Wall clock time and date at job start Mon Mar 30 2020 03:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32154 * 119.99701 * 2 1 4 4 C 1.32128 * 120.00015 * 179.97438 * 3 2 1 5 5 C 1.38387 * 119.99334 * 359.97438 * 4 3 2 6 6 N 1.32124 * 120.00199 * 0.02562 * 5 4 3 7 7 C 1.32154 * 119.99831 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99766 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.46871 * 90.00287 * 8 7 6 10 10 C 1.46899 * 111.00220 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.47075 * 35.00088 * 10 9 8 12 12 C 1.52997 * 109.47160 * 274.99964 * 10 9 8 13 13 C 1.53005 * 109.47276 * 155.00167 * 10 9 8 14 14 C 1.50705 * 109.47010 * 294.99776 * 13 10 9 15 15 H 1.07996 * 119.99586 * 0.02562 * 14 13 10 16 16 C 1.37872 * 120.00097 * 179.97438 * 14 13 10 17 17 N 1.31514 * 119.99857 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00012 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46746 * 60.00433 * 18 16 14 20 20 H 1.48500 * 109.47010 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47461 * 300.00302 * 18 16 14 22 22 H 1.09000 * 109.47232 * 270.02233 * 1 2 3 23 23 H 1.09001 * 109.47224 * 30.01991 * 1 2 3 24 24 H 1.09001 * 109.47279 * 150.01724 * 1 2 3 25 25 H 1.08001 * 120.00278 * 180.02562 * 4 3 2 26 26 H 1.08009 * 119.99684 * 180.29893 * 5 4 3 27 27 H 1.08999 * 109.47522 * 209.99822 * 8 7 6 28 28 H 1.09005 * 109.47476 * 330.00757 * 8 7 6 29 29 H 1.00903 * 111.00015 * 303.95262 * 9 8 7 30 30 H 1.08998 * 109.47228 * 300.00031 * 12 10 9 31 31 H 1.09009 * 109.47068 * 59.99832 * 12 10 9 32 32 H 1.08996 * 109.47364 * 179.97438 * 12 10 9 33 33 H 1.08999 * 109.47258 * 54.99788 * 13 10 9 34 34 H 1.08998 * 109.47149 * 175.00356 * 13 10 9 35 35 H 0.97002 * 119.99880 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1677 1.1445 0.0000 4 6 3.4890 1.1446 0.0005 5 6 4.1809 -0.0539 0.0016 6 7 3.5202 -1.1981 0.0016 7 6 2.1987 -1.1980 0.0000 8 6 1.4452 -2.5031 -0.0005 9 7 1.1987 -2.9268 1.3843 10 6 0.4649 -4.1988 1.4230 11 1 0.7839 -4.8277 0.5919 12 6 -1.0361 -3.9254 1.3089 13 6 0.7539 -4.9143 2.7442 14 6 2.2115 -5.2930 2.8020 15 1 2.8662 -5.0474 1.9790 16 6 2.7093 -5.9519 3.9061 17 7 1.9121 -6.2504 4.9085 18 14 4.5158 -6.4219 3.9774 19 1 5.3499 -5.1968 3.8844 20 1 4.7963 -7.1162 5.2597 21 1 4.8370 -7.3266 2.8446 22 1 -0.3634 0.0004 1.0277 23 1 -0.3634 0.8898 -0.5141 24 1 -0.3634 -0.8901 -0.5136 25 1 4.0290 2.0799 0.0009 26 1 5.2609 -0.0539 0.0069 27 1 0.4933 -2.3729 -0.5155 28 1 2.0349 -3.2630 -0.5134 29 1 2.0625 -2.9921 1.9016 30 1 -1.3551 -3.2965 2.1401 31 1 -1.2420 -3.4156 0.3677 32 1 -1.5805 -4.8692 1.3372 33 1 0.5177 -4.2508 3.5761 34 1 0.1420 -5.8138 2.8117 35 1 2.2624 -6.7137 5.6854 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699896978.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:32 Heat of formation + Delta-G solvation = 32.385769 kcal Electronic energy + Delta-G solvation = -16358.149744 eV Core-core repulsion = 13776.674458 eV Total energy + Delta-G solvation = -2581.475287 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.06878 -36.80574 -34.42961 -33.73538 -32.37860 -30.10269 -27.96356 -27.39548 -25.79763 -23.17822 -22.81046 -21.85018 -19.47982 -17.75302 -16.42694 -16.32367 -15.60921 -15.30905 -14.77305 -14.43986 -14.03611 -13.46767 -12.93714 -12.83787 -12.66654 -12.44302 -11.84224 -11.64780 -11.57362 -11.40599 -11.24435 -11.01437 -10.88408 -10.67630 -10.51456 -10.21864 -9.32823 -9.11185 -8.96058 -8.90480 -8.38632 -7.74213 -6.02179 -4.05228 0.85103 1.23107 3.32768 3.36989 3.40249 3.72220 4.10209 4.24131 4.44684 4.55992 4.78611 5.06836 5.16626 5.26511 5.36677 5.43850 5.57519 5.69645 5.87076 5.94601 5.97569 6.08260 6.17666 6.26565 6.48434 6.51019 6.89551 6.90905 7.37647 7.46517 7.62996 7.89963 7.95619 7.98928 8.18060 8.36706 9.00757 9.59293 11.08609 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023950 B = 0.006894 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.804896 B = 4060.295050 C = 4956.880869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.097 3.903 3 N -0.445 5.445 4 C 0.043 3.957 5 C 0.040 3.960 6 N -0.430 5.430 7 C 0.095 3.905 8 C 0.106 3.894 9 N -0.674 5.674 10 C 0.087 3.913 11 H 0.032 0.968 12 C -0.136 4.136 13 C 0.021 3.979 14 C -0.525 4.525 15 H 0.052 0.948 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.889 3.111 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.277 1.277 22 H 0.089 0.911 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.166 0.834 26 H 0.166 0.834 27 H 0.087 0.913 28 H 0.046 0.954 29 H 0.359 0.641 30 H 0.056 0.944 31 H 0.037 0.963 32 H 0.049 0.951 33 H 0.026 0.974 34 H 0.023 0.977 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.618 11.854 -10.464 15.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.044 4.044 3 N -0.161 5.161 4 C -0.117 4.117 5 C -0.119 4.119 6 N -0.145 5.145 7 C -0.047 4.047 8 C -0.025 4.025 9 N -0.309 5.309 10 C -0.022 4.022 11 H 0.050 0.950 12 C -0.194 4.194 13 C -0.016 4.016 14 C -0.563 4.563 15 H 0.070 0.930 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.717 3.283 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 H 0.107 0.893 23 H 0.091 0.909 24 H 0.100 0.900 25 H 0.183 0.817 26 H 0.183 0.817 27 H 0.105 0.895 28 H 0.064 0.936 29 H 0.180 0.820 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.044 0.956 34 H 0.041 0.959 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.183 12.131 -10.208 15.898 hybrid contribution 2.027 -0.844 -0.073 2.197 sum 0.844 11.287 -10.281 15.291 Atomic orbital electron populations 1.20729 0.87622 1.03114 1.04104 1.22081 0.98512 0.88749 0.95055 1.68276 1.08910 1.29350 1.09542 1.23671 0.90923 0.99662 0.97452 1.23711 1.01784 0.88837 0.97592 1.68312 1.08520 1.29837 1.07839 1.22154 0.90224 0.96831 0.95473 1.20858 0.97563 0.90409 0.93625 1.60667 1.28151 1.32837 1.09286 1.21659 0.92023 0.88029 1.00451 0.94958 1.21808 0.96619 1.00544 1.00390 1.19276 0.96441 0.95147 0.90757 1.21151 0.94692 1.37608 1.02893 0.92967 1.24972 0.97577 0.95804 0.95672 1.69949 1.35136 1.40807 1.07154 0.86697 0.85632 0.78747 0.77190 1.20198 1.21289 1.20311 0.89265 0.90941 0.89983 0.81723 0.81685 0.89514 0.93598 0.81971 0.92530 0.94439 0.93154 0.95603 0.95876 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.15 9.79 36.01 0.35 -0.80 16 2 C 0.10 1.41 6.78 -82.42 -0.56 0.85 16 3 N -0.45 -6.33 10.42 -9.29 -0.10 -6.42 16 4 C 0.04 0.51 11.23 -17.37 -0.19 0.32 16 5 C 0.04 0.52 11.23 -17.37 -0.19 0.33 16 6 N -0.43 -7.01 10.42 -9.29 -0.10 -7.11 16 7 C 0.09 1.50 6.30 -82.42 -0.52 0.98 16 8 C 0.11 1.70 5.38 -4.98 -0.03 1.67 16 9 N -0.67 -12.84 6.30 -107.99 -0.68 -13.52 16 10 C 0.09 1.76 2.59 -67.71 -0.18 1.59 16 11 H 0.03 0.67 7.80 -51.93 -0.40 0.26 16 12 C -0.14 -2.29 9.41 37.16 0.35 -1.94 16 13 C 0.02 0.53 4.57 -27.88 -0.13 0.40 16 14 C -0.53 -14.51 8.12 -34.44 -0.28 -14.79 16 15 H 0.05 1.42 7.49 -52.49 -0.39 1.03 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 18 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.08 0.87 5.95 -51.93 -0.31 0.56 16 25 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 26 H 0.17 1.56 8.06 -52.48 -0.42 1.13 16 27 H 0.09 1.19 5.25 -51.93 -0.27 0.92 16 28 H 0.05 0.78 8.05 -51.93 -0.42 0.36 16 29 H 0.36 7.85 7.20 -39.29 -0.28 7.57 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.04 0.53 7.45 -51.92 -0.39 0.15 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 294.61 15.07 4.44 4.44 Total: -1.00 -31.09 294.61 -7.18 -38.27 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -4.98 Total: 3.18 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -1.47 Total: -9.73 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.14 Total: -52.90 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.09 -7.18 -38.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699896978.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.653 kcal (2) G-P(sol) polarization free energy of solvation -31.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds