Wall clock time and date at job start Mon Mar 30 2020 03:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99668 * 2 1 4 4 H 1.48497 * 109.47102 * 239.99981 * 3 2 1 5 5 H 1.48502 * 109.47448 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47151 * 119.99722 * 3 2 1 7 7 C 1.37877 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99892 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99964 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47072 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47086 * 179.97438 * 10 9 7 12 12 N 1.46896 * 109.46926 * 180.02562 * 11 10 9 13 13 C 1.47968 * 110.99825 * 190.00315 * 12 11 10 14 14 C 1.53940 * 86.17908 * 222.41485 * 13 12 11 15 15 N 1.46496 * 113.73274 * 138.07642 * 14 13 12 16 16 C 1.36880 * 126.39785 * 119.99547 * 15 14 13 17 17 C 1.34674 * 106.82015 * 179.73791 * 16 15 14 18 18 N 1.34130 * 108.01710 * 0.23538 * 17 16 15 19 19 C 1.30496 * 109.26014 * 359.97438 * 18 17 16 20 20 C 1.47959 * 111.00430 * 90.64544 * 12 11 10 21 21 H 0.97000 * 120.00474 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47186 * 59.99189 * 9 7 2 23 23 H 1.09002 * 109.46906 * 299.99626 * 9 7 2 24 24 H 1.09003 * 109.47088 * 59.99907 * 10 9 7 25 25 H 1.09002 * 109.47159 * 299.99728 * 10 9 7 26 26 H 1.09003 * 109.46870 * 60.00219 * 11 10 9 27 27 H 1.09002 * 109.47264 * 300.00110 * 11 10 9 28 28 H 1.08994 * 113.76045 * 108.09993 * 13 12 11 29 29 H 1.09005 * 113.85912 * 336.74506 * 13 12 11 30 30 H 1.08991 * 113.73333 * 269.25515 * 14 13 12 31 31 H 1.08002 * 126.59253 * 0.02562 * 16 15 14 32 32 H 1.07997 * 125.99347 * 180.23004 * 17 16 15 33 33 H 1.07994 * 125.65225 * 179.97438 * 19 18 17 34 34 H 1.09004 * 113.75685 * 23.25651 * 20 12 11 35 35 H 1.08998 * 113.75668 * 251.90266 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 7 2.4351 -6.1035 0.0018 13 6 1.7458 -7.3907 -0.2375 14 6 2.6489 -7.9624 0.8703 15 7 1.9519 -8.8603 1.7945 16 6 2.2492 -10.1758 2.0282 17 6 1.3691 -10.6169 2.9472 18 7 0.5533 -9.5998 3.2621 19 6 0.8947 -8.5452 2.5736 20 6 2.7679 -6.5160 1.3832 21 1 -0.4851 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8903 24 1 2.8721 -3.6042 0.8905 25 1 2.8721 -3.6042 -0.8895 26 1 0.8536 -5.0451 -0.8886 27 1 0.8541 -5.0446 0.8914 28 1 1.9376 -7.8150 -1.2230 29 1 0.6870 -7.3787 0.0215 30 1 3.5868 -8.3773 0.5012 31 1 3.0406 -10.7486 1.5679 32 1 1.3274 -11.6146 3.3584 33 1 0.4136 -7.5795 2.6213 34 1 2.0084 -6.2463 2.1171 35 1 3.7763 -6.2413 1.6926 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695503277.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:01 Heat of formation + Delta-G solvation = 89.581666 kcal Electronic energy + Delta-G solvation = -15876.087196 eV Core-core repulsion = 13297.092109 eV Total energy + Delta-G solvation = -2578.995086 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.32396 -39.79901 -34.55881 -33.13496 -31.68874 -29.58837 -28.38805 -26.47271 -25.41814 -22.97521 -21.74667 -21.27506 -20.16884 -19.67817 -17.69584 -16.28362 -16.03596 -15.58401 -14.74799 -14.73096 -14.40993 -14.16328 -13.82925 -13.49312 -13.06341 -12.90648 -12.28335 -12.22641 -11.72493 -11.31426 -11.11064 -10.81196 -10.65599 -10.53373 -10.11256 -9.73240 -9.69888 -9.36752 -9.13530 -8.91969 -8.65794 -8.36890 -6.02125 -4.04633 1.88241 2.54780 3.05791 3.32192 3.36560 3.39043 3.73266 4.05262 4.35199 4.44769 4.57934 4.63267 4.90794 5.05241 5.20983 5.26280 5.33788 5.36509 5.43885 5.53390 5.58443 5.73710 6.11650 6.15078 6.24350 6.56305 6.60290 6.69920 7.02765 7.06503 7.08958 7.63790 7.77466 7.95231 7.97291 8.40330 9.02157 9.59624 11.09254 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.056725 B = 0.003891 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.490552 B = 7193.982089 C = 7357.177458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.100 4.100 11 C 0.023 3.977 12 N -0.472 5.472 13 C -0.005 4.005 14 C 0.100 3.900 15 N -0.448 5.448 16 C -0.057 4.057 17 C -0.035 4.035 18 N -0.496 5.496 19 C 0.184 3.816 20 C 0.001 3.999 21 H 0.261 0.739 22 H 0.015 0.985 23 H 0.014 0.986 24 H 0.046 0.954 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.131 0.869 31 H 0.172 0.828 32 H 0.168 0.832 33 H 0.200 0.800 34 H 0.081 0.919 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.865 -18.606 1.766 19.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.138 4.138 11 C -0.104 4.104 12 N -0.195 5.195 13 C -0.135 4.135 14 C -0.004 4.004 15 N -0.131 5.131 16 C -0.190 4.190 17 C -0.182 4.182 18 N -0.214 5.214 19 C -0.099 4.099 20 C -0.128 4.128 21 H 0.071 0.929 22 H 0.034 0.966 23 H 0.032 0.968 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.060 0.940 28 H 0.117 0.883 29 H 0.096 0.904 30 H 0.149 0.851 31 H 0.190 0.810 32 H 0.185 0.815 33 H 0.217 0.783 34 H 0.099 0.901 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.644 -18.188 1.783 18.856 hybrid contribution 0.394 0.857 -0.101 0.948 sum 5.038 -17.331 1.681 18.127 Atomic orbital electron populations 1.69950 1.06070 1.26755 1.50797 1.25028 0.94856 0.99287 0.95296 0.86648 0.79580 0.83074 0.78646 1.20212 1.21278 1.20231 1.21199 0.93023 0.91015 1.50673 0.92707 1.19082 0.94004 0.91441 0.97093 1.21543 0.99063 0.92233 1.00939 1.22875 0.94138 0.92414 1.01020 1.68604 1.32473 1.01818 1.16565 1.24438 0.97681 0.91787 0.99557 1.23699 0.97248 0.89362 0.90067 1.45735 1.25266 1.09913 1.32217 1.22766 1.05402 0.85440 1.05384 1.22315 0.96033 0.99318 1.00582 1.70322 1.27056 0.99425 1.24568 1.24895 0.90791 1.00459 0.93717 1.24470 1.04188 0.91073 0.93118 0.92925 0.96629 0.96801 0.93474 0.92545 0.90899 0.93965 0.88297 0.90414 0.85135 0.81024 0.81514 0.78311 0.90095 0.88050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.41 16 10 C -0.10 -2.00 5.46 -26.73 -0.15 -2.15 16 11 C 0.02 0.37 4.80 -3.83 -0.02 0.35 16 12 N -0.47 -6.15 6.16 -238.42 -1.47 -7.62 16 13 C -0.01 -0.05 7.63 -2.76 -0.02 -0.07 16 14 C 0.10 0.93 4.83 -69.62 -0.34 0.59 16 15 N -0.45 -4.62 2.95 -112.71 -0.33 -4.96 16 16 C -0.06 -0.54 11.58 -16.56 -0.19 -0.74 16 17 C -0.03 -0.38 11.87 -17.81 -0.21 -0.60 16 18 N -0.50 -6.75 11.25 -14.66 -0.16 -6.91 16 19 C 0.18 2.18 11.38 -90.37 -1.03 1.15 16 20 C 0.00 0.01 7.51 -2.77 -0.02 -0.01 16 21 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 22 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 27 H 0.04 0.65 7.38 -51.93 -0.38 0.27 16 28 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 0.82 7.71 -51.93 -0.40 0.42 16 30 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.20 2.03 7.43 -52.49 -0.39 1.64 16 34 H 0.08 0.91 6.25 -51.93 -0.32 0.58 16 35 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 295.11 15.07 4.45 4.45 Total: -1.00 -31.97 295.11 -9.59 -41.56 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -5.26 Total: -2.39 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -2.52 Total: -14.58 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -1.23 Total: -45.64 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.97 -9.59 -41.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695503277.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.141 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds