.54893 * 110.75379 * 293.32564 * 9 7 2 12 12 C 1.54266 * 104.19500 * 203.74545 * 11 9 7 13 13 C 1.53872 * 106.60044 * 23.61099 * 12 11 9 14 14 H 1.09003 * 110.03622 * 240.71485 * 13 12 11 15 15 N 1.46897 * 110.07668 * 119.30490 * 13 12 11 16 16 C 1.46898 * 110.99903 * 87.80780 * 15 13 12 17 17 C 1.50702 * 109.47524 * 180.02562 * 16 15 13 18 18 C 1.39876 * 126.03632 * 90.02420 * 17 16 15 19 19 N 1.30836 * 108.19769 * 179.97438 * 18 17 16 20 20 N 1.40088 * 108.20988 * 0.02562 * 19 18 17 21 21 H 0.96995 * 126.03798 * 180.02562 * 20 19 18 22 22 C 1.34946 * 107.92211 * 359.75506 * 20 19 18 23 23 C 1.54266 * 106.59640 * 359.97438 * 13 12 11 24 24 H 0.97003 * 120.00681 * 0.02562 * 1 2 3 25 25 H 1.09002 * 110.48578 * 85.07022 * 11 9 7 26 26 H 1.08998 * 110.60430 * 322.47910 * 11 9 7 27 27 H 1.09002 * 110.02957 * 264.32709 * 12 11 9 28 28 H 1.08996 * 110.03427 * 142.89930 * 12 11 9 29 29 H 1.00897 * 111.00428 * 211.76576 * 15 13 12 30 30 H 1.09003 * 109.47545 * 300.00654 * 16 15 13 31 31 H 1.09005 * 109.46888 * 60.00553 * 16 15 13 32 32 H 1.07994 * 125.90121 * 0.02562 * 18 17 16 33 33 H 1.07997 * 126.12658 * 180.24644 * 22 20 19 34 34 H 1.09001 * 110.48620 * 95.07012 * 23 13 12 35 35 H 1.09004 * 110.48798 * 217.70845 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 1 3.8986 -0.6339 0.8523 11 6 4.0608 -0.6207 -1.3288 12 6 5.4751 -1.2257 -1.4460 13 6 5.4749 -2.5110 -0.6001 14 1 6.2141 -2.4335 0.1972 15 7 5.7705 -3.6731 -1.4486 16 6 7.2189 -3.8968 -1.5490 17 6 7.4830 -5.0938 -2.4256 18 6 7.6687 -5.0737 -3.8118 19 7 7.8727 -6.3017 -4.2146 20 7 7.8226 -7.1434 -3.0959 21 1 7.9404 -8.1061 -3.1004 22 6 7.5872 -6.3774 -2.0101 23 6 4.0607 -2.6419 0.0021 24 1 -0.4851 0.8400 -0.0004 25 1 4.1139 0.4670 -1.2824 26 1 3.4404 -0.9360 -2.1677 27 1 6.2144 -0.5243 -1.0592 28 1 5.6944 -1.4637 -2.4868 29 1 5.3000 -4.4983 -1.1085 30 1 7.6933 -3.0169 -1.9836 31 1 7.6285 -4.0766 -0.5549 32 1 7.6482 -4.1960 -4.4408 33 1 7.4962 -6.7265 -0.9922 34 1 3.4390 -3.2855 -0.6204 35 1 4.1136 -3.0296 1.0195 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382015784.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:08 Heat of formation + Delta-G solvation = 42.321050 kcal Electronic energy + Delta-G solvation = -16131.681196 eV Core-core repulsion = 13550.636735 eV Total energy + Delta-G solvation = -2581.044461 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.01028 -39.41613 -36.00678 -34.26244 -32.35914 -31.44612 -29.97820 -28.55439 -25.65658 -24.77474 -22.83153 -21.25660 -20.75810 -20.63044 -18.80916 -18.61763 -16.80584 -16.67377 -15.84542 -15.64512 -15.33740 -14.96893 -14.70276 -14.68380 -14.02294 -13.86005 -13.73430 -12.99406 -12.83110 -12.55419 -12.20623 -11.91585 -11.74591 -11.53021 -11.42226 -11.38311 -11.08541 -10.96887 -10.64618 -10.54140 -9.50492 -9.08640 -8.25180 -6.27644 1.03095 1.36618 1.38431 1.49649 1.85089 2.13712 2.38476 3.10801 3.54847 3.92706 3.99644 4.07525 4.13033 4.32946 4.35806 4.66956 4.74856 4.80901 4.84801 4.90582 4.97036 5.04534 5.15114 5.20303 5.28011 5.34720 5.45651 5.53996 5.71224 5.72844 5.85142 6.37855 6.39883 6.50279 6.65881 6.77647 6.79224 7.37712 8.92100 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.053168 B = 0.004735 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.504702 B = 5912.304245 C = 6060.337687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.009 3.991 3 Si 0.944 3.056 4 H -0.269 1.269 5 H -0.295 1.295 6 H -0.241 1.241 7 C -0.511 4.511 8 H 0.029 0.971 9 C 0.005 3.995 10 H 0.033 0.967 11 C -0.124 4.124 12 C -0.106 4.106 13 C 0.095 3.905 14 H 0.058 0.942 15 N -0.686 5.686 16 C 0.141 3.859 17 C -0.248 4.248 18 C 0.057 3.943 19 N -0.338 5.338 20 N -0.474 5.474 21 H 0.450 0.550 22 C 0.074 3.926 23 C -0.103 4.103 24 H 0.264 0.736 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.341 0.659 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.189 0.811 33 H 0.208 0.792 34 H 0.052 0.948 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.696 -10.300 -2.065 22.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.187 4.187 3 Si 0.769 3.231 4 H -0.194 1.194 5 H -0.222 1.222 6 H -0.165 1.165 7 C -0.549 4.549 8 H 0.047 0.953 9 C -0.015 4.015 10 H 0.051 0.949 11 C -0.162 4.162 12 C -0.144 4.144 13 C -0.015 4.015 14 H 0.076 0.924 15 N -0.318 5.318 16 C 0.012 3.988 17 C -0.260 4.260 18 C -0.129 4.129 19 N -0.161 5.161 20 N -0.183 5.183 21 H 0.296 0.704 22 C -0.075 4.075 23 C -0.141 4.141 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.159 0.841 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.206 0.794 33 H 0.225 0.775 34 H 0.070 0.930 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 19.763 -10.595 -3.660 22.721 hybrid contribution -0.543 0.488 1.406 1.585 sum 19.220 -10.107 -2.253 21.832 Atomic orbital electron populations 1.70066 1.08333 1.27872 1.53456 1.25899 0.95366 1.03124 0.94352 0.85850 0.79536 0.78659 0.79015 1.19398 1.22241 1.16466 1.21379 0.91741 0.92665 1.49151 0.95253 1.20049 0.92987 0.94516 0.93903 0.94896 1.22591 0.96592 0.97943 0.99107 1.22161 0.95581 0.95873 1.00776 1.22057 0.95470 0.91024 0.92907 0.92414 1.60637 1.09497 1.07000 1.54709 1.20154 0.87775 0.94486 0.96426 1.20173 1.16143 0.95368 0.94349 1.24080 0.97796 0.95569 0.95466 1.77271 1.26408 1.02291 1.10120 1.46327 1.57187 1.10486 1.04287 0.70353 1.22932 0.98748 0.91112 0.94703 1.22358 0.95065 0.97341 0.99308 0.92746 0.94303 0.93857 0.91318 0.90922 0.84065 0.90509 0.93512 0.79439 0.77498 0.92967 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.12 13.96 21.45 0.30 -60.82 16 2 C 0.01 0.52 5.46 84.66 0.46 0.98 16 3 Si 0.94 45.24 24.79 68.60 1.70 46.94 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.24 -10.55 6.45 99.48 0.64 -9.91 16 7 C -0.51 -29.60 9.07 25.60 0.23 -29.37 16 8 H 0.03 1.88 8.01 -2.91 -0.02 1.86 16 9 C 0.00 0.21 2.27 -10.26 -0.02 0.19 16 10 H 0.03 1.51 7.02 -2.39 -0.02 1.49 16 11 C -0.12 -5.17 5.32 31.67 0.17 -5.00 16 12 C -0.11 -3.36 6.55 31.32 0.21 -3.16 16 13 C 0.09 2.79 3.25 45.64 0.15 2.94 16 14 H 0.06 1.49 7.81 -2.39 -0.02 1.47 16 15 N -0.69 -17.49 6.15 -491.83 -3.03 -20.52 16 16 C 0.14 2.80 5.99 85.56 0.51 3.31 16 17 C -0.25 -4.89 5.61 -20.14 -0.11 -5.00 16 18 C 0.06 1.28 11.96 85.24 1.02 2.30 16 19 N -0.34 -7.91 12.70 -57.02 -0.72 -8.64 16 20 N -0.47 -7.74 7.36 -57.59 -0.42 -8.16 16 21 H 0.45 4.33 8.96 -213.33 -1.91 2.41 16 22 C 0.07 1.11 11.90 83.54 0.99 2.11 16 23 C -0.10 -3.85 5.67 31.66 0.18 -3.67 16 24 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 25 H 0.04 1.60 5.41 -2.39 -0.01 1.59 16 26 H 0.04 1.96 8.04 -2.39 -0.02 1.94 16 27 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.07 2.22 7.92 -2.39 -0.02 2.20 16 29 H 0.34 8.40 8.31 -89.70 -0.75 7.65 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.05 0.79 8.07 -2.38 -0.02 0.77 16 32 H 0.19 3.66 8.06 -2.91 -0.02 3.64 16 33 H 0.21 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.05 2.13 7.85 -2.39 -0.02 2.11 16 35 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -71.42 284.95 -0.01 -71.43 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -1.63 Total: 14.15 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 3.79 Total: -34.38 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -3.88 Total: -98.14 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.70 Total: 46.94 kcal Total: -71.42 -0.01 -71.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382015784.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.751 kcal (2) G-P(sol) polarization free energy of solvation -71.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds