Wall clock time and date at job start Mon Mar 30 2020 03:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38605 * 120.07948 * 2 1 4 4 C 1.38884 * 117.97158 * 179.97438 * 3 2 1 5 5 C 1.38608 * 117.96754 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.07439 * 180.02562 * 5 4 3 7 7 N 1.46905 * 109.47066 * 95.00053 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46916 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.46700 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.46820 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00070 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00019 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00228 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00068 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46757 * 60.00769 * 15 13 11 17 17 H 1.48495 * 109.46824 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47105 * 300.00477 * 15 13 11 19 19 N 1.31932 * 119.84506 * 0.27670 * 5 4 3 20 20 N 1.28345 * 122.18544 * 359.41787 * 19 5 4 21 21 H 1.09000 * 109.47339 * 89.99997 * 1 2 3 22 22 H 1.09000 * 109.47212 * 210.00025 * 1 2 3 23 23 H 1.08992 * 109.46881 * 329.99901 * 1 2 3 24 24 H 1.08006 * 121.01113 * 0.02562 * 3 2 1 25 25 H 1.07998 * 121.01500 * 180.02562 * 4 3 2 26 26 H 1.09001 * 109.47558 * 335.00216 * 6 5 4 27 27 H 1.08998 * 109.47216 * 214.99878 * 6 5 4 28 28 H 1.00901 * 110.99869 * 56.04737 * 7 6 5 29 29 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 30 30 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 31 31 H 1.08995 * 109.46615 * 299.99641 * 9 8 7 32 32 H 1.08996 * 109.46939 * 60.00272 * 9 8 7 33 33 H 1.08993 * 109.47740 * 299.99810 * 10 9 8 34 34 H 1.09005 * 109.47573 * 59.99976 * 10 9 8 35 35 H 0.97002 * 120.00555 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2017 1.1994 0.0000 4 6 3.5896 1.1483 0.0005 5 6 4.1942 -0.0990 0.0005 6 6 5.6971 -0.2097 0.0017 7 7 6.1754 -0.3667 1.3818 8 6 7.6397 -0.4774 1.4220 9 6 8.0992 -0.6399 2.8723 10 6 9.6242 -0.7558 2.9141 11 6 10.0769 -0.9152 4.3427 12 1 9.3495 -0.9325 5.1408 13 6 11.4195 -1.0400 4.6306 14 7 12.3051 -1.0195 3.6586 15 14 11.9805 -1.2383 6.4013 16 1 11.3745 -2.4652 6.9781 17 1 13.4607 -1.3507 6.4419 18 1 11.5525 -0.0561 7.1915 19 7 3.4508 -1.1889 -0.0056 20 7 2.1682 -1.1417 -0.0005 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5138 24 1 1.6796 2.1449 0.0004 25 1 4.1798 2.0528 0.0010 26 1 6.1283 0.6926 -0.4319 27 1 5.9980 -1.0757 -0.5878 28 1 5.7401 -1.1605 1.8273 29 1 7.9545 -1.3451 0.8422 30 1 8.0840 0.4232 0.9984 31 1 7.7844 0.2275 3.4524 32 1 7.6550 -1.5408 3.2954 33 1 9.9387 -1.6234 2.3341 34 1 10.0689 0.1448 2.4908 35 1 13.2497 -1.1069 3.8611 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396723008.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:19 Heat of formation + Delta-G solvation = 11.847907 kcal Electronic energy + Delta-G solvation = -15276.561185 eV Core-core repulsion = 12694.195310 eV Total energy + Delta-G solvation = -2582.365875 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.04543 -38.00463 -35.85424 -34.79276 -34.26470 -32.75173 -29.86061 -28.20026 -26.54038 -24.82074 -23.91472 -23.11260 -21.91771 -18.52313 -18.48490 -17.35460 -16.79818 -16.61971 -16.38435 -16.13962 -15.37753 -15.24608 -14.46266 -14.25312 -14.06281 -13.72466 -13.56825 -13.44258 -13.22187 -13.04837 -12.65018 -12.48668 -12.30050 -11.89256 -11.54650 -11.40856 -11.18987 -11.10165 -10.59863 -10.58143 -10.54687 -9.49523 -8.20133 -6.31134 -0.12327 -0.08414 1.39943 1.43175 1.51138 2.40581 2.46965 2.92233 3.12875 3.33044 3.53585 3.63396 3.77144 4.07058 4.14003 4.22785 4.31991 4.49759 4.60017 4.65882 4.71984 4.75939 4.88922 4.97115 5.07009 5.08463 5.21876 5.25445 5.39568 5.51242 5.74889 5.85769 5.92189 6.24837 6.27421 6.85513 7.37965 7.74038 8.91583 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.059547 B = 0.003308 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.103297 B = 8462.682975 C = 8632.601747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.054 3.946 3 C -0.111 4.111 4 C -0.098 4.098 5 C 0.057 3.943 6 C 0.113 3.887 7 N -0.684 5.684 8 C 0.072 3.928 9 C -0.093 4.093 10 C 0.026 3.974 11 C -0.546 4.546 12 H 0.058 0.942 13 C -0.001 4.001 14 N -0.933 5.933 15 Si 0.965 3.035 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.266 1.266 19 N -0.277 5.277 20 N -0.286 5.286 21 H 0.096 0.904 22 H 0.074 0.926 23 H 0.107 0.893 24 H 0.192 0.808 25 H 0.179 0.821 26 H 0.112 0.888 27 H 0.046 0.954 28 H 0.340 0.660 29 H 0.026 0.974 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.044 0.956 33 H -0.009 1.009 34 H -0.004 1.004 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.350 7.266 -9.170 25.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.091 4.091 3 C -0.140 4.140 4 C -0.127 4.127 5 C -0.089 4.089 6 C -0.017 4.017 7 N -0.315 5.315 8 C -0.056 4.056 9 C -0.132 4.132 10 C -0.012 4.012 11 C -0.584 4.584 12 H 0.076 0.924 13 C -0.198 4.198 14 N -0.573 5.573 15 Si 0.789 3.211 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.191 1.191 19 N -0.118 5.118 20 N -0.128 5.128 21 H 0.115 0.885 22 H 0.093 0.907 23 H 0.125 0.875 24 H 0.209 0.791 25 H 0.196 0.804 26 H 0.130 0.870 27 H 0.064 0.936 28 H 0.157 0.843 29 H 0.044 0.956 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.009 0.991 34 H 0.015 0.985 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.229 6.248 -9.097 24.818 hybrid contribution 1.026 0.202 0.409 1.123 sum -21.203 6.450 -8.688 23.804 Atomic orbital electron populations 1.20802 0.84995 1.05069 1.04682 1.23572 1.00848 0.90522 0.94180 1.22787 0.94263 1.00907 0.95993 1.22673 0.96130 0.99260 0.94649 1.22872 0.98189 0.91523 0.96301 1.20792 0.87125 1.03257 0.90524 1.60576 1.06490 1.48302 1.16151 1.21889 0.86431 1.00360 0.96946 1.21380 0.96032 1.00446 0.95293 1.18958 0.91792 0.94947 0.95462 1.21685 0.92578 1.49903 0.94234 0.92389 1.25983 0.97021 0.94814 1.02015 1.70083 1.01903 1.51382 1.33979 0.85504 0.77040 0.79167 0.79368 1.19317 1.20678 1.19094 1.72819 1.00170 1.28697 1.10121 1.72877 1.01392 1.27072 1.11461 0.88518 0.90731 0.87479 0.79058 0.80406 0.86976 0.93603 0.84285 0.95613 0.90537 0.92654 0.93682 0.99087 0.98537 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 10.20 71.24 0.73 -0.25 16 2 C 0.05 1.00 6.87 42.63 0.29 1.29 16 3 C -0.11 -1.53 9.88 22.51 0.22 -1.31 16 4 C -0.10 -1.69 9.85 22.51 0.22 -1.47 16 5 C 0.06 1.39 6.38 42.63 0.27 1.66 16 6 C 0.11 2.75 6.02 85.55 0.52 3.26 16 7 N -0.68 -20.11 6.49 -517.92 -3.36 -23.47 16 8 C 0.07 2.48 5.69 86.30 0.49 2.97 16 9 C -0.09 -3.95 5.41 30.59 0.17 -3.78 16 10 C 0.03 1.40 4.97 29.85 0.15 1.55 16 11 C -0.55 -31.84 9.11 25.60 0.23 -31.61 16 12 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 13 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 14 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16 15 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 16 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 N -0.28 -8.17 11.43 -47.63 -0.54 -8.71 16 20 N -0.29 -7.80 11.43 -47.62 -0.54 -8.35 16 21 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 22 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.11 0.46 8.09 -2.39 -0.02 0.44 16 24 H 0.19 0.90 8.06 -2.91 -0.02 0.87 16 25 H 0.18 2.01 8.06 -2.91 -0.02 1.98 16 26 H 0.11 2.20 8.05 -2.39 -0.02 2.18 16 27 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.34 10.48 8.72 -89.69 -0.78 9.70 16 29 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 33 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 34 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 35 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -72.11 303.64 1.90 -70.21 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 0.28 Total: 7.85 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: 3.75 Total: -27.26 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -4.17 Total: -97.76 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -72.11 1.90 -70.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396723008.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.061 kcal (2) G-P(sol) polarization free energy of solvation -72.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds