Wall clock time and date at job start Mon Mar 30 2020 03:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38387 * 119.99906 * 2 1 4 4 N 1.32131 * 119.99427 * 179.97438 * 3 2 1 5 5 C 1.32153 * 120.00387 * 359.97438 * 4 3 2 6 6 C 1.50691 * 119.99872 * 179.72883 * 5 4 3 7 7 N 1.46503 * 109.47314 * 275.00209 * 6 5 4 8 8 C 1.36935 * 120.00141 * 89.99889 * 7 6 5 9 9 H 1.08002 * 120.00345 * 217.20737 * 8 7 6 10 10 C 1.38811 * 119.99953 * 37.20506 * 8 7 6 11 11 N 1.31621 * 119.99979 * 21.22846 * 10 8 7 12 12 Si 1.86800 * 120.00161 * 201.21944 * 10 8 7 13 13 H 1.48502 * 109.47220 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.46910 * 120.00033 * 12 10 8 15 15 H 1.48502 * 109.47255 * 240.00493 * 12 10 8 16 16 C 1.46499 * 119.99905 * 270.00388 * 7 6 5 17 17 C 1.53002 * 109.47348 * 114.98126 * 16 7 6 18 18 C 1.53004 * 109.47376 * 234.98068 * 16 7 6 19 19 C 1.38343 * 119.99819 * 0.02562 * 5 4 3 20 20 N 1.32122 * 119.99984 * 179.97438 * 2 1 3 21 21 H 1.09003 * 109.47256 * 90.00645 * 1 2 3 22 22 H 1.09001 * 109.47122 * 210.00194 * 1 2 3 23 23 H 1.08991 * 109.47539 * 330.00230 * 1 2 3 24 24 H 1.08001 * 120.00513 * 359.97438 * 3 2 1 25 25 H 1.09002 * 109.47754 * 34.99951 * 6 5 4 26 26 H 1.09001 * 109.47539 * 155.00309 * 6 5 4 27 27 H 0.96994 * 119.99957 * 180.02562 * 11 10 8 28 28 H 1.09002 * 109.47423 * 354.98268 * 16 7 6 29 29 H 1.08998 * 109.46949 * 63.07248 * 17 16 7 30 30 H 1.09002 * 109.47381 * 183.07008 * 17 16 7 31 31 H 1.08999 * 109.47111 * 303.07280 * 17 16 7 32 32 H 1.09003 * 109.47072 * 61.69655 * 18 16 7 33 33 H 1.08996 * 109.47323 * 181.69933 * 18 16 7 34 34 H 1.09005 * 109.46733 * 301.70342 * 18 16 7 35 35 H 1.07999 * 119.99686 * 179.97438 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1985 0.0000 4 7 3.5202 1.1984 0.0005 5 6 4.1809 0.0539 0.0015 6 6 5.6878 0.0539 -0.0041 7 7 6.1711 0.1701 -1.3822 8 6 6.3973 1.4061 -1.9265 9 1 6.1653 1.5895 -2.9652 10 6 6.9248 2.4235 -1.1431 11 7 7.5869 2.1315 -0.0437 12 14 6.6952 4.2068 -1.6494 13 1 5.9202 4.2663 -2.9148 14 1 5.9588 4.9330 -0.5838 15 1 8.0237 4.8389 -1.8520 16 6 6.4123 -1.0360 -2.1780 17 6 5.4360 -1.0737 -3.3555 18 6 7.8481 -1.0198 -2.7064 19 6 3.4892 -1.1442 0.0015 20 7 2.1676 -1.1442 0.0005 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8899 0.5137 24 1 1.6589 2.1338 -0.0004 25 1 6.0535 0.8975 0.5815 26 1 6.0529 -0.8762 0.4317 27 1 7.9552 2.8424 0.5039 28 1 6.2643 -1.9181 -1.5550 29 1 5.6207 -0.2204 -4.0081 30 1 5.5786 -1.9975 -3.9163 31 1 4.4133 -1.0302 -2.9811 32 1 8.5440 -1.0234 -1.8674 33 1 8.0182 -1.9021 -3.3233 34 1 8.0050 -0.1223 -3.3047 35 1 4.0292 -2.0795 0.0020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695654310.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:41 Heat of formation + Delta-G solvation = 39.493119 kcal Electronic energy + Delta-G solvation = -16995.026582 eV Core-core repulsion = 14413.859493 eV Total energy + Delta-G solvation = -2581.167089 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.87532 -38.33254 -35.40595 -34.25161 -33.87793 -31.77915 -29.44624 -27.77407 -26.85613 -25.41607 -24.86744 -22.65055 -21.33756 -18.50223 -18.38138 -17.02065 -16.78164 -16.41665 -16.23971 -15.66824 -15.40437 -14.64739 -14.31677 -13.75026 -13.61602 -13.40515 -13.24016 -13.12579 -13.03837 -12.90799 -12.66892 -12.37827 -12.32548 -12.14180 -11.92383 -11.84100 -11.74042 -11.33928 -10.49210 -9.85272 -9.79372 -8.54676 -7.80664 -5.39095 -0.00978 0.36369 1.42060 1.47329 1.53688 2.51525 2.85376 3.25772 3.34121 3.52953 3.70065 3.76374 4.02950 4.29623 4.33081 4.47709 4.57539 4.65465 4.72177 4.80972 4.90400 4.93416 4.94187 5.13193 5.14717 5.16160 5.18100 5.55258 5.61155 5.67245 5.68291 5.79672 6.47491 6.57781 7.10903 7.19482 7.88242 8.38433 9.16250 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.021049 B = 0.010043 C = 0.007825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.925216 B = 2787.438674 C = 3577.615625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.049 3.951 3 C 0.038 3.962 4 N -0.457 5.457 5 C 0.068 3.932 6 C 0.188 3.812 7 N -0.578 5.578 8 C -0.241 4.241 9 H 0.044 0.956 10 C -0.019 4.019 11 N -0.907 5.907 12 Si 0.942 3.058 13 H -0.277 1.277 14 H -0.293 1.293 15 H -0.290 1.290 16 C 0.154 3.846 17 C -0.141 4.141 18 C -0.134 4.134 19 C 0.045 3.955 20 N -0.456 5.456 21 H 0.088 0.912 22 H 0.080 0.920 23 H 0.099 0.901 24 H 0.183 0.817 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.250 0.750 28 H 0.068 0.932 29 H 0.033 0.967 30 H 0.072 0.928 31 H 0.026 0.974 32 H 0.033 0.967 33 H 0.068 0.932 34 H 0.034 0.966 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.092 -6.205 -0.575 11.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.123 4.123 4 N -0.173 5.173 5 C -0.073 4.073 6 C 0.061 3.939 7 N -0.298 5.298 8 C -0.372 4.372 9 H 0.061 0.939 10 C -0.217 4.217 11 N -0.551 5.551 12 Si 0.771 3.229 13 H -0.202 1.202 14 H -0.220 1.220 15 H -0.217 1.217 16 C 0.048 3.952 17 C -0.200 4.200 18 C -0.193 4.193 19 C -0.115 4.115 20 N -0.172 5.172 21 H 0.106 0.894 22 H 0.099 0.901 23 H 0.118 0.882 24 H 0.200 0.800 25 H 0.096 0.904 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -9.944 -6.121 -0.486 11.687 hybrid contribution 0.191 1.329 -0.157 1.352 sum -9.753 -4.792 -0.643 10.886 Atomic orbital electron populations 1.20690 0.85042 1.04748 1.04078 1.22809 1.00010 0.89230 0.97140 1.24130 0.90615 1.00369 0.97174 1.68380 1.09358 1.31185 1.08360 1.23689 1.00820 0.89169 0.93663 1.19799 0.83862 1.01786 0.88485 1.43956 1.73048 1.01823 1.10932 1.18819 1.34491 0.88423 0.95469 0.93861 1.25527 0.96724 1.01119 0.98314 1.70046 1.35955 1.31816 1.17300 0.85628 0.76927 0.82757 0.77554 1.20180 1.21993 1.21713 1.20702 0.93500 0.88684 0.92280 1.22041 0.98294 1.00746 0.98901 1.21904 0.97051 1.00394 0.99932 1.23686 0.90596 0.99414 0.97792 1.68267 1.08777 1.30030 1.10080 0.89358 0.90139 0.88246 0.79974 0.90446 0.91964 0.94087 0.91364 0.94815 0.90931 0.95429 0.94800 0.91302 0.94644 0.80465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.70 10.19 71.23 0.73 -0.97 16 2 C 0.05 1.49 6.79 42.55 0.29 1.78 16 3 C 0.04 1.30 10.88 84.68 0.92 2.22 16 4 N -0.46 -19.91 10.42 -183.30 -1.91 -21.82 16 5 C 0.07 2.87 6.37 42.53 0.27 3.15 16 6 C 0.19 8.70 5.61 85.63 0.48 9.18 16 7 N -0.58 -27.59 2.35 -682.34 -1.60 -29.20 16 8 C -0.24 -13.03 8.04 84.03 0.68 -12.36 16 9 H 0.04 2.43 7.13 -2.91 -0.02 2.41 16 10 C -0.02 -1.05 4.96 84.86 0.42 -0.63 16 11 N -0.91 -52.25 11.43 21.65 0.25 -52.00 16 12 Si 0.94 46.08 29.60 68.60 2.03 48.11 16 13 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 14 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 15 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 16 C 0.15 6.06 3.37 44.99 0.15 6.21 16 17 C -0.14 -5.09 9.19 71.98 0.66 -4.43 16 18 C -0.13 -5.13 9.11 71.98 0.66 -4.47 16 19 C 0.05 1.62 10.86 84.67 0.92 2.54 16 20 N -0.46 -15.39 10.42 -183.30 -1.91 -17.31 16 21 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 22 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.10 1.42 8.09 -2.39 -0.02 1.40 16 24 H 0.18 4.88 8.06 -2.91 -0.02 4.86 16 25 H 0.08 4.22 5.48 -2.39 -0.01 4.21 16 26 H 0.06 2.57 7.79 -2.39 -0.02 2.55 16 27 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 28 H 0.07 2.39 7.77 -2.39 -0.02 2.38 16 29 H 0.03 1.32 7.31 -2.39 -0.02 1.30 16 30 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.03 1.50 7.50 -2.38 -0.02 1.48 16 35 H 0.18 5.35 8.06 -2.91 -0.02 5.33 16 Total: -1.00 -65.11 295.27 4.09 -61.03 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 1.06 Total: 8.97 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 6.17 Total: 2.22 kcal Atomic # 7 Polarization: -115.15 SS G_CDS: -5.18 Total: -120.33 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -65.11 4.09 -61.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695654310.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.519 kcal (2) G-P(sol) polarization free energy of solvation -65.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds