Wall clock time and date at job start Mon Mar 30 2020 03:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46955 * 2 1 4 4 N 1.46896 * 109.47459 * 120.00088 * 2 1 3 5 5 C 1.52999 * 109.46878 * 240.00103 * 2 1 3 6 6 H 1.09001 * 109.47036 * 300.00123 * 5 2 1 7 7 C 1.53004 * 109.47248 * 179.97438 * 5 2 1 8 8 O 1.42904 * 109.47041 * 59.99690 * 5 2 1 9 9 C 1.35681 * 116.99944 * 203.33089 * 8 5 2 10 10 C 1.39318 * 119.81316 * 355.19737 * 9 8 5 11 11 C 1.36444 * 120.17803 * 180.02562 * 10 9 8 12 12 C 1.40837 * 119.81236 * 0.02562 * 11 10 9 13 13 C 1.41212 * 120.17506 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00257 * 331.37101 * 13 12 11 15 15 C 1.39892 * 119.99669 * 151.37557 * 13 12 11 16 16 N 1.30881 * 120.00043 * 349.13056 * 15 13 12 17 17 Si 1.86806 * 119.99872 * 169.12799 * 15 13 12 18 18 H 1.48498 * 109.46810 * 59.99935 * 17 15 13 19 19 H 1.48502 * 109.46854 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46875 * 299.99998 * 17 15 13 21 21 C 1.40833 * 119.64412 * 0.25221 * 12 11 10 22 22 C 1.36443 * 119.80947 * 359.46716 * 21 12 11 23 23 H 1.09003 * 109.46691 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46945 * 299.99871 * 1 2 3 25 25 H 1.08998 * 109.47524 * 59.99833 * 1 2 3 26 26 H 1.00898 * 111.00141 * 296.04940 * 4 2 1 27 27 H 1.00901 * 111.00186 * 59.99707 * 4 2 1 28 28 H 1.08996 * 109.46798 * 300.00027 * 7 5 2 29 29 H 1.08996 * 109.46814 * 60.00099 * 7 5 2 30 30 H 1.09001 * 109.46810 * 179.97438 * 7 5 2 31 31 H 1.07990 * 119.91430 * 0.02662 * 10 9 8 32 32 H 1.07996 * 120.08864 * 179.97438 * 11 10 9 33 33 H 0.97007 * 119.99982 * 180.02562 * 16 15 13 34 34 H 1.07991 * 120.09657 * 179.72404 * 21 12 11 35 35 H 1.08001 * 119.90880 * 180.26883 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 2.0400 -0.7212 -1.2493 6 1 1.6766 -1.7489 -1.2493 7 6 3.5700 -0.7207 -1.2497 8 8 1.5635 -0.0476 -2.4160 9 6 1.4905 -0.7737 -3.5599 10 6 1.9657 -2.0831 -3.5806 11 6 1.8964 -2.8199 -4.7269 12 6 1.3432 -2.2528 -5.8913 13 6 1.2682 -3.0082 -7.0821 14 1 1.9925 -3.7858 -7.2748 15 6 0.2557 -2.7492 -8.0120 16 7 -0.7410 -1.9634 -7.6925 17 14 0.3265 -3.5248 -9.7100 18 1 0.3235 -5.0040 -9.5790 19 1 -0.8551 -3.0949 -10.5001 20 1 1.5676 -3.0915 -10.4007 21 6 0.8705 -0.9265 -5.8633 22 6 0.9419 -0.2052 -4.7073 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.7503 -0.1990 2.0372 27 1 1.6962 -1.6479 1.2227 28 1 3.9329 0.3070 -1.2499 29 1 3.9337 -1.2343 -0.3597 30 1 3.9332 -1.2350 -2.1395 31 1 2.3900 -2.5163 -2.6870 32 1 2.2656 -3.8347 -4.7415 33 1 -1.4432 -1.7841 -8.3373 34 1 0.4490 -0.4829 -6.7531 35 1 0.5759 0.8106 -4.6829 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403464506.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:22 Heat of formation + Delta-G solvation = -30.446860 kcal Electronic energy + Delta-G solvation = -16388.517612 eV Core-core repulsion = 13772.024947 eV Total energy + Delta-G solvation = -2616.492665 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.21791 -37.02150 -35.37466 -33.20883 -30.62457 -29.28575 -29.06534 -28.53790 -24.96174 -23.33357 -21.64853 -20.61958 -19.77107 -17.37348 -17.25964 -15.93823 -15.19651 -14.56319 -14.41285 -14.14423 -13.94120 -13.35717 -13.12029 -12.78402 -12.38061 -12.31278 -12.03815 -11.76143 -11.44847 -11.33131 -11.16772 -11.06081 -10.94100 -10.59047 -10.26187 -9.85867 -9.73612 -9.26736 -9.05201 -8.77030 -7.60910 -6.92186 -6.63978 -4.24368 2.82383 2.97867 3.10226 3.13256 3.23708 3.91811 3.99636 4.68814 4.71974 5.01568 5.12363 5.32380 5.56532 5.65722 5.71311 5.83443 5.98513 6.09664 6.16379 6.22976 6.23977 6.34062 6.55911 6.78104 7.01233 7.03636 7.16451 7.24030 7.33025 7.51768 7.60089 7.82937 8.04284 8.24815 8.50520 8.69842 8.94746 9.02381 10.30917 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.055522 B = 0.005236 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.181739 B = 5346.443925 C = 5556.717777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.093 3.907 3 H 0.086 0.914 4 N -0.839 5.839 5 C 0.097 3.903 6 H 0.061 0.939 7 C -0.167 4.167 8 O -0.323 6.323 9 C 0.003 3.997 10 C -0.172 4.172 11 C -0.193 4.193 12 C 0.086 3.914 13 C -0.465 4.465 14 H 0.074 0.926 15 C 0.073 3.927 16 N -0.810 5.810 17 Si 0.910 3.090 18 H -0.267 1.267 19 H -0.279 1.279 20 H -0.265 1.265 21 C -0.126 4.126 22 C -0.126 4.126 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.343 0.657 27 H 0.339 0.661 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.279 0.721 34 H 0.127 0.873 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.956 2.044 10.311 10.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.019 4.019 3 H 0.104 0.896 4 N -0.369 5.369 5 C 0.039 3.961 6 H 0.079 0.921 7 C -0.224 4.224 8 O -0.238 6.238 9 C -0.040 4.040 10 C -0.191 4.191 11 C -0.212 4.212 12 C 0.083 3.917 13 C -0.496 4.496 14 H 0.092 0.908 15 C -0.143 4.143 16 N -0.437 5.437 17 Si 0.735 3.265 18 H -0.192 1.192 19 H -0.204 1.204 20 H -0.190 1.190 21 C -0.146 4.146 22 C -0.145 4.145 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.092 0.908 26 H 0.156 0.844 27 H 0.152 0.848 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.145 0.855 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.418 2.474 9.921 10.507 hybrid contribution -1.095 -0.736 -0.482 1.405 sum 1.322 1.738 9.439 9.689 Atomic orbital electron populations 1.22548 0.97189 1.02094 1.02494 1.21326 0.92614 0.98598 0.89333 0.89604 1.58766 1.67473 1.06616 1.04086 1.21932 0.94091 0.95816 0.84262 0.92068 1.22226 0.95509 1.02404 1.02264 1.85817 1.82997 1.39027 1.16001 1.18599 1.07430 0.91886 0.86078 1.20476 1.05847 0.94355 0.98408 1.20637 1.09269 0.98464 0.92861 1.17596 0.90551 0.91484 0.92023 1.19410 1.11402 1.16942 1.01866 0.90764 1.25840 0.94237 0.94251 0.99935 1.69791 1.07906 1.30587 1.35425 0.86346 0.78502 0.80096 0.81564 1.19193 1.20446 1.19002 1.21022 1.02965 0.93990 0.96577 1.19862 1.03538 0.99228 0.91839 0.92861 0.93141 0.90827 0.84448 0.84833 0.92546 0.91014 0.92247 0.88486 0.88788 0.91051 0.85549 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 9.33 37.16 0.35 -1.99 16 2 C 0.09 1.21 3.15 -67.71 -0.21 0.99 16 3 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 4 N -0.84 -8.71 8.47 -4.67 -0.04 -8.75 16 5 C 0.10 1.57 1.97 -26.73 -0.05 1.52 16 6 H 0.06 1.03 6.36 -51.93 -0.33 0.70 16 7 C -0.17 -2.55 8.97 37.16 0.33 -2.22 16 8 O -0.32 -6.54 9.12 -18.74 -0.17 -6.71 16 9 C 0.00 0.08 6.61 -38.78 -0.26 -0.18 16 10 C -0.17 -3.92 8.10 -39.83 -0.32 -4.24 16 11 C -0.19 -4.78 9.74 -39.25 -0.38 -5.16 16 12 C 0.09 2.31 5.55 -106.80 -0.59 1.72 16 13 C -0.47 -12.51 9.05 -37.83 -0.34 -12.85 16 14 H 0.07 1.91 7.87 -52.49 -0.41 1.50 16 15 C 0.07 1.85 5.25 -17.34 -0.09 1.76 16 16 N -0.81 -21.29 10.85 55.54 0.60 -20.69 16 17 Si 0.91 19.02 29.57 -169.99 -5.03 13.99 16 18 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 19 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 C -0.13 -3.32 8.60 -39.25 -0.34 -3.66 16 22 C -0.13 -3.06 9.92 -39.83 -0.40 -3.46 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.07 1.09 7.68 -51.93 -0.40 0.69 16 26 H 0.34 2.83 9.07 -39.29 -0.36 2.47 16 27 H 0.34 3.26 9.00 -39.29 -0.35 2.90 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.98 7.60 -51.93 -0.39 0.58 16 30 H 0.06 0.99 6.75 -51.93 -0.35 0.64 16 31 H 0.10 1.95 5.35 -52.49 -0.28 1.67 16 32 H 0.09 2.19 8.06 -52.49 -0.42 1.76 16 33 H 0.28 6.71 8.30 -40.82 -0.34 6.38 16 34 H 0.13 3.42 6.23 -52.49 -0.33 3.09 16 35 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 288.47 15.07 4.35 4.35 Total: -1.00 -27.96 288.47 -7.47 -35.43 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -4.88 Total: 10.16 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: -2.31 Total: -27.78 kcal Atomic # 7 Polarization: -29.99 SS G_CDS: 0.56 Total: -29.43 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.17 Total: -6.71 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.96 -7.47 -35.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403464506.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.982 kcal (2) G-P(sol) polarization free energy of solvation -27.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds