Wall clock time and date at job start Mon Mar 30 2020 03:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46955 * 2 1 4 4 N 1.46896 * 109.47459 * 120.00088 * 2 1 3 5 5 C 1.52999 * 109.46878 * 240.00103 * 2 1 3 6 6 H 1.09001 * 109.47036 * 300.00123 * 5 2 1 7 7 C 1.53004 * 109.47248 * 179.97438 * 5 2 1 8 8 O 1.42904 * 109.47041 * 59.99690 * 5 2 1 9 9 C 1.35681 * 116.99944 * 203.33089 * 8 5 2 10 10 C 1.39318 * 119.81316 * 355.19737 * 9 8 5 11 11 C 1.36444 * 120.17803 * 180.02562 * 10 9 8 12 12 C 1.40837 * 119.81236 * 0.02562 * 11 10 9 13 13 C 1.41212 * 120.17506 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00257 * 331.37101 * 13 12 11 15 15 C 1.39892 * 119.99669 * 151.37557 * 13 12 11 16 16 N 1.30881 * 120.00043 * 349.13056 * 15 13 12 17 17 Si 1.86806 * 119.99872 * 169.12799 * 15 13 12 18 18 H 1.48498 * 109.46810 * 59.99935 * 17 15 13 19 19 H 1.48502 * 109.46854 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46875 * 299.99998 * 17 15 13 21 21 C 1.40833 * 119.64412 * 0.25221 * 12 11 10 22 22 C 1.36443 * 119.80947 * 359.46716 * 21 12 11 23 23 H 1.09003 * 109.46691 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46945 * 299.99871 * 1 2 3 25 25 H 1.08998 * 109.47524 * 59.99833 * 1 2 3 26 26 H 1.00898 * 111.00141 * 296.04940 * 4 2 1 27 27 H 1.00901 * 111.00186 * 59.99707 * 4 2 1 28 28 H 1.08996 * 109.46798 * 300.00027 * 7 5 2 29 29 H 1.08996 * 109.46814 * 60.00099 * 7 5 2 30 30 H 1.09001 * 109.46810 * 179.97438 * 7 5 2 31 31 H 1.07990 * 119.91430 * 0.02662 * 10 9 8 32 32 H 1.07996 * 120.08864 * 179.97438 * 11 10 9 33 33 H 0.97007 * 119.99982 * 180.02562 * 16 15 13 34 34 H 1.07991 * 120.09657 * 179.72404 * 21 12 11 35 35 H 1.08001 * 119.90880 * 180.26883 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 2.0400 -0.7212 -1.2493 6 1 1.6766 -1.7489 -1.2493 7 6 3.5700 -0.7207 -1.2497 8 8 1.5635 -0.0476 -2.4160 9 6 1.4905 -0.7737 -3.5599 10 6 1.9657 -2.0831 -3.5806 11 6 1.8964 -2.8199 -4.7269 12 6 1.3432 -2.2528 -5.8913 13 6 1.2682 -3.0082 -7.0821 14 1 1.9925 -3.7858 -7.2748 15 6 0.2557 -2.7492 -8.0120 16 7 -0.7410 -1.9634 -7.6925 17 14 0.3265 -3.5248 -9.7100 18 1 0.3235 -5.0040 -9.5790 19 1 -0.8551 -3.0949 -10.5001 20 1 1.5676 -3.0915 -10.4007 21 6 0.8705 -0.9265 -5.8633 22 6 0.9419 -0.2052 -4.7073 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.7503 -0.1990 2.0372 27 1 1.6962 -1.6479 1.2227 28 1 3.9329 0.3070 -1.2499 29 1 3.9337 -1.2343 -0.3597 30 1 3.9332 -1.2350 -2.1395 31 1 2.3900 -2.5163 -2.6870 32 1 2.2656 -3.8347 -4.7415 33 1 -1.4432 -1.7841 -8.3373 34 1 0.4490 -0.4829 -6.7531 35 1 0.5759 0.8106 -4.6829 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403464506.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:22 Heat of formation + Delta-G solvation = -47.608302 kcal Electronic energy + Delta-G solvation = -16389.261788 eV Core-core repulsion = 13772.024947 eV Total energy + Delta-G solvation = -2617.236841 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.84035 -38.67104 -36.72738 -35.07960 -32.14387 -31.00794 -30.84305 -29.58623 -26.82685 -24.64873 -23.31282 -22.46411 -21.16296 -19.23874 -18.87869 -17.20927 -17.03712 -15.97920 -15.80784 -15.71525 -15.42790 -14.72496 -14.64492 -14.11960 -14.05885 -13.85637 -13.53542 -13.35764 -13.00775 -12.86797 -12.75976 -12.53542 -12.46087 -12.18065 -11.70107 -11.57913 -11.43863 -11.09646 -10.90696 -9.66334 -9.54950 -8.83476 -8.53922 -6.24394 0.96349 1.03497 1.40162 1.51592 1.53873 2.24446 2.51302 2.77780 3.67411 3.71223 3.85926 4.01211 4.14253 4.31328 4.35414 4.42199 4.53258 4.77335 4.78497 4.89699 5.01813 5.05109 5.14300 5.21549 5.22712 5.31348 5.35605 5.61218 5.67515 5.89875 6.07130 6.17528 6.28637 6.58053 6.61276 6.83672 6.97492 7.11584 8.42699 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.055522 B = 0.005236 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.181739 B = 5346.443925 C = 5556.717777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.103 3.897 3 H 0.086 0.914 4 N -0.834 5.834 5 C 0.087 3.913 6 H 0.058 0.942 7 C -0.160 4.160 8 O -0.329 6.329 9 C 0.015 3.985 10 C -0.169 4.169 11 C -0.202 4.202 12 C 0.052 3.948 13 C -0.501 4.501 14 H 0.074 0.926 15 C 0.031 3.969 16 N -0.842 5.842 17 Si 0.984 3.016 18 H -0.261 1.261 19 H -0.269 1.269 20 H -0.261 1.261 21 C -0.144 4.144 22 C -0.139 4.139 23 H 0.051 0.949 24 H 0.075 0.925 25 H 0.047 0.953 26 H 0.359 0.641 27 H 0.346 0.654 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.041 0.959 31 H 0.126 0.874 32 H 0.104 0.896 33 H 0.285 0.715 34 H 0.111 0.889 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.350 1.744 11.628 11.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.009 4.009 3 H 0.104 0.896 4 N -0.367 5.367 5 C 0.030 3.970 6 H 0.076 0.924 7 C -0.218 4.218 8 O -0.244 6.244 9 C -0.029 4.029 10 C -0.187 4.187 11 C -0.222 4.222 12 C 0.050 3.950 13 C -0.532 4.532 14 H 0.093 0.907 15 C -0.182 4.182 16 N -0.470 5.470 17 Si 0.805 3.195 18 H -0.185 1.185 19 H -0.194 1.194 20 H -0.185 1.185 21 C -0.164 4.164 22 C -0.157 4.157 23 H 0.070 0.930 24 H 0.094 0.906 25 H 0.066 0.934 26 H 0.174 0.826 27 H 0.159 0.841 28 H 0.076 0.924 29 H 0.111 0.889 30 H 0.061 0.939 31 H 0.144 0.856 32 H 0.122 0.878 33 H 0.096 0.904 34 H 0.129 0.871 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.817 2.182 11.282 11.831 hybrid contribution -1.184 -0.587 -0.684 1.488 sum 1.632 1.594 10.598 10.841 Atomic orbital electron populations 1.22531 0.97005 1.01990 1.02521 1.21153 0.92617 0.98324 0.88798 0.89627 1.58701 1.67217 1.07051 1.03699 1.22303 0.94857 0.95927 0.83921 0.92425 1.22176 0.94583 1.02566 1.02429 1.85820 1.82983 1.39386 1.16222 1.18650 1.05644 0.91909 0.86743 1.20722 1.05102 0.94128 0.98780 1.20863 1.09120 0.99220 0.93000 1.17944 0.91829 0.92030 0.93169 1.19678 1.12499 1.17900 1.03129 0.90746 1.26707 0.93280 0.94542 1.03631 1.69863 1.08532 1.31650 1.36908 0.85223 0.78785 0.79219 0.76253 1.18519 1.19390 1.18550 1.20941 1.04207 0.94335 0.96902 1.20031 1.03859 0.99846 0.91998 0.93029 0.90560 0.93371 0.82646 0.84052 0.92413 0.88905 0.93939 0.85634 0.87768 0.90435 0.87133 0.87305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.22 9.33 71.98 0.67 -3.55 16 2 C 0.10 2.42 3.15 44.92 0.14 2.56 16 3 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 4 N -0.83 -14.52 8.47 -168.69 -1.43 -15.95 16 5 C 0.09 2.65 1.97 30.60 0.06 2.71 16 6 H 0.06 1.82 6.36 -2.39 -0.02 1.80 16 7 C -0.16 -4.55 8.97 71.98 0.65 -3.90 16 8 O -0.33 -12.95 9.12 -89.99 -0.82 -13.78 16 9 C 0.01 0.67 6.61 22.79 0.15 0.82 16 10 C -0.17 -7.57 8.10 22.11 0.18 -7.39 16 11 C -0.20 -10.12 9.74 22.49 0.22 -9.90 16 12 C 0.05 2.90 5.55 -21.28 -0.12 2.78 16 13 C -0.50 -27.64 9.05 23.40 0.21 -27.43 16 14 H 0.07 3.93 7.87 -2.91 -0.02 3.91 16 15 C 0.03 1.58 5.25 85.24 0.45 2.03 16 16 N -0.84 -45.28 10.85 21.82 0.24 -45.04 16 17 Si 0.98 39.17 29.57 68.60 2.03 41.20 16 18 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 19 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 20 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 21 C -0.14 -7.86 8.60 22.49 0.19 -7.67 16 22 C -0.14 -6.85 9.92 22.11 0.22 -6.64 16 23 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.05 1.37 7.68 -2.39 -0.02 1.35 16 26 H 0.36 4.60 9.07 -89.70 -0.81 3.79 16 27 H 0.35 5.49 9.00 -89.69 -0.81 4.68 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.09 2.24 7.60 -2.39 -0.02 2.22 16 30 H 0.04 1.34 6.75 -2.39 -0.02 1.32 16 31 H 0.13 4.83 5.35 -2.92 -0.02 4.81 16 32 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 33 H 0.29 13.96 8.30 -92.70 -0.77 13.19 16 34 H 0.11 6.27 6.23 -2.92 -0.02 6.25 16 35 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -60.61 288.47 2.52 -58.09 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: -0.52 Total: 31.06 kcal Atomic # 6 Polarization: -58.60 SS G_CDS: 3.02 Total: -55.58 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: -1.19 Total: -60.99 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.82 Total: -13.78 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.20 kcal Total: -60.61 2.52 -58.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403464506.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.482 kcal (2) G-P(sol) polarization free energy of solvation -60.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds