Wall clock time and date at job start Mon Mar 30 2020 02:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47322 * 2 1 4 4 O 1.42897 * 109.47090 * 239.99824 * 2 1 3 5 5 C 1.53006 * 109.47137 * 120.00065 * 2 1 3 6 6 H 1.08999 * 109.46554 * 299.80825 * 5 2 1 7 7 N 1.46897 * 109.47206 * 59.80992 * 5 2 1 8 8 C 1.46899 * 110.99828 * 201.45103 * 7 5 2 9 9 C 1.50702 * 109.46921 * 177.43006 * 8 7 5 10 10 H 1.07995 * 119.99983 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99793 * 179.97438 * 9 8 7 12 12 N 1.31520 * 120.00228 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99984 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47203 * 89.99663 * 13 11 9 15 15 H 1.48500 * 109.47071 * 209.99963 * 13 11 9 16 16 H 1.48497 * 109.46973 * 329.99853 * 13 11 9 17 17 C 1.50697 * 109.46976 * 179.81217 * 5 2 1 18 18 C 1.38239 * 120.00135 * 279.72443 * 17 5 2 19 19 C 1.38228 * 120.00203 * 179.81344 * 18 17 5 20 20 C 1.38237 * 120.00136 * 0.39283 * 19 18 17 21 21 C 1.38239 * 119.99771 * 359.86032 * 20 19 18 22 22 C 1.38235 * 119.99980 * 99.99912 * 17 5 2 23 23 H 1.08997 * 109.46908 * 173.81344 * 1 2 3 24 24 H 1.08997 * 109.46985 * 293.81041 * 1 2 3 25 25 H 1.08994 * 109.47039 * 53.81314 * 1 2 3 26 26 H 0.96706 * 114.00258 * 299.99559 * 4 2 1 27 27 H 1.00896 * 110.99763 * 325.40425 * 7 5 2 28 28 H 1.09001 * 109.47038 * 297.43014 * 8 7 5 29 29 H 1.09004 * 109.47355 * 57.42869 * 8 7 5 30 30 H 0.96998 * 119.99941 * 180.02562 * 12 11 9 31 31 H 1.08001 * 119.99710 * 359.97438 * 18 17 5 32 32 H 1.07998 * 120.00118 * 180.22785 * 19 18 17 33 33 H 1.08001 * 120.00285 * 179.83340 * 20 19 18 34 34 H 1.08004 * 119.99829 * 179.97438 * 21 20 19 35 35 H 1.07999 * 120.00243 * 359.97438 * 22 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0400 -0.7213 1.2493 6 1 1.6795 -0.2054 2.1392 7 7 1.5467 -2.1049 1.2516 8 6 1.5640 -2.6677 2.6084 9 6 0.9935 -4.0623 2.5810 10 1 0.6526 -4.4881 1.6489 11 6 0.9078 -4.7950 3.7458 12 7 1.3234 -4.2767 4.8809 13 14 0.2013 -6.5240 3.7119 14 1 1.2938 -7.5005 3.4709 15 1 -0.4480 -6.8190 5.0144 16 1 -0.8035 -6.6268 2.6233 17 6 3.5470 -0.7253 1.2469 18 6 4.2346 -1.6487 0.4817 19 6 5.6168 -1.6499 0.4765 20 6 6.3117 -0.7330 1.2429 21 6 5.6242 0.1871 2.0121 22 6 4.2418 0.1908 2.0143 23 1 -0.3633 -1.0217 -0.1107 24 1 -0.3633 0.4149 0.9402 25 1 -0.3633 0.6067 -0.8294 26 1 1.7211 -1.5953 -1.2328 27 1 0.6231 -2.1601 0.8490 28 1 2.5902 -2.7020 2.9744 29 1 0.9634 -2.0423 3.2689 30 1 1.2635 -4.7923 5.7003 31 1 3.6917 -2.3676 -0.1141 32 1 6.1540 -2.3690 -0.1241 33 1 7.3917 -0.7356 1.2409 34 1 6.1671 0.9033 2.6112 35 1 3.7047 0.9096 2.6153 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596066479.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:12 Heat of formation + Delta-G solvation = -53.007005 kcal Electronic energy + Delta-G solvation = -16682.265872 eV Core-core repulsion = 14064.794926 eV Total energy + Delta-G solvation = -2617.470946 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.62840 -38.62244 -36.31071 -34.57832 -32.24007 -31.60447 -31.42621 -28.57901 -26.40539 -23.91659 -23.21109 -22.96407 -21.17152 -18.76262 -17.91259 -17.18295 -16.95567 -16.45067 -15.97438 -15.92228 -15.51777 -14.87971 -14.37426 -14.31489 -14.04184 -13.92656 -13.50967 -13.30628 -13.03300 -12.78255 -12.73895 -12.52446 -12.12223 -11.95876 -11.80897 -11.75413 -11.21073 -10.86714 -10.67454 -9.66687 -9.43384 -9.20634 -8.22593 -6.33791 0.57527 0.68051 1.40788 1.42433 1.53172 2.38990 3.01029 3.11335 3.30309 3.71385 3.85793 3.95771 4.16194 4.26543 4.30365 4.35890 4.41819 4.59543 4.77758 4.84599 4.87787 5.03696 5.10305 5.21660 5.26208 5.29574 5.33172 5.58839 5.66455 5.74029 5.88549 6.03590 6.26749 6.39644 6.68820 6.85548 6.89571 7.37285 8.88994 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.021261 B = 0.007710 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.651920 B = 3630.933182 C = 4353.836109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.120 3.880 3 H 0.104 0.896 4 O -0.563 6.563 5 C 0.089 3.911 6 H 0.036 0.964 7 N -0.671 5.671 8 C 0.220 3.780 9 C -0.533 4.533 10 H 0.069 0.931 11 C 0.001 3.999 12 N -0.934 5.934 13 Si 0.971 3.029 14 H -0.276 1.276 15 H -0.284 1.284 16 H -0.260 1.260 17 C -0.078 4.078 18 C -0.087 4.087 19 C -0.141 4.141 20 C -0.132 4.132 21 C -0.133 4.133 22 C -0.140 4.140 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.081 0.919 26 H 0.384 0.616 27 H 0.339 0.661 28 H -0.008 1.008 29 H -0.042 1.042 30 H 0.264 0.736 31 H 0.119 0.881 32 H 0.134 0.866 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.495 8.506 -8.967 12.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.060 3.940 3 H 0.122 0.878 4 O -0.369 6.369 5 C -0.022 4.022 6 H 0.054 0.946 7 N -0.304 5.304 8 C 0.092 3.908 9 C -0.571 4.571 10 H 0.087 0.913 11 C -0.197 4.197 12 N -0.574 5.574 13 Si 0.796 3.204 14 H -0.202 1.202 15 H -0.209 1.209 16 H -0.184 1.184 17 C -0.079 4.079 18 C -0.105 4.105 19 C -0.159 4.159 20 C -0.150 4.150 21 C -0.151 4.151 22 C -0.159 4.159 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.100 0.900 26 H 0.233 0.767 27 H 0.159 0.841 28 H 0.010 0.990 29 H -0.025 1.025 30 H 0.072 0.928 31 H 0.137 0.863 32 H 0.152 0.848 33 H 0.162 0.838 34 H 0.160 0.840 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.365 8.780 -9.079 13.363 hybrid contribution -1.308 -0.937 1.223 2.021 sum 3.056 7.843 -7.855 11.514 Atomic orbital electron populations 1.22506 0.95171 1.03189 1.03292 1.21911 0.93356 0.95833 0.82862 0.87794 1.86461 1.77715 1.29942 1.42817 1.21197 0.92127 0.90548 0.98307 0.94585 1.60506 1.30235 1.16555 1.23146 1.19085 0.93911 0.93389 0.84377 1.21547 1.40866 1.00258 0.94445 0.91328 1.25948 0.95872 1.02967 0.94951 1.70108 1.48455 1.39328 0.99544 0.85355 0.78614 0.78799 0.77664 1.20151 1.20925 1.18382 1.19856 0.94948 0.96121 0.96996 1.21044 0.94196 0.97310 0.97970 1.21457 0.94257 0.99768 1.00425 1.21413 1.00850 0.95650 0.97074 1.21330 0.93760 0.99982 0.99982 1.21247 0.95373 0.99666 0.99609 0.91826 0.91690 0.89989 0.76723 0.84117 0.98956 1.02471 0.92760 0.86262 0.84776 0.83847 0.84021 0.85957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.38 9.12 71.98 0.66 -3.72 16 2 C 0.12 3.34 3.40 30.60 0.10 3.45 16 3 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 4 O -0.56 -16.27 12.00 -148.98 -1.79 -18.06 16 5 C 0.09 3.12 2.12 44.17 0.09 3.21 16 6 H 0.04 1.36 7.68 -2.39 -0.02 1.34 16 7 N -0.67 -27.14 4.96 -499.46 -2.48 -29.62 16 8 C 0.22 11.66 5.26 85.56 0.45 12.10 16 9 C -0.53 -29.81 9.29 25.60 0.24 -29.58 16 10 H 0.07 3.66 7.81 -2.91 -0.02 3.64 16 11 C 0.00 0.05 5.46 84.65 0.46 0.51 16 12 N -0.93 -56.73 13.29 21.45 0.28 -56.45 16 13 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 14 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 15 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 16 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 17 C -0.08 -2.84 4.49 -19.87 -0.09 -2.93 16 18 C -0.09 -3.11 8.45 22.27 0.19 -2.92 16 19 C -0.14 -4.40 10.05 22.27 0.22 -4.17 16 20 C -0.13 -3.70 10.05 22.27 0.22 -3.47 16 21 C -0.13 -3.82 10.05 22.27 0.22 -3.59 16 22 C -0.14 -4.63 9.67 22.27 0.22 -4.41 16 23 H 0.06 1.55 6.50 -2.39 -0.02 1.54 16 24 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.38 10.18 8.48 -74.05 -0.63 9.56 16 27 H 0.34 12.57 6.26 -89.70 -0.56 12.00 16 28 H -0.01 -0.46 7.92 -2.39 -0.02 -0.48 16 29 H -0.04 -2.44 8.00 -2.38 -0.02 -2.45 16 30 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 31 H 0.12 4.37 7.45 -2.91 -0.02 4.35 16 32 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 33 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 35 H 0.12 3.63 8.04 -2.91 -0.02 3.61 16 Total: -1.00 -65.48 293.55 0.93 -64.56 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: -0.11 Total: 29.07 kcal Atomic # 6 Polarization: -38.51 SS G_CDS: 2.99 Total: -35.52 kcal Atomic # 7 Polarization: -83.88 SS G_CDS: -2.19 Total: -86.07 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -1.79 Total: -18.06 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -65.48 0.93 -64.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596066479.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.550 kcal (2) G-P(sol) polarization free energy of solvation -65.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds