Wall clock time and date at job start Mon Mar 30 2020 03:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99736 * 2 1 4 4 H 1.48506 * 109.46809 * 239.99482 * 3 2 1 5 5 H 1.48488 * 109.47198 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46868 * 120.00004 * 3 2 1 7 7 C 1.37882 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99564 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00130 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47157 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47156 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47072 * 179.97438 * 11 10 9 13 13 C 1.47041 * 111.00093 * 170.41283 * 12 11 10 14 14 C 1.53150 * 109.73248 * 72.65454 * 13 12 11 15 15 C 1.53599 * 108.84774 * 67.74533 * 14 13 12 16 16 N 1.46616 * 107.71654 * 313.67691 * 15 14 13 17 17 C 1.36956 * 128.07531 * 194.98863 * 16 15 14 18 18 C 1.34594 * 106.72871 * 179.97438 * 17 16 15 19 19 N 1.34543 * 108.36434 * 0.02562 * 18 17 16 20 20 C 1.30919 * 109.32322 * 0.02562 * 19 18 17 21 21 H 0.96995 * 120.00164 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46872 * 59.99816 * 9 7 2 23 23 H 1.08999 * 109.47503 * 299.99736 * 9 7 2 24 24 H 1.08992 * 109.46998 * 60.00057 * 10 9 7 25 25 H 1.08999 * 109.46805 * 300.00294 * 10 9 7 26 26 H 1.09008 * 109.47274 * 60.00382 * 11 10 9 27 27 H 1.08997 * 109.47535 * 300.00459 * 11 10 9 28 28 H 1.08997 * 109.43596 * 192.71109 * 13 12 11 29 29 H 1.09001 * 109.42994 * 312.60770 * 13 12 11 30 30 H 1.09001 * 109.55035 * 307.94686 * 14 13 12 31 31 H 1.09006 * 109.58767 * 187.56387 * 14 13 12 32 32 H 1.09003 * 109.81033 * 194.12329 * 15 14 13 33 33 H 1.09000 * 109.81363 * 73.23486 * 15 14 13 34 34 H 1.07999 * 126.63491 * 359.95284 * 17 16 15 35 35 H 1.07998 * 125.81497 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0006 13 6 1.7488 -7.3837 0.2298 14 6 0.9562 -7.7766 -1.0204 15 6 1.9430 -8.1052 -2.1507 16 7 2.9534 -7.0434 -2.1834 17 6 3.8512 -6.7622 -3.1787 18 6 4.5714 -5.7038 -2.7633 19 7 4.1299 -5.3426 -1.5447 20 6 3.1570 -6.1403 -1.1825 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5570 -0.8897 23 1 0.6241 -2.5568 0.8903 24 1 2.8720 -3.6043 0.8905 25 1 2.8720 -3.6043 -0.8894 26 1 0.8534 -5.0451 -0.8887 27 1 0.8540 -5.0446 0.8913 28 1 2.4859 -8.1562 0.4488 29 1 1.0668 -7.2835 1.0742 30 1 0.3173 -6.9469 -1.3230 31 1 0.3435 -8.6520 -0.8045 32 1 1.4146 -8.1418 -3.1033 33 1 2.4217 -9.0649 -1.9558 34 1 3.9605 -7.2883 -4.1156 35 1 5.3684 -5.2263 -3.3138 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685978236.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:15 Heat of formation + Delta-G solvation = 68.933045 kcal Electronic energy + Delta-G solvation = -16675.777908 eV Core-core repulsion = 14095.887430 eV Total energy + Delta-G solvation = -2579.890478 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.11444 -37.94581 -35.10568 -33.34918 -31.35136 -30.30735 -28.72269 -26.94897 -24.86216 -22.91283 -22.67860 -21.15331 -20.16084 -18.56650 -17.19823 -16.23298 -15.94352 -15.42603 -15.06455 -14.58582 -14.31945 -14.12770 -13.62707 -13.22855 -13.01521 -12.52842 -12.20075 -11.72432 -11.61765 -11.49009 -11.19770 -10.74062 -10.55333 -10.46166 -9.74242 -9.52121 -9.43135 -9.24676 -8.97690 -8.90636 -8.22804 -7.70923 -5.89223 -3.89653 2.17281 2.75138 3.37805 3.42989 3.45454 3.50112 3.71859 4.22356 4.45106 4.56940 4.72211 4.90703 4.98146 5.14697 5.20868 5.42228 5.46801 5.55626 5.62424 5.67269 5.83545 5.90079 6.24746 6.31402 6.54240 6.71724 6.90583 7.02684 7.24057 7.37347 7.71354 7.82857 7.96340 8.12832 8.44630 8.57883 9.17426 9.73588 11.22572 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.034513 B = 0.005915 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.092112 B = 4732.250305 C = 5221.924789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.512 4.512 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.109 4.109 11 C 0.061 3.939 12 N -0.447 5.447 13 C 0.048 3.952 14 C -0.175 4.175 15 C 0.106 3.894 16 N -0.490 5.490 17 C -0.066 4.066 18 C -0.019 4.019 19 N -0.468 5.468 20 C 0.394 3.606 21 H 0.259 0.741 22 H 0.010 0.990 23 H 0.013 0.987 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.171 0.829 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.124 -19.215 -4.557 19.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.550 4.550 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.147 4.147 11 C -0.064 4.064 12 N -0.169 5.169 13 C -0.080 4.080 14 C -0.214 4.214 15 C -0.017 4.017 16 N -0.181 5.181 17 C -0.198 4.198 18 C -0.167 4.167 19 N -0.189 5.189 20 C 0.043 3.957 21 H 0.069 0.931 22 H 0.028 0.972 23 H 0.032 0.968 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.052 0.948 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.115 0.885 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.188 0.812 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 2.510 -18.465 -3.691 18.997 hybrid contribution -0.465 0.008 -1.229 1.314 sum 2.045 -18.456 -4.920 19.210 Atomic orbital electron populations 1.69961 1.06053 1.26500 1.51570 1.25022 0.94834 0.99198 0.95534 0.86652 0.79549 0.83085 0.78699 1.20258 1.21430 1.20195 1.21239 0.93207 0.90902 1.49650 0.92525 1.19052 0.93931 0.91634 0.96667 1.21749 0.98996 0.91213 1.02738 1.22521 0.92707 0.90568 1.00638 1.59392 1.26626 1.04951 1.25906 1.22350 0.97574 0.90693 0.97390 1.22569 0.98540 1.04125 0.96182 1.21977 0.89017 0.89828 1.00828 1.46228 1.28827 1.27694 1.15315 1.22332 0.98227 1.03746 0.95468 1.22333 1.03003 0.97464 0.93939 1.70512 1.10250 1.24708 1.13396 1.21482 0.97169 0.90197 0.86886 0.93142 0.97178 0.96843 0.92463 0.91169 0.94761 0.89944 0.89961 0.88457 0.90048 0.88602 0.89347 0.89973 0.81214 0.81300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.00 13.29 55.43 0.74 -27.27 16 2 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.68 29.54 -169.99 -5.02 17.66 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.51 -15.39 9.11 -34.44 -0.31 -15.70 16 8 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 9 C 0.02 0.68 4.97 -27.89 -0.14 0.54 16 10 C -0.11 -2.52 5.03 -26.73 -0.13 -2.66 16 11 C 0.06 1.13 4.58 -3.83 -0.02 1.11 16 12 N -0.45 -7.39 4.84 -174.40 -0.84 -8.23 16 13 C 0.05 0.55 5.76 -3.67 -0.02 0.52 16 14 C -0.17 -1.61 6.02 -26.34 -0.16 -1.77 16 15 C 0.11 1.00 7.13 -3.67 -0.03 0.97 16 16 N -0.49 -6.82 3.18 -117.16 -0.37 -7.19 16 17 C -0.07 -0.87 11.68 -16.55 -0.19 -1.06 16 18 C -0.02 -0.30 11.85 -17.65 -0.21 -0.51 16 19 N -0.47 -9.19 9.47 -13.78 -0.13 -9.32 16 20 C 0.39 6.90 6.58 -319.32 -2.10 4.80 16 21 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 22 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 25 H 0.07 1.74 6.17 -51.93 -0.32 1.42 16 26 H 0.03 0.63 6.97 -51.92 -0.36 0.27 16 27 H 0.08 1.39 7.91 -51.93 -0.41 0.98 16 28 H 0.08 0.86 8.13 -51.93 -0.42 0.44 16 29 H 0.10 0.95 7.88 -51.93 -0.41 0.54 16 30 H 0.08 0.89 6.76 -51.93 -0.35 0.54 16 31 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.17 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.17 2.20 8.06 -52.49 -0.42 1.77 16 LS Contribution 284.63 15.07 4.29 4.29 Total: -1.00 -35.15 284.63 -9.95 -45.10 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -5.20 Total: -2.82 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -3.41 Total: -12.22 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: -0.61 Total: -52.01 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -35.15 -9.95 -45.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685978236.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.038 kcal (2) G-P(sol) polarization free energy of solvation -35.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds