Wall clock time and date at job start Mon Mar 30 2020 03:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38615 * 120.07525 * 2 1 4 4 C 1.38869 * 117.96829 * 179.97438 * 3 2 1 5 5 C 1.38612 * 117.97142 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.08025 * 179.97438 * 5 4 3 7 7 N 1.46906 * 109.46967 * 95.02263 * 6 5 4 8 8 C 1.46904 * 110.99992 * 180.02562 * 7 6 5 9 9 H 1.08995 * 109.46949 * 35.00114 * 8 7 6 10 10 C 1.53002 * 109.46841 * 275.00324 * 8 7 6 11 11 C 1.52998 * 109.46909 * 155.00348 * 8 7 6 12 12 C 1.50700 * 109.47048 * 294.99791 * 11 8 7 13 13 H 1.08006 * 120.00110 * 0.02562 * 12 11 8 14 14 C 1.37881 * 120.00065 * 179.97438 * 12 11 8 15 15 N 1.31510 * 120.00067 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99651 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47217 * 89.99817 * 16 14 12 18 18 H 1.48498 * 109.46935 * 209.99771 * 16 14 12 19 19 H 1.48497 * 109.47265 * 329.99677 * 16 14 12 20 20 N 1.31929 * 119.84570 * 0.02562 * 5 4 3 21 21 N 1.28352 * 122.18202 * 359.97438 * 20 5 4 22 22 H 1.08999 * 109.47017 * 89.99777 * 1 2 3 23 23 H 1.09001 * 109.47006 * 210.00050 * 1 2 3 24 24 H 1.08999 * 109.47224 * 330.00021 * 1 2 3 25 25 H 1.08002 * 121.01146 * 359.71123 * 3 2 1 26 26 H 1.08006 * 121.01661 * 180.02562 * 4 3 2 27 27 H 1.08995 * 109.47525 * 215.02380 * 6 5 4 28 28 H 1.09005 * 109.47272 * 335.02729 * 6 5 4 29 29 H 1.00906 * 110.99573 * 56.04609 * 7 6 5 30 30 H 1.08999 * 109.46502 * 179.97438 * 10 8 7 31 31 H 1.08995 * 109.47177 * 299.99650 * 10 8 7 32 32 H 1.08999 * 109.47375 * 60.00065 * 10 8 7 33 33 H 1.09004 * 109.47176 * 54.99828 * 11 8 7 34 34 H 1.08994 * 109.46970 * 174.99915 * 11 8 7 35 35 H 0.96995 * 119.99836 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2017 1.1995 0.0000 4 6 3.5894 1.1485 0.0005 5 6 4.1941 -0.0988 0.0005 6 6 5.6970 -0.2096 0.0005 7 7 6.1764 -0.3665 1.3802 8 6 7.6408 -0.4773 1.4194 9 1 8.0737 0.1529 0.6425 10 6 8.0486 -1.9327 1.1816 11 6 8.1502 -0.0220 2.7883 12 6 7.8563 1.4447 2.9712 13 1 7.3558 1.9968 2.1894 14 6 8.2254 2.0816 4.1371 15 7 7.9685 3.3615 4.2969 16 14 9.0905 1.1265 5.4895 17 1 10.5592 1.1931 5.2808 18 1 8.7506 1.7183 6.8084 19 1 8.6492 -0.2909 5.4544 20 7 3.4508 -1.1888 -0.0005 21 7 2.1682 -1.1416 -0.0011 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6795 2.1449 -0.0047 26 1 4.1796 2.0530 0.0010 27 1 5.9976 -1.0755 -0.5893 28 1 6.1279 0.6928 -0.4333 29 1 5.7413 -1.1603 1.8261 30 1 9.1351 -2.0147 1.2102 31 1 7.6157 -2.5629 1.9585 32 1 7.6856 -2.2571 0.2064 33 1 7.6500 -0.5931 3.5705 34 1 9.2258 -0.1873 2.8491 35 1 8.2285 3.8096 5.1169 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695836966.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:21 Heat of formation + Delta-G solvation = 22.362706 kcal Electronic energy + Delta-G solvation = -16043.105308 eV Core-core repulsion = 13461.195389 eV Total energy + Delta-G solvation = -2581.909919 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.02851 -38.46559 -35.48760 -34.61022 -34.21705 -32.07234 -29.70878 -28.94505 -26.63802 -24.89013 -24.29456 -23.13341 -21.42220 -18.75377 -18.45139 -17.36719 -16.69536 -16.52435 -16.11218 -15.81567 -15.48850 -14.95500 -14.28858 -14.08359 -14.04378 -13.81806 -13.62990 -13.41384 -13.32771 -13.13234 -12.79744 -12.42538 -12.22202 -11.84283 -11.61277 -11.42301 -11.17294 -11.11395 -10.66176 -10.61824 -10.53687 -9.11552 -8.15997 -6.13717 -0.13272 -0.07507 1.38006 1.40657 1.51238 2.43940 2.48861 2.96715 3.18585 3.44651 3.59237 3.65299 3.76109 4.08506 4.14553 4.18279 4.42460 4.46452 4.58721 4.63114 4.66777 4.76815 4.91353 4.95404 5.06533 5.14391 5.20436 5.25938 5.29553 5.39451 5.51392 5.77724 6.24989 6.46813 6.58376 6.93405 7.46802 7.73279 9.01127 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.028085 B = 0.005720 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.747965 B = 4893.764722 C = 5465.474384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.056 3.944 3 C -0.112 4.112 4 C -0.105 4.105 5 C 0.063 3.937 6 C 0.121 3.879 7 N -0.678 5.678 8 C 0.103 3.897 9 H 0.068 0.932 10 C -0.173 4.173 11 C -0.004 4.004 12 C -0.488 4.488 13 H 0.040 0.960 14 C -0.003 4.003 15 N -0.958 5.958 16 Si 0.942 3.058 17 H -0.268 1.268 18 H -0.292 1.292 19 H -0.253 1.253 20 N -0.269 5.269 21 N -0.282 5.282 22 H 0.099 0.901 23 H 0.077 0.923 24 H 0.103 0.897 25 H 0.187 0.813 26 H 0.161 0.839 27 H 0.055 0.945 28 H 0.092 0.908 29 H 0.336 0.664 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.011 0.989 34 H 0.023 0.977 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.014 -6.511 -10.143 16.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.090 4.090 3 C -0.141 4.141 4 C -0.134 4.134 5 C -0.083 4.083 6 C -0.010 4.010 7 N -0.309 5.309 8 C -0.006 4.006 9 H 0.086 0.914 10 C -0.232 4.232 11 C -0.042 4.042 12 C -0.526 4.526 13 H 0.058 0.942 14 C -0.198 4.198 15 N -0.601 5.601 16 Si 0.767 3.233 17 H -0.193 1.193 18 H -0.218 1.218 19 H -0.177 1.177 20 N -0.110 5.110 21 N -0.124 5.124 22 H 0.117 0.883 23 H 0.096 0.904 24 H 0.122 0.878 25 H 0.205 0.795 26 H 0.179 0.821 27 H 0.073 0.927 28 H 0.110 0.890 29 H 0.154 0.846 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.030 0.970 34 H 0.041 0.959 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.047 -7.390 -9.909 16.578 hybrid contribution 0.718 0.751 0.553 1.177 sum -10.329 -6.639 -9.356 15.437 Atomic orbital electron populations 1.20793 0.84698 1.05053 1.04786 1.23526 1.00890 0.90198 0.94346 1.22740 0.94012 1.01148 0.96203 1.22611 0.96374 0.99416 0.95008 1.22879 0.98521 0.91165 0.95770 1.20716 0.86749 1.02386 0.91145 1.60436 1.06820 1.48272 1.15343 1.21391 0.86228 0.94947 0.98036 0.91375 1.22448 1.02604 0.96551 1.01573 1.19588 0.95417 0.94819 0.94364 1.21316 1.35182 0.94391 1.01709 0.94211 1.25901 0.97247 0.95606 1.01006 1.70063 1.50800 1.11427 1.27772 0.85789 0.79313 0.79901 0.78334 1.19329 1.21800 1.17684 1.72789 1.00033 1.28048 1.10123 1.72825 1.01436 1.26767 1.11345 0.88266 0.90389 0.87827 0.79549 0.82124 0.92742 0.88961 0.84640 0.91285 0.92714 0.91915 0.97026 0.95927 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 10.20 71.24 0.73 -0.62 16 2 C 0.06 1.32 6.87 42.64 0.29 1.61 16 3 C -0.11 -2.43 9.88 22.51 0.22 -2.20 16 4 C -0.11 -2.83 9.85 22.51 0.22 -2.60 16 5 C 0.06 1.95 6.38 42.63 0.27 2.22 16 6 C 0.12 3.75 5.82 85.56 0.50 4.24 16 7 N -0.68 -25.17 5.95 -495.56 -2.95 -28.12 16 8 C 0.10 3.87 2.53 44.91 0.11 3.98 16 9 H 0.07 2.59 7.80 -2.39 -0.02 2.57 16 10 C -0.17 -5.09 9.16 71.98 0.66 -4.43 16 11 C 0.00 -0.19 3.72 29.85 0.11 -0.08 16 12 C -0.49 -27.80 9.39 25.60 0.24 -27.56 16 13 H 0.04 2.49 7.99 -2.91 -0.02 2.47 16 14 C 0.00 -0.17 5.47 84.66 0.46 0.29 16 15 N -0.96 -60.69 13.96 21.45 0.30 -60.39 16 16 Si 0.94 45.22 27.47 68.60 1.88 47.10 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 19 H -0.25 -11.44 6.54 99.48 0.65 -10.78 16 20 N -0.27 -9.05 11.43 -47.63 -0.54 -9.60 16 21 N -0.28 -8.81 11.43 -47.63 -0.54 -9.35 16 22 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.10 0.95 8.09 -2.39 -0.02 0.93 16 25 H 0.19 2.43 8.06 -2.91 -0.02 2.41 16 26 H 0.16 3.97 8.06 -2.91 -0.02 3.95 16 27 H 0.05 1.56 7.44 -2.39 -0.02 1.54 16 28 H 0.09 2.76 7.97 -2.38 -0.02 2.74 16 29 H 0.34 12.32 8.47 -89.69 -0.76 11.56 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.05 1.59 8.13 -2.39 -0.02 1.57 16 32 H 0.06 1.62 7.45 -2.39 -0.02 1.61 16 33 H 0.01 0.54 7.20 -2.38 -0.02 0.53 16 34 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 35 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -71.69 297.20 2.23 -69.46 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.26 Total: 16.02 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 3.82 Total: -25.13 kcal Atomic # 7 Polarization: -103.71 SS G_CDS: -3.74 Total: -107.45 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.88 Total: 47.10 kcal Total: -71.69 2.23 -69.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695836966.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.825 kcal (2) G-P(sol) polarization free energy of solvation -71.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds