Wall clock time and date at job start Mon Mar 30 2020 03:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38387 * 119.99906 * 2 1 4 4 N 1.32131 * 119.99427 * 179.97438 * 3 2 1 5 5 C 1.32153 * 120.00387 * 359.97438 * 4 3 2 6 6 C 1.50691 * 119.99872 * 179.72883 * 5 4 3 7 7 N 1.46503 * 109.47314 * 275.00209 * 6 5 4 8 8 C 1.36935 * 120.00141 * 89.99889 * 7 6 5 9 9 H 1.08002 * 120.00345 * 217.20737 * 8 7 6 10 10 C 1.38811 * 119.99953 * 37.20506 * 8 7 6 11 11 N 1.31621 * 119.99979 * 21.22846 * 10 8 7 12 12 Si 1.86800 * 120.00161 * 201.21944 * 10 8 7 13 13 H 1.48502 * 109.47220 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.46910 * 120.00033 * 12 10 8 15 15 H 1.48502 * 109.47255 * 240.00493 * 12 10 8 16 16 C 1.46499 * 119.99905 * 270.00388 * 7 6 5 17 17 C 1.53002 * 109.47348 * 114.98126 * 16 7 6 18 18 C 1.53004 * 109.47376 * 234.98068 * 16 7 6 19 19 C 1.38343 * 119.99819 * 0.02562 * 5 4 3 20 20 N 1.32122 * 119.99984 * 179.97438 * 2 1 3 21 21 H 1.09003 * 109.47256 * 90.00645 * 1 2 3 22 22 H 1.09001 * 109.47122 * 210.00194 * 1 2 3 23 23 H 1.08991 * 109.47539 * 330.00230 * 1 2 3 24 24 H 1.08001 * 120.00513 * 359.97438 * 3 2 1 25 25 H 1.09002 * 109.47754 * 34.99951 * 6 5 4 26 26 H 1.09001 * 109.47539 * 155.00309 * 6 5 4 27 27 H 0.96994 * 119.99957 * 180.02562 * 11 10 8 28 28 H 1.09002 * 109.47423 * 354.98268 * 16 7 6 29 29 H 1.08998 * 109.46949 * 63.07248 * 17 16 7 30 30 H 1.09002 * 109.47381 * 183.07008 * 17 16 7 31 31 H 1.08999 * 109.47111 * 303.07280 * 17 16 7 32 32 H 1.09003 * 109.47072 * 61.69655 * 18 16 7 33 33 H 1.08996 * 109.47323 * 181.69933 * 18 16 7 34 34 H 1.09005 * 109.46733 * 301.70342 * 18 16 7 35 35 H 1.07999 * 119.99686 * 179.97438 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1985 0.0000 4 7 3.5202 1.1984 0.0005 5 6 4.1809 0.0539 0.0015 6 6 5.6878 0.0539 -0.0041 7 7 6.1711 0.1701 -1.3822 8 6 6.3973 1.4061 -1.9265 9 1 6.1653 1.5895 -2.9652 10 6 6.9248 2.4235 -1.1431 11 7 7.5869 2.1315 -0.0437 12 14 6.6952 4.2068 -1.6494 13 1 5.9202 4.2663 -2.9148 14 1 5.9588 4.9330 -0.5838 15 1 8.0237 4.8389 -1.8520 16 6 6.4123 -1.0360 -2.1780 17 6 5.4360 -1.0737 -3.3555 18 6 7.8481 -1.0198 -2.7064 19 6 3.4892 -1.1442 0.0015 20 7 2.1676 -1.1442 0.0005 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8899 0.5137 24 1 1.6589 2.1338 -0.0004 25 1 6.0535 0.8975 0.5815 26 1 6.0529 -0.8762 0.4317 27 1 7.9552 2.8424 0.5039 28 1 6.2643 -1.9181 -1.5550 29 1 5.6207 -0.2204 -4.0081 30 1 5.5786 -1.9975 -3.9163 31 1 4.4133 -1.0302 -2.9811 32 1 8.5440 -1.0234 -1.8674 33 1 8.0182 -1.9021 -3.3233 34 1 8.0050 -0.1223 -3.3047 35 1 4.0292 -2.0795 0.0020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695654310.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:41 Heat of formation + Delta-G solvation = 57.733526 kcal Electronic energy + Delta-G solvation = -16994.235618 eV Core-core repulsion = 14413.859493 eV Total energy + Delta-G solvation = -2580.376125 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.42530 -36.61676 -33.95061 -32.56516 -32.28577 -30.15996 -27.90034 -26.21641 -25.17711 -23.97088 -23.20864 -21.15268 -19.58731 -17.02705 -16.54413 -15.51734 -15.21358 -14.80648 -14.60341 -14.07449 -13.62941 -13.09812 -12.74790 -12.42922 -12.36346 -12.28268 -11.74248 -11.52180 -11.33288 -11.20887 -10.85302 -10.75395 -10.55746 -10.41280 -10.34014 -10.11081 -9.95120 -9.65650 -8.50066 -8.39637 -8.34465 -6.63630 -5.81624 -3.36145 1.40274 1.82258 3.39641 3.48206 3.50440 4.27351 4.52324 4.55528 4.91997 5.07779 5.25245 5.40681 5.42732 5.58171 5.68069 5.85885 5.88226 5.92973 6.06017 6.14087 6.25855 6.30703 6.40431 6.58451 6.67667 6.74350 6.76079 7.04699 7.16052 7.29900 7.54160 7.83332 7.96708 8.46313 8.60356 9.13502 9.77907 10.32579 11.19631 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.021049 B = 0.010043 C = 0.007825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.925216 B = 2787.438674 C = 3577.615625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.035 3.965 3 C 0.050 3.950 4 N -0.415 5.415 5 C 0.090 3.910 6 C 0.184 3.816 7 N -0.564 5.564 8 C -0.247 4.247 9 H 0.058 0.942 10 C 0.023 3.977 11 N -0.881 5.881 12 Si 0.897 3.103 13 H -0.278 1.278 14 H -0.286 1.286 15 H -0.292 1.292 16 C 0.163 3.837 17 C -0.155 4.155 18 C -0.143 4.143 19 C 0.040 3.960 20 N -0.446 5.446 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.154 0.846 25 H 0.116 0.884 26 H 0.047 0.953 27 H 0.255 0.745 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.038 0.962 31 H 0.039 0.961 32 H 0.050 0.950 33 H 0.031 0.969 34 H 0.059 0.941 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.015 -4.974 -0.079 9.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C -0.111 4.111 4 N -0.130 5.130 5 C -0.053 4.053 6 C 0.056 3.944 7 N -0.283 5.283 8 C -0.377 4.377 9 H 0.076 0.924 10 C -0.177 4.177 11 N -0.523 5.523 12 Si 0.727 3.273 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.219 1.219 16 C 0.056 3.944 17 C -0.214 4.214 18 C -0.202 4.202 19 C -0.122 4.122 20 N -0.162 5.162 21 H 0.090 0.910 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.171 0.829 25 H 0.133 0.867 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.078 0.922 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.860 -4.863 0.021 9.243 hybrid contribution -0.287 1.014 -0.329 1.104 sum -8.147 -3.850 -0.309 9.016 Atomic orbital electron populations 1.20523 0.88878 1.02892 1.02551 1.22017 0.97667 0.90235 1.00607 1.23597 0.91754 0.98336 0.97451 1.68520 1.07094 1.30092 1.07297 1.24076 1.01774 0.88181 0.91299 1.20047 0.82307 1.02736 0.89319 1.43812 1.72176 1.01658 1.10641 1.18852 1.35696 0.87033 0.96096 0.92394 1.25062 0.96061 0.98771 0.97850 1.69951 1.34312 1.31662 1.16331 0.86335 0.77238 0.85489 0.78270 1.20292 1.21219 1.21891 1.20465 0.92899 0.89226 0.91785 1.22200 0.99604 0.99903 0.99694 1.22003 0.97811 0.99898 1.00505 1.23505 0.90167 0.99590 0.98956 1.68105 1.09226 1.29382 1.09495 0.90978 0.91018 0.90999 0.82854 0.86711 0.93478 0.93508 0.93459 0.92869 0.94299 0.94228 0.93070 0.94958 0.92201 0.82612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.06 10.19 36.00 0.37 -0.70 16 2 C 0.04 0.59 6.79 -82.41 -0.56 0.03 16 3 C 0.05 0.89 10.88 -17.37 -0.19 0.70 16 4 N -0.42 -9.08 10.42 -9.29 -0.10 -9.18 16 5 C 0.09 1.90 6.37 -82.42 -0.52 1.37 16 6 C 0.18 4.19 5.61 -5.20 -0.03 4.16 16 7 N -0.56 -13.37 2.35 -167.02 -0.39 -13.76 16 8 C -0.25 -6.53 8.04 -15.06 -0.12 -6.65 16 9 H 0.06 1.58 7.13 -52.49 -0.37 1.21 16 10 C 0.02 0.64 4.96 -17.43 -0.09 0.55 16 11 N -0.88 -24.54 11.43 55.49 0.63 -23.91 16 12 Si 0.90 21.91 29.60 -169.99 -5.03 16.87 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 C 0.16 3.30 3.37 -67.93 -0.23 3.07 16 17 C -0.15 -2.93 9.19 37.16 0.34 -2.59 16 18 C -0.14 -2.81 9.11 37.16 0.34 -2.47 16 19 C 0.04 0.74 10.86 -17.37 -0.19 0.55 16 20 N -0.45 -8.10 10.42 -9.29 -0.10 -8.20 16 21 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 24 H 0.15 2.25 8.06 -52.49 -0.42 1.83 16 25 H 0.12 3.02 5.48 -51.93 -0.28 2.73 16 26 H 0.05 0.97 7.79 -51.93 -0.40 0.56 16 27 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.05 0.88 7.77 -51.93 -0.40 0.48 16 29 H 0.05 1.07 7.31 -51.93 -0.38 0.69 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 1.27 7.50 -51.93 -0.39 0.88 16 35 H 0.16 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 295.27 15.07 4.45 4.45 Total: -1.00 -29.52 295.27 -6.59 -36.11 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.17 Total: -0.40 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -0.88 Total: -1.98 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.05 Total: -55.05 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.52 -6.59 -36.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695654310.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.840 kcal (2) G-P(sol) polarization free energy of solvation -29.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds