Wall clock time and date at job start Mon Mar 30 2020 03:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32154 * 119.99701 * 2 1 4 4 C 1.32128 * 120.00015 * 179.97438 * 3 2 1 5 5 C 1.38387 * 119.99334 * 359.97438 * 4 3 2 6 6 N 1.32124 * 120.00199 * 0.02562 * 5 4 3 7 7 C 1.32154 * 119.99831 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99766 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.46871 * 90.00287 * 8 7 6 10 10 C 1.46899 * 111.00220 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.47075 * 35.00088 * 10 9 8 12 12 C 1.52997 * 109.47160 * 274.99964 * 10 9 8 13 13 C 1.53005 * 109.47276 * 155.00167 * 10 9 8 14 14 C 1.50705 * 109.47010 * 294.99776 * 13 10 9 15 15 H 1.07996 * 119.99586 * 0.02562 * 14 13 10 16 16 C 1.37872 * 120.00097 * 179.97438 * 14 13 10 17 17 N 1.31514 * 119.99857 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00012 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46746 * 60.00433 * 18 16 14 20 20 H 1.48500 * 109.47010 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47461 * 300.00302 * 18 16 14 22 22 H 1.09000 * 109.47232 * 270.02233 * 1 2 3 23 23 H 1.09001 * 109.47224 * 30.01991 * 1 2 3 24 24 H 1.09001 * 109.47279 * 150.01724 * 1 2 3 25 25 H 1.08001 * 120.00278 * 180.02562 * 4 3 2 26 26 H 1.08009 * 119.99684 * 180.29893 * 5 4 3 27 27 H 1.08999 * 109.47522 * 209.99822 * 8 7 6 28 28 H 1.09005 * 109.47476 * 330.00757 * 8 7 6 29 29 H 1.00903 * 111.00015 * 303.95262 * 9 8 7 30 30 H 1.08998 * 109.47228 * 300.00031 * 12 10 9 31 31 H 1.09009 * 109.47068 * 59.99832 * 12 10 9 32 32 H 1.08996 * 109.47364 * 179.97438 * 12 10 9 33 33 H 1.08999 * 109.47258 * 54.99788 * 13 10 9 34 34 H 1.08998 * 109.47149 * 175.00356 * 13 10 9 35 35 H 0.97002 * 119.99880 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1677 1.1445 0.0000 4 6 3.4890 1.1446 0.0005 5 6 4.1809 -0.0539 0.0016 6 7 3.5202 -1.1981 0.0016 7 6 2.1987 -1.1980 0.0000 8 6 1.4452 -2.5031 -0.0005 9 7 1.1987 -2.9268 1.3843 10 6 0.4649 -4.1988 1.4230 11 1 0.7839 -4.8277 0.5919 12 6 -1.0361 -3.9254 1.3089 13 6 0.7539 -4.9143 2.7442 14 6 2.2115 -5.2930 2.8020 15 1 2.8662 -5.0474 1.9790 16 6 2.7093 -5.9519 3.9061 17 7 1.9121 -6.2504 4.9085 18 14 4.5158 -6.4219 3.9774 19 1 5.3499 -5.1968 3.8844 20 1 4.7963 -7.1162 5.2597 21 1 4.8370 -7.3266 2.8446 22 1 -0.3634 0.0004 1.0277 23 1 -0.3634 0.8898 -0.5141 24 1 -0.3634 -0.8901 -0.5136 25 1 4.0290 2.0799 0.0009 26 1 5.2609 -0.0539 0.0069 27 1 0.4933 -2.3729 -0.5155 28 1 2.0349 -3.2630 -0.5134 29 1 2.0625 -2.9921 1.9016 30 1 -1.3551 -3.2965 2.1401 31 1 -1.2420 -3.4156 0.3677 32 1 -1.5805 -4.8692 1.3372 33 1 0.5177 -4.2508 3.5761 34 1 0.1420 -5.8138 2.8117 35 1 2.2624 -6.7137 5.6854 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699896978.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:32 Heat of formation + Delta-G solvation = 10.211500 kcal Electronic energy + Delta-G solvation = -16359.111293 eV Core-core repulsion = 13776.674458 eV Total energy + Delta-G solvation = -2582.436835 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.11385 -38.35242 -35.54579 -35.21779 -34.14738 -31.53320 -29.31689 -28.89681 -27.07728 -25.03781 -23.92139 -23.06170 -21.13933 -18.83196 -18.51150 -17.50100 -16.83969 -16.61053 -16.36701 -15.97066 -15.40382 -14.89043 -14.26712 -14.06794 -13.68002 -13.63778 -13.47774 -13.34276 -13.18810 -12.77369 -12.57743 -12.50868 -12.44938 -12.40211 -11.98567 -11.93401 -11.29886 -11.01865 -10.58631 -10.02810 -9.98726 -9.25413 -8.20878 -6.30735 -0.17309 0.17340 1.37088 1.38856 1.46815 2.38579 2.66336 3.09540 3.13349 3.24655 3.55335 3.61460 3.81542 4.14230 4.28525 4.37338 4.46806 4.57399 4.59913 4.69034 4.75825 4.85928 4.93374 5.06706 5.16294 5.24495 5.37516 5.49960 5.52036 5.54651 5.83998 6.19436 6.31553 6.36867 6.48749 6.84408 6.86880 7.37819 8.90304 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023950 B = 0.006894 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.804896 B = 4060.295050 C = 4956.880869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.089 3.911 3 N -0.462 5.462 4 C 0.054 3.946 5 C 0.035 3.965 6 N -0.465 5.465 7 C 0.069 3.931 8 C 0.112 3.888 9 N -0.672 5.672 10 C 0.095 3.905 11 H 0.028 0.972 12 C -0.127 4.127 13 C 0.027 3.973 14 C -0.535 4.535 15 H 0.052 0.948 16 C 0.007 3.993 17 N -0.928 5.928 18 Si 0.956 3.044 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.270 1.270 22 H 0.084 0.916 23 H 0.087 0.913 24 H 0.092 0.908 25 H 0.207 0.793 26 H 0.197 0.803 27 H 0.113 0.887 28 H 0.032 0.968 29 H 0.339 0.661 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.053 0.947 33 H -0.003 1.003 34 H -0.001 1.001 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.135 13.243 -11.714 17.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.050 4.050 3 N -0.178 5.178 4 C -0.107 4.107 5 C -0.125 4.125 6 N -0.181 5.181 7 C -0.071 4.071 8 C -0.018 4.018 9 N -0.305 5.305 10 C -0.014 4.014 11 H 0.046 0.954 12 C -0.185 4.185 13 C -0.010 4.010 14 C -0.573 4.573 15 H 0.071 0.929 16 C -0.192 4.192 17 N -0.568 5.568 18 Si 0.781 3.219 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.195 1.195 22 H 0.102 0.898 23 H 0.105 0.895 24 H 0.111 0.889 25 H 0.224 0.776 26 H 0.214 0.786 27 H 0.130 0.870 28 H 0.050 0.950 29 H 0.158 0.842 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.016 0.984 34 H 0.018 0.982 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.465 13.516 -11.482 17.741 hybrid contribution 1.852 -1.187 0.296 2.220 sum 1.387 12.329 -11.185 16.704 Atomic orbital electron populations 1.20777 0.86061 1.04389 1.04083 1.22375 0.99676 0.88397 0.94573 1.68375 1.10062 1.29124 1.10239 1.24365 0.90401 1.01068 0.94819 1.24300 1.03299 0.88261 0.96676 1.68245 1.09103 1.31915 1.08825 1.22067 0.90457 0.96950 0.97663 1.20869 0.98833 0.90483 0.91599 1.60702 1.26915 1.31666 1.11185 1.21487 0.94559 0.88257 0.97089 0.95392 1.21721 0.93704 1.01112 1.01986 1.19138 0.95044 0.94065 0.92741 1.21493 0.95876 1.37137 1.02823 0.92946 1.25833 1.02082 0.95887 0.95383 1.70074 1.37162 1.41783 1.07814 0.85641 0.80217 0.78579 0.77459 1.19632 1.20746 1.19472 0.89759 0.89464 0.88922 0.77626 0.78576 0.86959 0.94981 0.84229 0.92977 0.91111 0.92777 0.98448 0.98233 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.06 9.79 71.24 0.70 -1.37 16 2 C 0.09 2.46 6.78 42.53 0.29 2.75 16 3 N -0.46 -12.15 10.42 -183.30 -1.91 -14.06 16 4 C 0.05 1.14 11.23 84.68 0.95 2.09 16 5 C 0.03 0.82 11.23 84.68 0.95 1.77 16 6 N -0.47 -14.77 10.42 -183.30 -1.91 -16.68 16 7 C 0.07 2.13 6.30 42.53 0.27 2.40 16 8 C 0.11 3.52 5.38 85.56 0.46 3.98 16 9 N -0.67 -25.62 6.30 -495.58 -3.12 -28.74 16 10 C 0.10 3.86 2.59 44.92 0.12 3.98 16 11 H 0.03 1.15 7.80 -2.39 -0.02 1.14 16 12 C -0.13 -4.14 9.41 71.98 0.68 -3.46 16 13 C 0.03 1.43 4.57 29.85 0.14 1.57 16 14 C -0.54 -30.18 8.12 25.60 0.21 -29.97 16 15 H 0.05 2.89 7.49 -2.91 -0.02 2.87 16 16 C 0.01 0.38 5.46 84.65 0.46 0.84 16 17 N -0.93 -56.53 13.29 21.45 0.28 -56.24 16 18 Si 0.96 44.99 29.54 68.60 2.03 47.01 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.09 1.74 5.95 -2.39 -0.01 1.73 16 25 H 0.21 2.45 8.06 -2.91 -0.02 2.43 16 26 H 0.20 3.13 8.06 -2.91 -0.02 3.10 16 27 H 0.11 2.87 5.25 -2.39 -0.01 2.85 16 28 H 0.03 1.09 8.05 -2.38 -0.02 1.07 16 29 H 0.34 15.16 7.20 -89.69 -0.65 14.52 16 30 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.07 1.83 7.45 -2.38 -0.02 1.81 16 32 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.00 -0.17 8.14 -2.39 -0.02 -0.18 16 34 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 35 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -68.19 294.61 1.02 -67.16 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.44 Total: 16.97 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: 5.22 Total: -15.43 kcal Atomic # 7 Polarization: -109.06 SS G_CDS: -6.66 Total: -115.72 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -68.19 1.02 -67.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699896978.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.376 kcal (2) G-P(sol) polarization free energy of solvation -68.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds