Wall clock time and date at job start Mon Mar 30 2020 03:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38394 * 120.00279 * 2 1 4 4 N 1.32128 * 119.99800 * 179.76787 * 3 2 1 5 5 C 1.32154 * 119.99760 * 0.50655 * 4 3 2 6 6 C 1.50697 * 119.99739 * 179.76989 * 5 4 3 7 7 H 1.08995 * 109.47458 * 214.35165 * 6 5 4 8 8 C 1.52997 * 109.47328 * 94.34965 * 6 5 4 9 9 N 1.46901 * 109.46933 * 334.35120 * 6 5 4 10 10 C 1.46897 * 110.99942 * 172.74798 * 9 6 5 11 11 C 1.46905 * 110.99781 * 296.69409 * 9 6 5 12 12 C 1.50700 * 109.46908 * 170.00127 * 11 9 6 13 13 H 1.07999 * 119.99973 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99942 * 180.02562 * 12 11 9 15 15 N 1.31518 * 120.00169 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00294 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47089 * 59.99484 * 16 14 12 18 18 H 1.48497 * 109.47287 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46810 * 299.99726 * 16 14 12 20 20 C 1.38344 * 120.00185 * 359.48936 * 5 4 3 21 21 N 1.32127 * 120.00193 * 180.02562 * 2 1 3 22 22 H 1.09003 * 109.47020 * 269.98180 * 1 2 3 23 23 H 1.08991 * 109.47123 * 29.97756 * 1 2 3 24 24 H 1.08997 * 109.47095 * 149.98391 * 1 2 3 25 25 H 1.08004 * 119.99883 * 0.02562 * 3 2 1 26 26 H 1.08999 * 109.47381 * 59.99736 * 8 6 5 27 27 H 1.08999 * 109.47402 * 180.02562 * 8 6 5 28 28 H 1.09001 * 109.47168 * 299.99784 * 8 6 5 29 29 H 1.09000 * 109.47012 * 177.36480 * 10 9 6 30 30 H 1.08996 * 109.47574 * 57.35990 * 10 9 6 31 31 H 1.08999 * 109.47030 * 297.36092 * 10 9 6 32 32 H 1.09001 * 109.47169 * 290.00313 * 11 9 6 33 33 H 1.09003 * 109.46804 * 50.00662 * 11 9 6 34 34 H 0.96991 * 120.00453 * 180.02562 * 15 14 12 35 35 H 1.07999 * 119.99483 * 180.27562 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1985 0.0000 4 7 3.5203 1.1984 0.0046 5 6 4.1809 0.0539 -0.0008 6 6 5.6879 0.0538 -0.0008 7 1 6.0513 -0.7918 -0.5847 8 6 6.1979 -0.0626 1.4370 9 7 6.1776 1.3052 -0.5943 10 6 7.6357 1.4180 -0.4562 11 6 5.7723 1.4141 -2.0021 12 6 6.0737 2.8021 -2.5056 13 1 6.5212 3.5306 -1.8457 14 6 5.7772 3.1423 -3.8084 15 7 5.2317 2.2554 -4.6119 16 14 6.1515 4.8626 -4.4329 17 1 7.6083 5.1256 -4.3161 18 1 5.7404 4.9732 -5.8556 19 1 5.4025 5.8569 -3.6232 20 6 3.4892 -1.1442 -0.0008 21 7 2.1677 -1.1442 -0.0005 22 1 -0.3633 -0.0003 1.0277 23 1 -0.3633 0.8901 -0.5134 24 1 -0.3633 -0.8898 -0.5141 25 1 1.6590 2.1339 0.0004 26 1 5.8345 -0.9910 1.8774 27 1 7.2879 -0.0622 1.4371 28 1 5.8347 0.7831 2.0209 29 1 7.9774 2.3305 -0.9448 30 1 8.1127 0.5558 -0.9222 31 1 7.8990 1.4516 0.6010 32 1 6.3226 0.6845 -2.5962 33 1 4.7030 1.2206 -2.0883 34 1 5.0235 2.4946 -5.5285 35 1 4.0292 -2.0795 -0.0007 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428226460.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:21 Heat of formation + Delta-G solvation = 29.194447 kcal Electronic energy + Delta-G solvation = -16711.221305 eV Core-core repulsion = 14129.607632 eV Total energy + Delta-G solvation = -2581.613673 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.11034 -38.81662 -35.41528 -34.82706 -33.85924 -31.89467 -29.40854 -28.08616 -26.91747 -25.53388 -24.26590 -23.27838 -21.14601 -18.68341 -18.50405 -17.41779 -16.78246 -16.66648 -16.22406 -15.86797 -15.26206 -15.11500 -14.45255 -13.91598 -13.77302 -13.61335 -13.36593 -13.24648 -13.10437 -12.80230 -12.73173 -12.46431 -12.37068 -12.35611 -12.10419 -11.98099 -11.65504 -11.28565 -10.60379 -9.90293 -9.82777 -8.93504 -8.19525 -6.28312 -0.13910 0.28370 1.38447 1.42419 1.50048 2.39748 2.76045 3.12310 3.15602 3.17735 3.36242 3.68206 3.82844 4.14977 4.28054 4.31286 4.39884 4.52191 4.56665 4.73276 4.78940 4.87986 4.89256 4.94862 5.08800 5.12947 5.17029 5.27996 5.39751 5.52871 5.65500 6.07728 6.37188 6.44011 6.66296 6.87606 7.00697 7.40361 8.91476 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.021964 B = 0.008202 C = 0.006514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.518855 B = 3412.828540 C = 4297.432330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.061 3.939 3 C 0.036 3.964 4 N -0.427 5.427 5 C 0.072 3.928 6 C 0.124 3.876 7 H 0.051 0.949 8 C -0.128 4.128 9 N -0.531 5.531 10 C 0.036 3.964 11 C 0.220 3.780 12 C -0.514 4.514 13 H 0.061 0.939 14 C -0.001 4.001 15 N -0.938 5.938 16 Si 0.968 3.032 17 H -0.265 1.265 18 H -0.284 1.284 19 H -0.270 1.270 20 C 0.047 3.953 21 N -0.457 5.457 22 H 0.100 0.900 23 H 0.095 0.905 24 H 0.078 0.922 25 H 0.183 0.817 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.014 0.986 31 H 0.087 0.913 32 H -0.050 1.050 33 H 0.001 0.999 34 H 0.262 0.738 35 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.524 -5.401 11.462 13.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 C -0.125 4.125 4 N -0.141 5.141 5 C -0.068 4.068 6 C 0.014 3.986 7 H 0.068 0.932 8 C -0.185 4.185 9 N -0.255 5.255 10 C -0.112 4.112 11 C 0.093 3.907 12 C -0.552 4.552 13 H 0.079 0.921 14 C -0.198 4.198 15 N -0.579 5.579 16 Si 0.793 3.207 17 H -0.190 1.190 18 H -0.209 1.209 19 H -0.195 1.195 20 C -0.112 4.112 21 N -0.172 5.172 22 H 0.118 0.882 23 H 0.113 0.887 24 H 0.097 0.903 25 H 0.200 0.800 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.105 0.895 32 H -0.032 1.032 33 H 0.020 0.980 34 H 0.071 0.929 35 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -4.780 -5.032 11.557 13.481 hybrid contribution 0.517 0.115 -1.380 1.478 sum -4.263 -4.917 10.178 12.080 Atomic orbital electron populations 1.20740 0.84952 1.04633 1.04595 1.22890 1.00195 0.89225 0.95642 1.24152 0.90598 1.00447 0.97263 1.68387 1.09033 1.30193 1.06444 1.22351 0.98033 0.89860 0.96523 1.20600 0.87828 0.91982 0.98200 0.93168 1.21814 1.02129 1.02506 0.92085 1.61972 1.12327 1.33000 1.18192 1.22317 0.86994 1.00216 1.01641 1.19241 0.93636 0.94914 0.82867 1.21413 1.39827 0.97987 0.96011 0.92089 1.25911 0.95148 1.01724 0.97055 1.70095 1.44549 1.36478 1.06811 0.85453 0.79046 0.79281 0.76941 1.18998 1.20900 1.19515 1.23776 0.90843 0.99503 0.97123 1.68328 1.08622 1.29899 1.10398 0.88206 0.88673 0.90278 0.79978 0.90091 0.90099 0.92751 0.92647 0.96726 0.89495 1.03235 0.98045 0.92924 0.79341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.79 10.19 71.24 0.73 -1.07 16 2 C 0.06 1.83 6.79 42.55 0.29 2.12 16 3 C 0.04 1.23 10.88 84.69 0.92 2.16 16 4 N -0.43 -17.60 8.97 -183.29 -1.64 -19.24 16 5 C 0.07 2.73 4.78 42.53 0.20 2.93 16 6 C 0.12 4.50 2.34 44.17 0.10 4.60 16 7 H 0.05 1.79 8.11 -2.39 -0.02 1.77 16 8 C -0.13 -3.43 8.70 71.98 0.63 -2.80 16 9 N -0.53 -23.69 4.27 -906.05 -3.87 -27.56 16 10 C 0.04 1.39 8.76 127.69 1.12 2.51 16 11 C 0.22 12.23 4.42 85.56 0.38 12.61 16 12 C -0.51 -30.29 8.42 25.60 0.22 -30.08 16 13 H 0.06 3.53 7.15 -2.91 -0.02 3.51 16 14 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 15 N -0.94 -58.51 13.29 21.45 0.28 -58.23 16 16 Si 0.97 45.70 29.54 68.60 2.03 47.73 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 18 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 20 C 0.05 1.53 10.90 84.67 0.92 2.46 16 21 N -0.46 -14.81 10.42 -183.29 -1.91 -16.72 16 22 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.09 1.54 8.09 -2.39 -0.02 1.52 16 24 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.18 5.08 8.06 -2.91 -0.02 5.06 16 26 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.08 1.90 6.38 -2.39 -0.02 1.89 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.05 2.34 6.70 -2.39 -0.02 2.33 16 30 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.09 2.67 6.37 -2.39 -0.02 2.66 16 32 H -0.05 -3.03 8.12 -2.39 -0.02 -3.05 16 33 H 0.00 0.09 6.33 -2.39 -0.02 0.08 16 34 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 35 H 0.19 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -73.41 291.84 1.92 -71.48 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 1.07 Total: 6.71 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 5.97 Total: -4.18 kcal Atomic # 7 Polarization: -114.61 SS G_CDS: -7.14 Total: -121.75 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -73.41 1.92 -71.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428226460.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.679 kcal (2) G-P(sol) polarization free energy of solvation -73.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds