Wall clock time and date at job start Mon Mar 30 2020 03:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86798 * 120.00041 * 2 1 4 4 H 1.48505 * 109.47335 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47250 * 300.00180 * 3 2 1 6 6 H 1.48503 * 109.47151 * 60.00155 * 3 2 1 7 7 C 1.37876 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99975 * 160.96123 * 7 2 1 9 9 C 1.50703 * 120.00281 * 340.95114 * 7 2 1 10 10 C 1.52998 * 115.54853 * 324.80015 * 9 7 2 11 11 N 1.46498 * 109.47219 * 279.10470 * 10 9 7 12 12 C 1.34952 * 126.04092 * 123.57136 * 11 10 9 13 13 C 1.35317 * 107.74790 * 180.14997 * 12 11 10 14 14 C 1.50696 * 126.04002 * 179.88000 * 13 12 11 15 15 C 1.53007 * 109.46866 * 269.70834 * 14 13 12 16 16 N 1.46895 * 109.46995 * 179.97438 * 15 14 13 17 17 C 1.39874 * 107.91907 * 359.61280 * 13 12 11 18 18 N 1.30842 * 108.20342 * 0.23926 * 17 13 12 19 19 C 1.52992 * 117.51558 * 110.49441 * 9 7 2 20 20 C 1.52996 * 117.49948 * 179.12772 * 9 7 2 21 21 H 0.97006 * 120.00013 * 5.01334 * 1 2 3 22 22 H 1.09003 * 109.47091 * 159.10426 * 10 9 7 23 23 H 1.09002 * 109.47363 * 39.10331 * 10 9 7 24 24 H 1.07995 * 126.12723 * 0.02562 * 12 11 10 25 25 H 1.08999 * 109.47544 * 29.70947 * 14 13 12 26 26 H 1.09006 * 109.47358 * 149.71806 * 14 13 12 27 27 H 1.08999 * 109.47131 * 300.00365 * 15 14 13 28 28 H 1.09006 * 109.46338 * 60.00347 * 15 14 13 29 29 H 1.00899 * 110.99884 * 180.02562 * 16 15 14 30 30 H 1.00905 * 111.00398 * 303.95453 * 16 15 14 31 31 H 1.08003 * 125.89975 * 180.22235 * 17 13 12 32 32 H 1.08997 * 117.50390 * 214.97577 * 19 9 7 33 33 H 1.09001 * 117.50212 * 359.97438 * 19 9 7 34 34 H 1.08999 * 117.50059 * 359.97438 * 20 9 7 35 35 H 1.08992 * 117.49983 * 145.00308 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0401 -1.2196 -0.3057 9 6 1.3128 -2.4637 0.4248 10 6 0.2848 -2.3107 1.5476 11 7 0.9748 -2.2697 2.8393 12 6 0.8834 -1.2849 3.7574 13 6 1.6723 -1.6221 4.8039 14 6 1.8772 -0.8109 6.0573 15 6 3.0634 0.1359 5.8637 16 7 3.2628 0.9270 7.0853 17 6 2.2591 -2.8595 4.5193 18 7 1.8417 -3.2487 3.3419 19 6 1.0293 -3.5100 -0.6548 20 6 2.1257 -3.7591 0.3830 21 1 -0.4850 0.8369 -0.0734 22 1 -0.4020 -3.1570 1.5292 23 1 -0.2743 -1.3859 1.4049 24 1 0.2890 -0.3874 3.6714 25 1 0.9787 -0.2299 6.2650 26 1 2.0790 -1.4797 6.8940 27 1 3.9619 -0.4452 5.6560 28 1 2.8616 0.8047 5.0270 29 1 4.0410 1.5609 6.9825 30 1 2.4215 1.4252 7.3348 31 1 2.9395 -3.4001 5.1605 32 1 0.1105 -4.0894 -0.5652 33 1 1.3426 -3.2801 -1.6731 34 1 3.1607 -3.6932 0.0473 35 1 1.9281 -4.5024 1.1552 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693502020.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:16 Heat of formation + Delta-G solvation = 77.502389 kcal Electronic energy + Delta-G solvation = -16698.753381 eV Core-core repulsion = 14119.234498 eV Total energy + Delta-G solvation = -2579.518883 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.93501 -38.55255 -36.41530 -34.35008 -33.33929 -31.91934 -28.84160 -27.76379 -26.55687 -23.23410 -22.88715 -22.21385 -21.07091 -20.67963 -18.31402 -17.38376 -16.79252 -16.60658 -15.98812 -15.83662 -15.56415 -14.94218 -14.87651 -14.37686 -13.73503 -13.67700 -13.51403 -13.08241 -12.94296 -12.71019 -12.54867 -12.36146 -12.19744 -11.97872 -11.57132 -11.26262 -11.11135 -10.68931 -10.12393 -10.10778 -9.60777 -9.05581 -8.24364 -6.25990 1.22390 1.30835 1.36891 1.47014 1.91647 2.04172 2.33078 2.86368 3.60745 3.72818 3.92092 4.14550 4.21859 4.28566 4.44592 4.47745 4.57922 4.61147 4.70600 4.76765 4.91235 4.95337 5.08757 5.10688 5.21867 5.31013 5.40107 5.47490 5.53105 5.79153 6.01624 6.23996 6.30724 6.39538 6.64211 6.67279 7.06242 7.31656 8.78243 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.019290 B = 0.009690 C = 0.007209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.155898 B = 2888.795254 C = 3883.109162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.041 3.959 3 Si 0.940 3.060 4 H -0.281 1.281 5 H -0.276 1.276 6 H -0.271 1.271 7 C -0.506 4.506 8 H 0.041 0.959 9 C 0.011 3.989 10 C 0.157 3.843 11 N -0.345 5.345 12 C 0.048 3.952 13 C -0.253 4.253 14 C -0.020 4.020 15 C 0.069 3.931 16 N -0.852 5.852 17 C 0.031 3.969 18 N -0.324 5.324 19 C -0.191 4.191 20 C -0.174 4.174 21 H 0.271 0.729 22 H 0.054 0.946 23 H 0.131 0.869 24 H 0.167 0.833 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.009 0.991 29 H 0.347 0.653 30 H 0.346 0.654 31 H 0.201 0.799 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.085 1.424 10.376 10.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.160 4.160 3 Si 0.766 3.234 4 H -0.206 1.206 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.010 3.990 10 C 0.037 3.963 11 N -0.125 5.125 12 C -0.100 4.100 13 C -0.265 4.265 14 C -0.059 4.059 15 C -0.062 4.062 16 N -0.382 5.382 17 C -0.154 4.154 18 N -0.146 5.146 19 C -0.230 4.230 20 C -0.212 4.212 21 H 0.081 0.919 22 H 0.072 0.928 23 H 0.148 0.852 24 H 0.185 0.815 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.081 0.919 28 H 0.028 0.972 29 H 0.160 0.840 30 H 0.159 0.841 31 H 0.218 0.782 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.033 -0.063 9.734 9.789 hybrid contribution 0.214 2.190 -0.667 2.299 sum 1.246 2.127 9.068 9.397 Atomic orbital electron populations 1.69755 1.06618 1.27983 1.48905 1.25424 0.95467 1.01278 0.93867 0.85779 0.78999 0.80327 0.78266 1.20559 1.20191 1.19593 1.20666 0.96632 0.91838 1.45160 0.94079 1.19183 0.96753 0.88901 0.94135 1.21680 0.92783 1.04566 0.77294 1.48779 1.34292 1.14599 1.14835 1.22584 1.01997 0.95019 0.90414 1.20113 1.06998 0.99383 1.00018 1.19673 0.97347 0.96157 0.92710 1.21710 0.98867 0.95513 0.90138 1.58757 1.11027 1.32623 1.35789 1.24148 1.00843 0.96278 0.94169 1.77204 1.09913 1.15054 1.12461 1.23031 0.99033 1.05650 0.95251 1.22699 0.95082 1.01687 1.01699 0.91945 0.92782 0.85158 0.81528 0.91218 0.89853 0.91853 0.97225 0.83988 0.84073 0.78230 0.89918 0.90816 0.91705 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.21 10.93 21.45 0.23 -45.97 16 2 C 0.04 2.10 5.10 84.66 0.43 2.53 16 3 Si 0.94 41.64 29.58 68.60 2.03 43.67 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.51 -27.52 9.00 25.60 0.23 -27.29 16 8 H 0.04 2.34 7.89 -2.91 -0.02 2.31 16 9 C 0.01 0.56 1.94 -52.93 -0.10 0.46 16 10 C 0.16 7.28 6.19 86.38 0.53 7.81 16 11 N -0.35 -14.99 3.67 -348.06 -1.28 -16.27 16 12 C 0.05 1.84 11.36 83.54 0.95 2.79 16 13 C -0.25 -8.36 5.35 -20.14 -0.11 -8.47 16 14 C -0.02 -0.51 5.96 29.85 0.18 -0.33 16 15 C 0.07 1.74 6.77 86.31 0.58 2.32 16 16 N -0.85 -17.09 9.62 -186.71 -1.80 -18.88 16 17 C 0.03 1.06 11.96 85.24 1.02 2.08 16 18 N -0.32 -13.59 11.01 -57.02 -0.63 -14.21 16 19 C -0.19 -8.66 9.88 30.59 0.30 -8.35 16 20 C -0.17 -7.96 9.18 30.59 0.28 -7.68 16 21 H 0.27 13.13 8.32 -92.70 -0.77 12.36 16 22 H 0.05 2.37 7.94 -2.39 -0.02 2.35 16 23 H 0.13 6.39 5.18 -2.39 -0.01 6.38 16 24 H 0.17 5.91 8.06 -2.91 -0.02 5.89 16 25 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 27 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 29 H 0.35 5.99 9.08 -89.69 -0.81 5.17 16 30 H 0.35 5.90 8.99 -89.69 -0.81 5.09 16 31 H 0.20 5.38 8.06 -2.91 -0.02 5.35 16 32 H 0.08 3.41 8.08 -2.39 -0.02 3.39 16 33 H 0.07 3.38 8.14 -2.39 -0.02 3.36 16 34 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 35 H 0.09 3.86 7.42 -2.39 -0.02 3.84 16 Total: -1.00 -58.25 296.69 2.34 -55.91 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: -0.53 Total: 29.89 kcal Atomic # 6 Polarization: -38.43 SS G_CDS: 4.30 Total: -34.13 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -3.47 Total: -95.34 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -58.25 2.34 -55.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693502020.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.412 kcal (2) G-P(sol) polarization free energy of solvation -58.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds