Wall clock time and date at job start Mon Mar 30 2020 03:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86798 * 120.00041 * 2 1 4 4 H 1.48505 * 109.47335 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47250 * 300.00180 * 3 2 1 6 6 H 1.48503 * 109.47151 * 60.00155 * 3 2 1 7 7 C 1.37876 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99975 * 160.96123 * 7 2 1 9 9 C 1.50703 * 120.00281 * 340.95114 * 7 2 1 10 10 C 1.52998 * 115.54853 * 324.80015 * 9 7 2 11 11 N 1.46498 * 109.47219 * 279.10470 * 10 9 7 12 12 C 1.34952 * 126.04092 * 123.57136 * 11 10 9 13 13 C 1.35317 * 107.74790 * 180.14997 * 12 11 10 14 14 C 1.50696 * 126.04002 * 179.88000 * 13 12 11 15 15 C 1.53007 * 109.46866 * 269.70834 * 14 13 12 16 16 N 1.46895 * 109.46995 * 179.97438 * 15 14 13 17 17 C 1.39874 * 107.91907 * 359.61280 * 13 12 11 18 18 N 1.30842 * 108.20342 * 0.23926 * 17 13 12 19 19 C 1.52992 * 117.51558 * 110.49441 * 9 7 2 20 20 C 1.52996 * 117.49948 * 179.12772 * 9 7 2 21 21 H 0.97006 * 120.00013 * 5.01334 * 1 2 3 22 22 H 1.09003 * 109.47091 * 159.10426 * 10 9 7 23 23 H 1.09002 * 109.47363 * 39.10331 * 10 9 7 24 24 H 1.07995 * 126.12723 * 0.02562 * 12 11 10 25 25 H 1.08999 * 109.47544 * 29.70947 * 14 13 12 26 26 H 1.09006 * 109.47358 * 149.71806 * 14 13 12 27 27 H 1.08999 * 109.47131 * 300.00365 * 15 14 13 28 28 H 1.09006 * 109.46338 * 60.00347 * 15 14 13 29 29 H 1.00899 * 110.99884 * 180.02562 * 16 15 14 30 30 H 1.00905 * 111.00398 * 303.95453 * 16 15 14 31 31 H 1.08003 * 125.89975 * 180.22235 * 17 13 12 32 32 H 1.08997 * 117.50390 * 214.97577 * 19 9 7 33 33 H 1.09001 * 117.50212 * 359.97438 * 19 9 7 34 34 H 1.08999 * 117.50059 * 359.97438 * 20 9 7 35 35 H 1.08992 * 117.49983 * 145.00308 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0401 -1.2196 -0.3057 9 6 1.3128 -2.4637 0.4248 10 6 0.2848 -2.3107 1.5476 11 7 0.9748 -2.2697 2.8393 12 6 0.8834 -1.2849 3.7574 13 6 1.6723 -1.6221 4.8039 14 6 1.8772 -0.8109 6.0573 15 6 3.0634 0.1359 5.8637 16 7 3.2628 0.9270 7.0853 17 6 2.2591 -2.8595 4.5193 18 7 1.8417 -3.2487 3.3419 19 6 1.0293 -3.5100 -0.6548 20 6 2.1257 -3.7591 0.3830 21 1 -0.4850 0.8369 -0.0734 22 1 -0.4020 -3.1570 1.5292 23 1 -0.2743 -1.3859 1.4049 24 1 0.2890 -0.3874 3.6714 25 1 0.9787 -0.2299 6.2650 26 1 2.0790 -1.4797 6.8940 27 1 3.9619 -0.4452 5.6560 28 1 2.8616 0.8047 5.0270 29 1 4.0410 1.5609 6.9825 30 1 2.4215 1.4252 7.3348 31 1 2.9395 -3.4001 5.1605 32 1 0.1105 -4.0894 -0.5652 33 1 1.3426 -3.2801 -1.6731 34 1 3.1607 -3.6932 0.0473 35 1 1.9281 -4.5024 1.1552 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693502020.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:16 Heat of formation + Delta-G solvation = 94.305944 kcal Electronic energy + Delta-G solvation = -16698.024724 eV Core-core repulsion = 14119.234498 eV Total energy + Delta-G solvation = -2578.790226 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.43110 -36.74908 -35.30565 -32.37831 -31.83796 -30.57247 -27.38581 -25.86676 -24.99016 -22.01154 -21.12394 -20.61104 -19.51652 -18.99048 -16.50716 -15.87023 -15.53566 -14.89682 -14.54457 -14.29686 -13.95972 -13.74861 -13.25788 -12.76270 -12.29213 -12.13837 -11.85549 -11.49040 -11.38087 -11.07751 -10.87212 -10.75880 -10.50351 -10.34265 -9.83447 -9.57784 -9.28721 -8.82525 -8.65387 -8.50443 -8.21278 -7.57694 -6.27992 -4.23024 2.74974 3.13246 3.23541 3.30393 3.44040 3.49510 4.23150 4.70928 4.82158 5.22299 5.45803 5.52635 5.55981 5.63792 5.83520 5.97391 6.02337 6.11627 6.25515 6.36528 6.42004 6.44025 6.62549 6.76534 6.79749 6.87492 7.01415 7.16624 7.25864 7.34793 7.41702 7.48459 7.77080 7.97344 8.25408 8.58114 8.70228 9.33020 10.75537 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.019290 B = 0.009690 C = 0.007209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.155898 B = 2888.795254 C = 3883.109162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.069 3.931 3 Si 0.889 3.111 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.478 4.478 8 H 0.062 0.938 9 C 0.033 3.967 10 C 0.147 3.853 11 N -0.325 5.325 12 C 0.069 3.931 13 C -0.266 4.266 14 C -0.026 4.026 15 C 0.062 3.938 16 N -0.855 5.855 17 C 0.029 3.971 18 N -0.292 5.292 19 C -0.197 4.197 20 C -0.186 4.186 21 H 0.265 0.735 22 H 0.050 0.950 23 H 0.146 0.854 24 H 0.160 0.840 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.027 0.973 29 H 0.337 0.663 30 H 0.336 0.664 31 H 0.168 0.832 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.918 0.827 8.845 8.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.133 4.133 3 Si 0.717 3.283 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.206 1.206 7 C -0.515 4.515 8 H 0.080 0.920 9 C 0.032 3.968 10 C 0.028 3.972 11 N -0.104 5.104 12 C -0.080 4.080 13 C -0.279 4.279 14 C -0.065 4.065 15 C -0.068 4.068 16 N -0.383 5.383 17 C -0.156 4.156 18 N -0.114 5.114 19 C -0.236 4.236 20 C -0.224 4.224 21 H 0.076 0.924 22 H 0.068 0.932 23 H 0.163 0.837 24 H 0.177 0.823 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.185 0.815 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.874 -0.672 8.189 8.263 hybrid contribution 0.236 2.377 -0.251 2.401 sum 1.110 1.704 7.938 8.195 Atomic orbital electron populations 1.69689 1.06042 1.27151 1.49344 1.24935 0.94765 0.99217 0.94363 0.86556 0.80682 0.83265 0.77822 1.19577 1.20881 1.20611 1.20590 0.97281 0.90020 1.43576 0.91969 1.19074 0.95656 0.89136 0.92894 1.22006 0.93166 1.05284 0.76786 1.48885 1.33194 1.13587 1.14775 1.22205 1.01001 0.94838 0.90002 1.19754 1.08809 0.99689 0.99629 1.19646 0.96590 0.96140 0.94149 1.21883 0.99498 0.95688 0.89745 1.58810 1.10032 1.32119 1.37386 1.23519 1.01313 0.95929 0.94841 1.77262 1.08967 1.14253 1.10910 1.23027 0.98401 1.06317 0.95865 1.22810 0.95508 1.02384 1.01704 0.92423 0.93162 0.83738 0.82304 0.92508 0.91224 0.91023 0.95514 0.85100 0.85205 0.81464 0.91650 0.90234 0.91023 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.91 10.93 55.43 0.61 -22.30 16 2 C 0.07 1.78 5.10 -17.82 -0.09 1.69 16 3 Si 0.89 20.38 29.58 -169.99 -5.03 15.35 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.48 -12.81 9.00 -34.44 -0.31 -13.12 16 8 H 0.06 1.72 7.89 -52.49 -0.41 1.31 16 9 C 0.03 0.82 1.94 -155.67 -0.30 0.52 16 10 C 0.15 3.39 6.19 -4.04 -0.03 3.36 16 11 N -0.33 -7.10 3.67 -61.37 -0.23 -7.32 16 12 C 0.07 1.35 11.36 -17.22 -0.20 1.16 16 13 C -0.27 -4.64 5.35 -105.05 -0.56 -5.21 16 14 C -0.03 -0.37 5.96 -27.88 -0.17 -0.53 16 15 C 0.06 0.86 6.77 -3.82 -0.03 0.83 16 16 N -0.85 -9.73 9.62 -10.37 -0.10 -9.83 16 17 C 0.03 0.53 11.96 -17.36 -0.21 0.32 16 18 N -0.29 -6.22 11.01 30.63 0.34 -5.88 16 19 C -0.20 -4.48 9.88 -26.73 -0.26 -4.75 16 20 C -0.19 -4.25 9.18 -26.73 -0.25 -4.50 16 21 H 0.27 6.52 8.32 -40.82 -0.34 6.18 16 22 H 0.05 1.10 7.94 -51.93 -0.41 0.69 16 23 H 0.15 3.51 5.18 -51.93 -0.27 3.24 16 24 H 0.16 2.86 8.06 -52.49 -0.42 2.43 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.34 3.33 9.08 -39.29 -0.36 2.97 16 30 H 0.34 3.35 8.99 -39.29 -0.35 3.00 16 31 H 0.17 2.50 8.06 -52.48 -0.42 2.07 16 32 H 0.06 1.37 8.08 -51.93 -0.42 0.95 16 33 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 34 H 0.07 1.64 8.14 -51.93 -0.42 1.21 16 35 H 0.08 1.82 7.42 -51.93 -0.39 1.43 16 LS Contribution 296.69 15.07 4.47 4.47 Total: -1.00 -27.83 296.69 -7.46 -35.29 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -5.13 Total: 10.44 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -2.40 Total: -20.22 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.62 Total: -45.34 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.83 -7.46 -35.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693502020.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.597 kcal (2) G-P(sol) polarization free energy of solvation -27.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds