Wall clock time and date at job start Mon Mar 30 2020 03:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99668 * 2 1 4 4 H 1.48497 * 109.47102 * 239.99981 * 3 2 1 5 5 H 1.48502 * 109.47448 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47151 * 119.99722 * 3 2 1 7 7 C 1.37877 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99892 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99964 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47072 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47086 * 179.97438 * 10 9 7 12 12 N 1.46896 * 109.46926 * 180.02562 * 11 10 9 13 13 C 1.47968 * 110.99825 * 190.00315 * 12 11 10 14 14 C 1.53940 * 86.17908 * 222.41485 * 13 12 11 15 15 N 1.46496 * 113.73274 * 138.07642 * 14 13 12 16 16 C 1.36880 * 126.39785 * 119.99547 * 15 14 13 17 17 C 1.34674 * 106.82015 * 179.73791 * 16 15 14 18 18 N 1.34130 * 108.01710 * 0.23538 * 17 16 15 19 19 C 1.30496 * 109.26014 * 359.97438 * 18 17 16 20 20 C 1.47959 * 111.00430 * 90.64544 * 12 11 10 21 21 H 0.97000 * 120.00474 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47186 * 59.99189 * 9 7 2 23 23 H 1.09002 * 109.46906 * 299.99626 * 9 7 2 24 24 H 1.09003 * 109.47088 * 59.99907 * 10 9 7 25 25 H 1.09002 * 109.47159 * 299.99728 * 10 9 7 26 26 H 1.09003 * 109.46870 * 60.00219 * 11 10 9 27 27 H 1.09002 * 109.47264 * 300.00110 * 11 10 9 28 28 H 1.08994 * 113.76045 * 108.09993 * 13 12 11 29 29 H 1.09005 * 113.85912 * 336.74506 * 13 12 11 30 30 H 1.08991 * 113.73333 * 269.25515 * 14 13 12 31 31 H 1.08002 * 126.59253 * 0.02562 * 16 15 14 32 32 H 1.07997 * 125.99347 * 180.23004 * 17 16 15 33 33 H 1.07994 * 125.65225 * 179.97438 * 19 18 17 34 34 H 1.09004 * 113.75685 * 23.25651 * 20 12 11 35 35 H 1.08998 * 113.75668 * 251.90266 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 7 2.4351 -6.1035 0.0018 13 6 1.7458 -7.3907 -0.2375 14 6 2.6489 -7.9624 0.8703 15 7 1.9519 -8.8603 1.7945 16 6 2.2492 -10.1758 2.0282 17 6 1.3691 -10.6169 2.9472 18 7 0.5533 -9.5998 3.2621 19 6 0.8947 -8.5452 2.5736 20 6 2.7679 -6.5160 1.3832 21 1 -0.4851 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8903 24 1 2.8721 -3.6042 0.8905 25 1 2.8721 -3.6042 -0.8895 26 1 0.8536 -5.0451 -0.8886 27 1 0.8541 -5.0446 0.8914 28 1 1.9376 -7.8150 -1.2230 29 1 0.6870 -7.3787 0.0215 30 1 3.5868 -8.3773 0.5012 31 1 3.0406 -10.7486 1.5679 32 1 1.3274 -11.6146 3.3584 33 1 0.4136 -7.5795 2.6213 34 1 2.0084 -6.2463 2.1171 35 1 3.7763 -6.2413 1.6926 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695503277.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:01 Heat of formation + Delta-G solvation = 69.081947 kcal Electronic energy + Delta-G solvation = -15876.976130 eV Core-core repulsion = 13297.092109 eV Total energy + Delta-G solvation = -2579.884021 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.14205 -40.73987 -36.24213 -34.55622 -33.26695 -30.48050 -29.79325 -27.37361 -26.96742 -24.43253 -22.74950 -22.26017 -21.72797 -20.51145 -18.74939 -18.22221 -17.01386 -16.64440 -16.37302 -15.90442 -15.62491 -15.00050 -14.80406 -14.67849 -14.35646 -13.91532 -13.84504 -13.66996 -13.15965 -12.76157 -12.57444 -12.54400 -12.18844 -12.10548 -11.46743 -11.36464 -11.07953 -10.96117 -10.56001 -10.54381 -9.97966 -9.44500 -8.21258 -6.32429 1.08861 1.39602 1.42497 1.50500 1.75249 2.21350 2.40199 2.83739 3.11940 3.23736 3.51305 3.79408 3.92460 3.97597 4.07429 4.23856 4.33806 4.47946 4.59978 4.63258 4.69755 4.70445 4.81486 4.87345 5.04287 5.18752 5.31908 5.37068 5.50616 5.73082 5.83866 5.84838 5.87402 6.22604 6.24938 6.84419 7.13304 7.37016 8.90324 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.056725 B = 0.003891 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.490552 B = 7193.982089 C = 7357.177458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.024 3.976 10 C -0.085 4.085 11 C 0.035 3.965 12 N -0.482 5.482 13 C -0.003 4.003 14 C 0.118 3.882 15 N -0.447 5.447 16 C -0.043 4.043 17 C -0.060 4.060 18 N -0.534 5.534 19 C 0.167 3.833 20 C -0.005 4.005 21 H 0.264 0.736 22 H -0.008 1.008 23 H -0.009 1.009 24 H 0.047 0.953 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.115 0.885 29 H 0.074 0.926 30 H 0.158 0.842 31 H 0.209 0.791 32 H 0.184 0.816 33 H 0.205 0.795 34 H 0.076 0.924 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.697 -19.492 1.410 20.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.123 4.123 11 C -0.093 4.093 12 N -0.204 5.204 13 C -0.132 4.132 14 C 0.015 3.985 15 N -0.130 5.130 16 C -0.176 4.176 17 C -0.207 4.207 18 N -0.253 5.253 19 C -0.115 4.115 20 C -0.134 4.134 21 H 0.073 0.927 22 H 0.010 0.990 23 H 0.009 0.991 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.133 0.867 29 H 0.092 0.908 30 H 0.176 0.824 31 H 0.226 0.774 32 H 0.202 0.798 33 H 0.222 0.778 34 H 0.094 0.906 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.488 -19.094 1.426 20.217 hybrid contribution -0.192 1.077 0.018 1.095 sum 6.296 -18.017 1.444 19.140 Atomic orbital electron populations 1.70082 1.07787 1.27868 1.51635 1.25984 0.95779 1.03380 0.94698 0.85511 0.78300 0.78095 0.79224 1.19145 1.20814 1.19149 1.21674 0.93533 0.92468 1.50628 0.92294 1.18989 0.94442 0.93149 0.94761 1.21269 0.97832 0.92564 1.00629 1.22580 0.94038 0.91736 1.00943 1.68521 1.31860 1.01944 1.18092 1.24488 0.97617 0.90172 1.00926 1.23646 0.97667 0.88357 0.88845 1.45789 1.24823 1.10397 1.31953 1.23327 1.05189 0.84935 1.04112 1.22760 0.96468 0.99829 1.01659 1.70274 1.28547 1.00650 1.25834 1.25024 0.91627 1.00530 0.94311 1.24540 1.04359 0.92473 0.92043 0.92746 0.99003 0.99059 0.93408 0.92998 0.91282 0.93920 0.86684 0.90808 0.82443 0.77409 0.79845 0.77847 0.90568 0.87408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 7 C -0.55 -31.18 9.11 25.60 0.23 -30.95 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.08 -3.43 5.46 30.59 0.17 -3.26 16 11 C 0.04 1.12 4.80 86.30 0.41 1.54 16 12 N -0.48 -11.75 6.16 -908.23 -5.59 -17.34 16 13 C 0.00 -0.05 7.63 86.41 0.66 0.61 16 14 C 0.12 1.85 4.83 46.56 0.23 2.07 16 15 N -0.45 -8.18 2.95 -510.49 -1.51 -9.69 16 16 C -0.04 -0.69 11.58 83.09 0.96 0.27 16 17 C -0.06 -1.25 11.87 83.52 0.99 -0.26 16 18 N -0.53 -14.29 11.25 -200.31 -2.25 -16.54 16 19 C 0.17 3.84 11.38 180.26 2.05 5.89 16 20 C 0.00 -0.10 7.51 86.40 0.65 0.55 16 21 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 22 H -0.01 -0.48 8.14 -2.39 -0.02 -0.49 16 23 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 24 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.07 2.22 8.08 -2.39 -0.02 2.20 16 27 H 0.04 1.33 7.38 -2.39 -0.02 1.31 16 28 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.07 1.46 7.71 -2.38 -0.02 1.44 16 30 H 0.16 1.70 8.14 -2.39 -0.02 1.69 16 31 H 0.21 1.70 8.06 -2.91 -0.02 1.67 16 32 H 0.18 2.88 8.06 -2.91 -0.02 2.85 16 33 H 0.20 4.17 7.43 -2.91 -0.02 4.15 16 34 H 0.08 1.64 6.25 -2.38 -0.01 1.63 16 35 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -69.38 295.11 0.97 -68.41 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 1.05 Total: 7.25 kcal Atomic # 6 Polarization: -28.67 SS G_CDS: 6.96 Total: -21.71 kcal Atomic # 7 Polarization: -91.18 SS G_CDS: -9.07 Total: -100.25 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -69.38 0.97 -68.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695503277.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.489 kcal (2) G-P(sol) polarization free energy of solvation -69.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds