Wall clock time and date at job start Mon Mar 30 2020 03:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00211 * 2 1 4 4 H 1.48503 * 109.46973 * 240.00022 * 3 2 1 5 5 H 1.48504 * 109.47007 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47422 * 119.99648 * 3 2 1 7 7 C 1.37879 * 119.99598 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99490 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00482 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47197 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.46728 * 179.97438 * 10 9 7 12 12 C 1.46908 * 110.99726 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46970 * 180.02562 * 12 11 10 14 14 C 1.39786 * 126.05429 * 260.02655 * 13 12 11 15 15 N 1.30703 * 108.20766 * 179.97438 * 14 13 12 16 16 N 1.40412 * 108.35078 * 359.92814 * 15 14 13 17 17 C 1.34902 * 107.69438 * 0.17094 * 16 15 14 18 18 C 1.51429 * 110.17370 * 179.81441 * 17 16 15 19 19 C 1.54550 * 104.19443 * 343.47762 * 18 17 16 20 20 C 1.47145 * 141.40479 * 180.35251 * 16 15 14 21 21 H 0.96992 * 119.99888 * 0.02562 * 1 2 3 22 22 H 1.08993 * 109.46716 * 59.99783 * 9 7 2 23 23 H 1.09007 * 109.46600 * 300.00216 * 9 7 2 24 24 H 1.09002 * 109.46949 * 60.00084 * 10 9 7 25 25 H 1.08996 * 109.46924 * 300.00014 * 10 9 7 26 26 H 1.00896 * 111.00392 * 303.95567 * 11 10 9 27 27 H 1.09004 * 109.46605 * 60.00200 * 12 11 10 28 28 H 1.08997 * 109.47277 * 300.00471 * 12 11 10 29 29 H 1.07999 * 125.89281 * 359.90525 * 14 13 12 30 30 H 1.09002 * 110.48644 * 224.80296 * 18 17 16 31 31 H 1.08992 * 110.48473 * 102.15403 * 18 17 16 32 32 H 1.09006 * 110.97751 * 267.02232 * 19 18 17 33 33 H 1.09009 * 111.00581 * 143.26921 * 19 18 17 34 34 H 1.09002 * 110.22936 * 77.89422 * 20 16 15 35 35 H 1.09000 * 110.22564 * 316.02540 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6622 0.0018 11 7 1.5107 -4.9343 0.0024 12 6 2.4352 -6.0760 0.0031 13 6 1.6471 -7.3605 0.0031 14 6 1.3832 -8.1638 1.1162 15 7 0.6731 -9.1878 0.7217 16 7 0.4582 -9.0704 -0.6609 17 6 1.0691 -7.9417 -1.0764 18 6 0.8757 -7.7618 -2.5675 19 6 0.4244 -9.1548 -3.0619 20 6 -0.2013 -9.7545 -1.7844 21 1 -0.4849 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8904 24 1 2.8712 -3.6040 0.8923 25 1 2.8726 -3.6048 -0.8877 26 1 0.8739 -4.9838 0.7835 27 1 3.0631 -6.0345 0.8931 28 1 3.0633 -6.0354 -0.8868 29 1 1.7106 -7.9721 2.1273 30 1 1.8140 -7.4742 -3.0419 31 1 0.1036 -7.0183 -2.7650 32 1 1.2777 -9.7467 -3.3932 33 1 -0.3179 -9.0663 -3.8553 34 1 -1.2742 -9.5631 -1.7646 35 1 -0.0092 -10.8264 -1.7380 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594945544.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:10 Heat of formation + Delta-G solvation = 77.440317 kcal Electronic energy + Delta-G solvation = -15855.025883 eV Core-core repulsion = 13275.504308 eV Total energy + Delta-G solvation = -2579.521575 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.63483 -36.56676 -35.66015 -33.03816 -31.31740 -29.48512 -29.05875 -27.18083 -24.55728 -22.83501 -22.23411 -20.63812 -20.48205 -19.24043 -16.65474 -16.23723 -15.58555 -15.14393 -14.40950 -14.35245 -14.08401 -13.90054 -13.58278 -13.15976 -13.02850 -12.41458 -12.06605 -11.86776 -11.72831 -11.69131 -11.35646 -11.01584 -10.87562 -10.53921 -10.37245 -9.92328 -9.35939 -9.14279 -9.12813 -8.31184 -8.23198 -7.66387 -5.95807 -3.98264 1.94501 2.33283 2.85622 3.35983 3.40172 3.42651 3.97137 4.42614 4.48089 4.50273 4.69187 4.96173 5.08154 5.24186 5.26687 5.35872 5.39952 5.56911 5.57506 5.67876 5.79314 5.95873 6.02853 6.33802 6.42467 6.52999 6.77659 6.88048 7.05287 7.58721 7.80653 7.85704 7.89721 8.06163 8.15952 8.48847 9.09166 9.65214 11.15644 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.044494 B = 0.004192 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.148989 B = 6678.444112 C = 6930.082967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.066 3.934 11 N -0.688 5.688 12 C 0.137 3.863 13 C -0.216 4.216 14 C 0.054 3.946 15 N -0.283 5.283 16 N -0.400 5.400 17 C 0.085 3.915 18 C -0.065 4.065 19 C -0.133 4.133 20 C 0.132 3.868 21 H 0.261 0.739 22 H 0.024 0.976 23 H 0.013 0.987 24 H 0.014 0.986 25 H 0.057 0.943 26 H 0.336 0.664 27 H 0.029 0.971 28 H 0.069 0.931 29 H 0.186 0.814 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.552 -18.733 -4.933 19.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.063 4.063 11 N -0.319 5.319 12 C 0.006 3.994 13 C -0.228 4.228 14 C -0.131 4.131 15 N -0.103 5.103 16 N -0.183 5.183 17 C -0.044 4.044 18 C -0.104 4.104 19 C -0.171 4.171 20 C 0.011 3.989 21 H 0.070 0.930 22 H 0.043 0.957 23 H 0.031 0.969 24 H 0.033 0.967 25 H 0.076 0.924 26 H 0.153 0.847 27 H 0.047 0.953 28 H 0.088 0.912 29 H 0.202 0.798 30 H 0.112 0.888 31 H 0.119 0.881 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.104 0.896 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.602 -19.918 -5.227 20.601 hybrid contribution 1.112 1.706 0.842 2.204 sum 1.715 -18.212 -4.384 18.811 Atomic orbital electron populations 1.69966 1.06039 1.26638 1.50701 1.25001 0.94824 0.99170 0.95354 0.86656 0.79562 0.83164 0.78582 1.20238 1.21307 1.20297 1.21164 0.92954 0.91077 1.50821 0.92812 1.19058 0.94043 0.90435 0.97647 1.22153 0.96952 0.88626 0.98535 1.60629 1.19713 1.01681 1.49899 1.20102 0.92707 0.86463 1.00085 1.19318 1.11151 1.01256 0.91039 1.23811 0.97445 0.92279 0.99612 1.77263 1.22144 1.23597 0.87305 1.50053 1.42043 1.20489 1.05706 1.21958 0.96677 0.89728 0.96021 1.20853 1.03983 0.97307 0.88252 1.22813 1.01938 0.96254 0.96128 1.22253 0.97297 0.97676 0.81660 0.92983 0.95741 0.96875 0.96749 0.92448 0.84688 0.95260 0.91248 0.79761 0.88781 0.88136 0.89726 0.88151 0.89592 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.24 13.29 55.43 0.74 -26.51 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.03 0.68 5.23 -27.88 -0.15 0.53 16 10 C 0.07 1.40 5.62 -3.82 -0.02 1.38 16 11 N -0.69 -12.76 6.49 -115.05 -0.75 -13.51 16 12 C 0.14 2.11 6.17 -4.97 -0.03 2.08 16 13 C -0.22 -3.22 5.62 -105.01 -0.59 -3.81 16 14 C 0.05 0.78 11.95 -17.45 -0.21 0.57 16 15 N -0.28 -4.37 12.69 30.58 0.39 -3.98 16 16 N -0.40 -5.43 4.86 -55.67 -0.27 -5.70 16 17 C 0.09 1.17 7.41 -81.85 -0.61 0.57 16 18 C -0.07 -0.66 6.86 -26.71 -0.18 -0.84 16 19 C -0.13 -0.90 7.17 -25.20 -0.18 -1.08 16 20 C 0.13 1.16 7.77 -2.97 -0.02 1.14 16 21 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 22 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.01 0.36 8.14 -51.92 -0.42 -0.06 16 24 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.34 6.25 8.72 -39.29 -0.34 5.90 16 27 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.19 2.10 8.06 -52.49 -0.42 1.68 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.10 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 297.10 15.07 4.48 4.48 Total: -1.00 -33.39 297.10 -8.22 -41.61 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -5.38 Total: -0.03 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -2.40 Total: -13.15 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: 0.11 Total: -49.69 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.39 -8.22 -41.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594945544.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.048 kcal (2) G-P(sol) polarization free energy of solvation -33.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds