Wall clock time and date at job start Mon Mar 30 2020 03:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99736 * 2 1 4 4 H 1.48506 * 109.46809 * 239.99482 * 3 2 1 5 5 H 1.48488 * 109.47198 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46868 * 120.00004 * 3 2 1 7 7 C 1.37882 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99564 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00130 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47157 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47156 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47072 * 179.97438 * 11 10 9 13 13 C 1.47041 * 111.00093 * 170.41283 * 12 11 10 14 14 C 1.53150 * 109.73248 * 72.65454 * 13 12 11 15 15 C 1.53599 * 108.84774 * 67.74533 * 14 13 12 16 16 N 1.46616 * 107.71654 * 313.67691 * 15 14 13 17 17 C 1.36956 * 128.07531 * 194.98863 * 16 15 14 18 18 C 1.34594 * 106.72871 * 179.97438 * 17 16 15 19 19 N 1.34543 * 108.36434 * 0.02562 * 18 17 16 20 20 C 1.30919 * 109.32322 * 0.02562 * 19 18 17 21 21 H 0.96995 * 120.00164 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46872 * 59.99816 * 9 7 2 23 23 H 1.08999 * 109.47503 * 299.99736 * 9 7 2 24 24 H 1.08992 * 109.46998 * 60.00057 * 10 9 7 25 25 H 1.08999 * 109.46805 * 300.00294 * 10 9 7 26 26 H 1.09008 * 109.47274 * 60.00382 * 11 10 9 27 27 H 1.08997 * 109.47535 * 300.00459 * 11 10 9 28 28 H 1.08997 * 109.43596 * 192.71109 * 13 12 11 29 29 H 1.09001 * 109.42994 * 312.60770 * 13 12 11 30 30 H 1.09001 * 109.55035 * 307.94686 * 14 13 12 31 31 H 1.09006 * 109.58767 * 187.56387 * 14 13 12 32 32 H 1.09003 * 109.81033 * 194.12329 * 15 14 13 33 33 H 1.09000 * 109.81363 * 73.23486 * 15 14 13 34 34 H 1.07999 * 126.63491 * 359.95284 * 17 16 15 35 35 H 1.07998 * 125.81497 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0006 13 6 1.7488 -7.3837 0.2298 14 6 0.9562 -7.7766 -1.0204 15 6 1.9430 -8.1052 -2.1507 16 7 2.9534 -7.0434 -2.1834 17 6 3.8512 -6.7622 -3.1787 18 6 4.5714 -5.7038 -2.7633 19 7 4.1299 -5.3426 -1.5447 20 6 3.1570 -6.1403 -1.1825 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5570 -0.8897 23 1 0.6241 -2.5568 0.8903 24 1 2.8720 -3.6043 0.8905 25 1 2.8720 -3.6043 -0.8894 26 1 0.8534 -5.0451 -0.8887 27 1 0.8540 -5.0446 0.8913 28 1 2.4859 -8.1562 0.4488 29 1 1.0668 -7.2835 1.0742 30 1 0.3173 -6.9469 -1.3230 31 1 0.3435 -8.6520 -0.8045 32 1 1.4146 -8.1418 -3.1033 33 1 2.4217 -9.0649 -1.9558 34 1 3.9605 -7.2883 -4.1156 35 1 5.3684 -5.2263 -3.3138 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685978236.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:15 Heat of formation + Delta-G solvation = 46.799871 kcal Electronic energy + Delta-G solvation = -16676.737674 eV Core-core repulsion = 14095.887430 eV Total energy + Delta-G solvation = -2580.850244 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.21290 -39.08804 -36.46172 -35.23777 -33.22059 -31.41691 -29.85600 -28.68463 -26.17157 -24.64643 -23.64543 -22.31364 -22.00634 -19.72018 -18.48657 -18.18872 -16.97564 -16.71373 -16.45473 -16.24923 -15.63609 -15.32459 -14.61128 -14.55969 -14.33025 -14.12775 -13.66434 -13.37481 -13.17885 -12.70778 -12.54101 -12.41115 -12.33913 -12.14671 -11.55827 -11.41344 -11.16931 -10.83389 -10.58567 -10.52173 -10.13797 -8.85855 -8.20755 -6.31040 1.06725 1.38096 1.42299 1.50387 1.77914 2.18561 2.40982 2.64583 3.11645 3.47765 3.71768 3.86714 4.00043 4.11910 4.18984 4.32459 4.41595 4.51064 4.62796 4.67171 4.69898 4.78614 4.88480 4.99708 5.04927 5.21090 5.26038 5.47891 5.54626 5.74510 5.76321 5.88165 5.97406 6.28570 6.58985 6.83366 7.29631 7.37373 8.91102 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.034513 B = 0.005915 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.092112 B = 4732.250305 C = 5221.924789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.050 0.950 9 C 0.033 3.967 10 C -0.092 4.092 11 C 0.078 3.922 12 N -0.463 5.463 13 C 0.042 3.958 14 C -0.168 4.168 15 C 0.098 3.902 16 N -0.486 5.486 17 C -0.039 4.039 18 C -0.060 4.060 19 N -0.526 5.526 20 C 0.364 3.636 21 H 0.265 0.735 22 H -0.014 1.014 23 H -0.002 1.002 24 H 0.043 0.957 25 H 0.050 0.950 26 H 0.029 0.971 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.112 0.888 30 H 0.060 0.940 31 H 0.137 0.863 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.216 0.784 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.007 -20.912 -5.282 21.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.068 0.932 9 C -0.005 4.005 10 C -0.130 4.130 11 C -0.049 4.049 12 N -0.185 5.185 13 C -0.084 4.084 14 C -0.207 4.207 15 C -0.023 4.023 16 N -0.176 5.176 17 C -0.173 4.173 18 C -0.207 4.207 19 N -0.248 5.248 20 C 0.013 3.987 21 H 0.074 0.926 22 H 0.005 0.995 23 H 0.017 0.983 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.130 0.870 30 H 0.079 0.921 31 H 0.155 0.845 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.233 0.767 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 2.379 -20.207 -4.414 20.820 hybrid contribution -0.428 0.467 -1.048 1.225 sum 1.951 -19.740 -5.462 20.575 Atomic orbital electron populations 1.70074 1.07610 1.27876 1.51665 1.25950 0.95849 1.03188 0.94567 0.85512 0.78371 0.78113 0.79138 1.19546 1.20118 1.19151 1.21607 0.93237 0.92634 1.50699 0.93158 1.18911 0.94078 0.92872 0.94612 1.21422 0.97811 0.92731 1.01024 1.22152 0.92360 0.89324 1.01055 1.59244 1.26645 1.06357 1.26301 1.22570 0.98224 0.88463 0.99173 1.22557 0.98252 1.05001 0.94890 1.22420 0.88356 0.89454 1.02068 1.46487 1.29157 1.27721 1.14212 1.23007 0.96038 1.02153 0.96053 1.22747 1.04840 0.99433 0.93655 1.70346 1.12028 1.26841 1.15568 1.21469 0.97630 0.91516 0.88109 0.92641 0.99529 0.98335 0.93819 0.93095 0.95243 0.88539 0.88701 0.87018 0.92140 0.84514 0.87140 0.87076 0.76719 0.80087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.80 13.29 21.45 0.28 -58.52 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.96 46.91 29.54 68.60 2.03 48.94 16 4 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.54 -33.80 9.11 25.60 0.23 -33.57 16 8 H 0.05 3.11 7.74 -2.91 -0.02 3.08 16 9 C 0.03 1.89 4.97 29.85 0.15 2.03 16 10 C -0.09 -4.46 5.03 30.59 0.15 -4.31 16 11 C 0.08 2.92 4.58 86.30 0.40 3.32 16 12 N -0.46 -15.23 4.84 -705.69 -3.41 -18.64 16 13 C 0.04 0.87 5.76 86.33 0.50 1.37 16 14 C -0.17 -2.56 6.02 30.85 0.19 -2.38 16 15 C 0.10 1.45 7.13 86.56 0.62 2.07 16 16 N -0.49 -12.53 3.18 -524.58 -1.67 -14.20 16 17 C -0.04 -0.95 11.68 83.06 0.97 0.02 16 18 C -0.06 -1.89 11.85 83.44 0.99 -0.90 16 19 N -0.53 -21.28 9.47 -197.51 -1.87 -23.15 16 20 C 0.36 12.73 6.58 260.27 1.71 14.45 16 21 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 22 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 23 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 24 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.05 2.67 6.17 -2.39 -0.01 2.65 16 26 H 0.03 1.12 6.97 -2.38 -0.02 1.10 16 27 H 0.10 3.28 7.91 -2.39 -0.02 3.26 16 28 H 0.09 1.73 8.13 -2.39 -0.02 1.71 16 29 H 0.11 1.93 7.88 -2.39 -0.02 1.91 16 30 H 0.06 1.21 6.76 -2.39 -0.02 1.19 16 31 H 0.14 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.22 3.01 8.06 -2.91 -0.02 2.98 16 35 H 0.18 4.81 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -79.71 284.63 2.78 -76.92 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: 1.06 Total: 5.95 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: 6.36 Total: -17.31 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -6.67 Total: -114.51 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -79.71 2.78 -76.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685978236.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.724 kcal (2) G-P(sol) polarization free energy of solvation -79.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds