Wall clock time and date at job start Mon Mar 30 2020 03:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46822 * 2 1 4 4 N 1.46893 * 109.47269 * 239.99661 * 2 1 3 5 5 C 1.53001 * 109.46810 * 119.99493 * 2 1 3 6 6 H 1.08995 * 109.47355 * 300.00313 * 5 2 1 7 7 C 1.53002 * 109.46810 * 180.02562 * 5 2 1 8 8 O 1.42907 * 109.47005 * 60.00184 * 5 2 1 9 9 C 1.35672 * 116.99710 * 201.51324 * 8 5 2 10 10 C 1.39310 * 119.81420 * 176.19384 * 9 8 5 11 11 C 1.36436 * 120.18453 * 179.76237 * 10 9 8 12 12 C 1.40835 * 119.81340 * 0.50482 * 11 10 9 13 13 C 1.41216 * 120.18405 * 179.72412 * 12 11 10 14 14 H 1.08000 * 120.00041 * 159.22733 * 13 12 11 15 15 C 1.39888 * 119.99560 * 339.22773 * 13 12 11 16 16 N 1.30880 * 120.00142 * 328.55012 * 15 13 12 17 17 Si 1.86796 * 119.99939 * 148.55661 * 15 13 12 18 18 H 1.48500 * 109.47699 * 94.97454 * 17 15 13 19 19 H 1.48502 * 109.47081 * 214.97925 * 17 15 13 20 20 H 1.48501 * 109.46999 * 334.97806 * 17 15 13 21 21 C 1.40840 * 119.63870 * 359.74622 * 12 11 10 22 22 C 1.36441 * 119.81071 * 359.97438 * 21 12 11 23 23 H 1.08995 * 109.47417 * 300.00232 * 1 2 3 24 24 H 1.08999 * 109.47058 * 60.00342 * 1 2 3 25 25 H 1.08994 * 109.47256 * 180.02562 * 1 2 3 26 26 H 1.00906 * 111.00176 * 60.00036 * 4 2 1 27 27 H 1.00897 * 110.99850 * 183.95680 * 4 2 1 28 28 H 1.08999 * 109.46822 * 60.00507 * 7 5 2 29 29 H 1.09006 * 109.46687 * 180.02562 * 7 5 2 30 30 H 1.08995 * 109.47417 * 300.00275 * 7 5 2 31 31 H 1.08002 * 119.90881 * 0.02562 * 10 9 8 32 32 H 1.08005 * 120.09973 * 180.25191 * 11 10 9 33 33 H 0.96998 * 119.99985 * 180.02562 * 16 15 13 34 34 H 1.08002 * 120.09299 * 179.97438 * 21 12 11 35 35 H 1.07995 * 119.90638 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.0400 -0.7212 1.2493 6 1 1.6766 -0.2073 2.1392 7 6 3.5700 -0.7206 1.2497 8 8 1.5636 -2.0685 1.2494 9 6 1.5264 -2.7085 2.4451 10 6 0.9982 -3.9951 2.5259 11 6 0.9616 -4.6476 3.7235 12 6 1.4498 -4.0128 4.8820 13 6 1.4103 -4.6787 6.1267 14 1 2.0615 -4.3636 6.9286 15 6 0.5277 -5.7465 6.3208 16 7 -0.6208 -5.7686 5.6937 17 14 0.9883 -7.1408 7.4754 18 1 0.4117 -6.8819 8.8192 19 1 0.4526 -8.4202 6.9449 20 1 2.4671 -7.2288 7.5800 21 6 1.9773 -2.7100 4.7925 22 6 2.0119 -2.0736 3.5861 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.6962 -0.2350 -2.0385 27 1 3.0262 -0.7626 -1.1907 28 1 3.9329 0.3072 1.2499 29 1 3.9332 -1.2348 2.1395 30 1 3.9337 -1.2342 0.3598 31 1 0.6206 -4.4790 1.6372 32 1 0.5555 -5.6466 3.7838 33 1 -1.2329 -6.5088 5.8286 34 1 2.3533 -2.2161 5.6763 35 1 2.4157 -1.0744 3.5158 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403464504.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:18 Heat of formation + Delta-G solvation = -45.115113 kcal Electronic energy + Delta-G solvation = -16445.908436 eV Core-core repulsion = 13828.779708 eV Total energy + Delta-G solvation = -2617.128728 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.75724 -38.63757 -36.52709 -35.09574 -32.07556 -30.96047 -30.88591 -29.97565 -26.79646 -24.65682 -23.26617 -22.47309 -20.79499 -19.26189 -18.66023 -17.13475 -16.94478 -16.29986 -15.91738 -15.73528 -15.64445 -14.81417 -14.35209 -14.27620 -14.11499 -13.72141 -13.49224 -12.99439 -12.96220 -12.77560 -12.74334 -12.61666 -12.44567 -12.13440 -11.76642 -11.71332 -11.32070 -11.07730 -10.74657 -9.52979 -9.48498 -8.97413 -8.65509 -6.14944 0.99744 1.04219 1.38894 1.48989 1.58510 2.21819 2.65120 2.74201 3.65329 3.71105 3.81976 3.97378 4.19836 4.35333 4.38145 4.39855 4.57557 4.71934 4.84236 4.89640 4.96087 4.99375 5.10708 5.25825 5.26763 5.31879 5.40874 5.62006 5.67565 5.94466 6.07481 6.27066 6.33798 6.58522 6.70952 6.88606 6.94387 7.20168 8.28261 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.054117 B = 0.005370 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.272381 B = 5212.462531 C = 5411.889927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.101 3.899 3 H 0.074 0.926 4 N -0.849 5.849 5 C 0.081 3.919 6 H 0.061 0.939 7 C -0.178 4.178 8 O -0.311 6.311 9 C -0.002 4.002 10 C -0.129 4.129 11 C -0.168 4.168 12 C 0.060 3.940 13 C -0.511 4.511 14 H 0.076 0.924 15 C 0.048 3.952 16 N -0.813 5.813 17 Si 0.971 3.029 18 H -0.260 1.260 19 H -0.265 1.265 20 H -0.260 1.260 21 C -0.217 4.217 22 C -0.160 4.160 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.041 0.959 26 H 0.350 0.650 27 H 0.346 0.654 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.291 0.709 34 H 0.101 0.899 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.186 8.878 -8.154 12.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.010 4.010 3 H 0.092 0.908 4 N -0.384 5.384 5 C 0.024 3.976 6 H 0.079 0.921 7 C -0.235 4.235 8 O -0.226 6.226 9 C -0.046 4.046 10 C -0.148 4.148 11 C -0.187 4.187 12 C 0.057 3.943 13 C -0.539 4.539 14 H 0.094 0.906 15 C -0.170 4.170 16 N -0.437 5.437 17 Si 0.792 3.208 18 H -0.184 1.184 19 H -0.190 1.190 20 H -0.183 1.183 21 C -0.236 4.236 22 C -0.179 4.179 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.061 0.939 26 H 0.164 0.836 27 H 0.161 0.839 28 H 0.108 0.892 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.122 0.878 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.480 8.087 -8.104 11.966 hybrid contribution 0.448 0.232 0.605 0.787 sum 3.927 8.319 -7.500 11.869 Atomic orbital electron populations 1.21747 0.94540 1.01791 1.02105 1.21369 0.95835 0.94759 0.89052 0.90843 1.58545 1.16836 1.59177 1.03824 1.22530 0.94575 0.82099 0.98430 0.92116 1.22367 0.95021 1.03342 1.02777 1.86012 1.82365 1.26904 1.27329 1.18647 1.06713 0.94086 0.85128 1.19925 1.03461 0.93956 0.97409 1.20655 1.06638 0.99665 0.91765 1.17865 0.91353 0.91444 0.93592 1.19625 1.20172 1.15221 0.98899 0.90584 1.26717 0.92450 1.00461 0.97348 1.69969 1.05834 1.30271 1.37659 0.85378 0.80042 0.77047 0.78375 1.18443 1.18964 1.18330 1.20728 1.10631 0.95480 0.96807 1.20707 1.04621 0.99952 0.92619 0.92319 0.90843 0.93944 0.83613 0.83862 0.89168 0.93313 0.91219 0.87809 0.88407 0.89876 0.88051 0.85649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 9.34 71.98 0.67 -2.90 16 2 C 0.10 2.36 3.27 44.92 0.15 2.51 16 3 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 4 N -0.85 -18.69 9.09 -168.69 -1.53 -20.22 16 5 C 0.08 2.43 2.05 30.60 0.06 2.49 16 6 H 0.06 1.88 6.42 -2.39 -0.02 1.86 16 7 C -0.18 -4.56 8.77 71.98 0.63 -3.93 16 8 O -0.31 -12.54 8.99 -89.90 -0.81 -13.35 16 9 C 0.00 -0.07 6.59 22.79 0.15 0.08 16 10 C -0.13 -6.54 9.92 22.11 0.22 -6.32 16 11 C -0.17 -9.26 8.74 22.48 0.20 -9.06 16 12 C 0.06 3.34 5.59 -21.28 -0.12 3.22 16 13 C -0.51 -28.32 8.95 23.40 0.21 -28.11 16 14 H 0.08 4.07 8.01 -2.91 -0.02 4.05 16 15 C 0.05 2.46 4.82 85.23 0.41 2.87 16 16 N -0.81 -43.46 11.62 21.82 0.25 -43.20 16 17 Si 0.97 38.63 29.66 68.60 2.03 40.66 16 18 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 19 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 20 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 21 C -0.22 -10.99 9.74 22.49 0.22 -10.77 16 22 C -0.16 -7.27 8.03 22.11 0.18 -7.10 16 23 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.04 1.33 7.68 -2.39 -0.02 1.31 16 26 H 0.35 5.86 9.04 -89.69 -0.81 5.05 16 27 H 0.35 6.79 7.03 -89.70 -0.63 6.16 16 28 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.05 1.46 6.63 -2.38 -0.02 1.45 16 30 H 0.07 1.72 6.57 -2.39 -0.02 1.70 16 31 H 0.10 4.95 8.06 -2.91 -0.02 4.92 16 32 H 0.10 5.55 6.40 -2.91 -0.02 5.53 16 33 H 0.29 13.91 8.30 -92.71 -0.77 13.15 16 34 H 0.10 4.81 8.06 -2.91 -0.02 4.78 16 35 H 0.13 4.80 5.33 -2.91 -0.02 4.79 16 Total: -1.00 -63.19 286.60 2.59 -60.60 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: -0.34 Total: 32.55 kcal Atomic # 6 Polarization: -60.01 SS G_CDS: 2.98 Total: -57.03 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: -1.28 Total: -63.43 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.81 Total: -13.35 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -63.19 2.59 -60.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403464504.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.486 kcal (2) G-P(sol) polarization free energy of solvation -63.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds