Wall clock time and date at job start Mon Mar 30 2020 03:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38605 * 120.07948 * 2 1 4 4 C 1.38884 * 117.97158 * 179.97438 * 3 2 1 5 5 C 1.38608 * 117.96754 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.07439 * 180.02562 * 5 4 3 7 7 N 1.46905 * 109.47066 * 95.00053 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46916 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.46700 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.46820 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00070 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00019 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00228 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00068 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46757 * 60.00769 * 15 13 11 17 17 H 1.48495 * 109.46824 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47105 * 300.00477 * 15 13 11 19 19 N 1.31932 * 119.84506 * 0.27670 * 5 4 3 20 20 N 1.28345 * 122.18544 * 359.41787 * 19 5 4 21 21 H 1.09000 * 109.47339 * 89.99997 * 1 2 3 22 22 H 1.09000 * 109.47212 * 210.00025 * 1 2 3 23 23 H 1.08992 * 109.46881 * 329.99901 * 1 2 3 24 24 H 1.08006 * 121.01113 * 0.02562 * 3 2 1 25 25 H 1.07998 * 121.01500 * 180.02562 * 4 3 2 26 26 H 1.09001 * 109.47558 * 335.00216 * 6 5 4 27 27 H 1.08998 * 109.47216 * 214.99878 * 6 5 4 28 28 H 1.00901 * 110.99869 * 56.04737 * 7 6 5 29 29 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 30 30 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 31 31 H 1.08995 * 109.46615 * 299.99641 * 9 8 7 32 32 H 1.08996 * 109.46939 * 60.00272 * 9 8 7 33 33 H 1.08993 * 109.47740 * 299.99810 * 10 9 8 34 34 H 1.09005 * 109.47573 * 59.99976 * 10 9 8 35 35 H 0.97002 * 120.00555 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2017 1.1994 0.0000 4 6 3.5896 1.1483 0.0005 5 6 4.1942 -0.0990 0.0005 6 6 5.6971 -0.2097 0.0017 7 7 6.1754 -0.3667 1.3818 8 6 7.6397 -0.4774 1.4220 9 6 8.0992 -0.6399 2.8723 10 6 9.6242 -0.7558 2.9141 11 6 10.0769 -0.9152 4.3427 12 1 9.3495 -0.9325 5.1408 13 6 11.4195 -1.0400 4.6306 14 7 12.3051 -1.0195 3.6586 15 14 11.9805 -1.2383 6.4013 16 1 11.3745 -2.4652 6.9781 17 1 13.4607 -1.3507 6.4419 18 1 11.5525 -0.0561 7.1915 19 7 3.4508 -1.1889 -0.0056 20 7 2.1682 -1.1417 -0.0005 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5138 24 1 1.6796 2.1449 0.0004 25 1 4.1798 2.0528 0.0010 26 1 6.1283 0.6926 -0.4319 27 1 5.9980 -1.0757 -0.5878 28 1 5.7401 -1.1605 1.8273 29 1 7.9545 -1.3451 0.8422 30 1 8.0840 0.4232 0.9984 31 1 7.7844 0.2275 3.4524 32 1 7.6550 -1.5408 3.2954 33 1 9.9387 -1.6234 2.3341 34 1 10.0689 0.1448 2.4908 35 1 13.2497 -1.1069 3.8611 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396723008.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:19 Heat of formation + Delta-G solvation = 34.649604 kcal Electronic energy + Delta-G solvation = -15275.572430 eV Core-core repulsion = 12694.195310 eV Total energy + Delta-G solvation = -2581.377119 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.22822 -36.74600 -34.41858 -33.71897 -32.94151 -31.12711 -28.87254 -26.79085 -25.21412 -23.84951 -22.53881 -22.04110 -20.13925 -17.68402 -16.56559 -16.20612 -15.75895 -15.56180 -15.17499 -14.56731 -14.18038 -13.90024 -13.45805 -13.17083 -13.07090 -12.75580 -12.53816 -12.10128 -11.67788 -11.42413 -11.02789 -10.80746 -10.57354 -10.53125 -10.39945 -9.82104 -9.79594 -9.67672 -9.30966 -9.05267 -8.32405 -8.27279 -5.97568 -3.99656 0.63097 0.69787 3.30380 3.35626 3.39507 3.42514 3.73817 4.19439 4.31945 4.40929 4.47289 4.60868 4.76231 4.89997 5.12753 5.17186 5.27199 5.38175 5.47955 5.59389 5.62702 5.76823 5.86346 5.98752 6.05435 6.30593 6.69673 6.73064 7.13618 7.23614 7.52146 7.70158 7.85109 8.02737 8.45996 8.57739 9.07292 9.64215 11.13879 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.059547 B = 0.003308 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.103297 B = 8462.682975 C = 8632.601747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.060 3.940 3 C -0.122 4.122 4 C -0.095 4.095 5 C 0.074 3.926 6 C 0.110 3.890 7 N -0.686 5.686 8 C 0.059 3.941 9 C -0.107 4.107 10 C 0.023 3.977 11 C -0.520 4.520 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 N -0.236 5.236 20 N -0.245 5.245 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.149 0.851 25 H 0.152 0.848 26 H 0.091 0.909 27 H 0.053 0.947 28 H 0.344 0.656 29 H 0.029 0.971 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.014 0.986 34 H 0.016 0.984 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.818 5.667 -9.682 23.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.085 4.085 3 C -0.151 4.151 4 C -0.125 4.125 5 C -0.072 4.072 6 C -0.021 4.021 7 N -0.318 5.318 8 C -0.069 4.069 9 C -0.145 4.145 10 C -0.015 4.015 11 C -0.558 4.558 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 N -0.078 5.078 20 N -0.087 5.087 21 H 0.100 0.900 22 H 0.100 0.900 23 H 0.097 0.903 24 H 0.166 0.834 25 H 0.170 0.830 26 H 0.109 0.891 27 H 0.071 0.929 28 H 0.162 0.838 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.033 0.967 34 H 0.035 0.965 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.673 4.660 -9.601 23.265 hybrid contribution 0.631 0.657 0.620 1.101 sum -20.042 5.316 -8.981 22.597 Atomic orbital electron populations 1.20660 0.87603 1.04028 1.03459 1.22905 0.99066 0.90720 0.95801 1.22296 0.94723 0.99803 0.98264 1.22330 0.95082 0.99518 0.95522 1.22854 0.98600 0.90565 0.95140 1.20754 0.86487 1.02568 0.92274 1.60643 1.08235 1.48638 1.14285 1.22175 0.84776 1.00173 0.99771 1.21631 0.99699 1.00632 0.92573 1.19059 0.88340 0.97105 0.96993 1.21226 0.91943 1.49695 0.92952 0.92720 1.25028 0.96912 0.95416 0.97141 1.69953 1.01479 1.50694 1.31525 0.86651 0.77395 0.78706 0.85214 1.20245 1.21308 1.20235 1.72943 0.99311 1.27118 1.08467 1.72975 1.01526 1.24816 1.09394 0.89997 0.89964 0.90338 0.83351 0.83014 0.89091 0.92897 0.83839 0.95265 0.91188 0.92544 0.93541 0.96717 0.96545 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.62 10.20 36.01 0.37 -0.25 16 2 C 0.06 0.60 6.87 -82.41 -0.57 0.04 16 3 C -0.12 -1.04 9.88 -39.21 -0.39 -1.42 16 4 C -0.10 -0.94 9.85 -39.21 -0.39 -1.32 16 5 C 0.07 0.92 6.38 -82.41 -0.53 0.39 16 6 C 0.11 1.37 6.02 -4.97 -0.03 1.34 16 7 N -0.69 -10.29 6.49 -115.05 -0.75 -11.03 16 8 C 0.06 1.02 5.69 -3.82 -0.02 1.00 16 9 C -0.11 -2.25 5.41 -26.73 -0.14 -2.40 16 10 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 11 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 12 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 15 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 N -0.24 -3.44 11.43 33.59 0.38 -3.06 16 20 N -0.24 -3.34 11.43 33.60 0.38 -2.95 16 21 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.08 0.32 8.09 -51.93 -0.42 -0.10 16 24 H 0.15 0.73 8.06 -52.48 -0.42 0.31 16 25 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 26 H 0.09 0.97 8.05 -51.93 -0.42 0.56 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.34 5.29 8.72 -39.29 -0.34 4.95 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 303.64 15.07 4.58 4.58 Total: -1.00 -32.67 303.64 -7.30 -39.98 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -5.37 Total: -1.95 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -2.24 Total: -15.95 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.76 Total: -43.60 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.67 -7.30 -39.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396723008.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.625 kcal (2) G-P(sol) polarization free energy of solvation -32.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds