Wall clock time and date at job start Mon Mar 30 2020 03:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46804 * 2 1 4 4 N 1.46901 * 109.47400 * 239.99483 * 2 1 3 5 5 C 1.53009 * 109.46829 * 119.99317 * 2 1 3 6 6 O 1.42896 * 109.47021 * 55.00637 * 5 2 1 7 7 C 1.42903 * 113.99999 * 180.02562 * 6 5 2 8 8 C 1.50693 * 109.47162 * 179.97438 * 7 6 5 9 9 C 1.38632 * 119.75309 * 269.72566 * 8 7 6 10 10 C 1.37613 * 120.24892 * 179.72426 * 9 8 7 11 11 C 1.40721 * 119.74621 * 0.57027 * 10 9 8 12 12 C 1.41397 * 120.24351 * 179.68353 * 11 10 9 13 13 H 1.07998 * 119.99424 * 204.39910 * 12 11 10 14 14 C 1.39941 * 120.00312 * 24.40322 * 12 11 10 15 15 N 1.30825 * 120.00000 * 17.85552 * 14 12 11 16 16 Si 1.86805 * 120.00124 * 197.85800 * 14 12 11 17 17 H 1.48502 * 109.46876 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.46995 * 119.99622 * 16 14 12 19 19 H 1.48492 * 109.46850 * 239.99832 * 16 14 12 20 20 C 1.40711 * 119.51020 * 359.70374 * 11 10 9 21 21 C 1.37625 * 119.74582 * 0.02562 * 20 11 10 22 22 H 1.08995 * 109.47123 * 300.00236 * 1 2 3 23 23 H 1.08993 * 109.46730 * 60.01245 * 1 2 3 24 24 H 1.09008 * 109.46671 * 180.02562 * 1 2 3 25 25 H 1.00896 * 110.99571 * 60.00027 * 4 2 1 26 26 H 1.00899 * 110.99684 * 183.95749 * 4 2 1 27 27 H 1.09001 * 109.46792 * 175.00593 * 5 2 1 28 28 H 1.08995 * 109.47025 * 295.00262 * 5 2 1 29 29 H 1.09002 * 109.46561 * 299.99820 * 7 6 5 30 30 H 1.09000 * 109.46864 * 59.99357 * 7 6 5 31 31 H 1.08005 * 119.87202 * 359.97438 * 9 8 7 32 32 H 1.08006 * 120.12985 * 180.28082 * 10 9 8 33 33 H 0.96997 * 119.99997 * 180.02562 * 15 14 12 34 34 H 1.08000 * 120.12874 * 179.97438 * 20 11 10 35 35 H 1.08001 * 119.87611 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6926 -1.1994 5 6 2.0400 -0.7212 1.2494 6 8 1.4703 -2.0303 1.3096 7 6 1.8836 -2.7923 2.4457 8 6 1.2254 -4.1474 2.4080 9 6 -0.0020 -4.3334 3.0251 10 6 -0.6148 -5.5651 2.9921 11 6 0.0147 -6.6410 2.3391 12 6 -0.6024 -7.9127 2.3046 13 1 -0.0019 -8.8009 2.1752 14 6 -1.9913 -8.0203 2.4380 15 7 -2.7501 -6.9722 2.2455 16 14 -2.7618 -9.6607 2.8910 17 1 -1.6949 -10.6809 3.0523 18 1 -3.5104 -9.5207 4.1659 19 1 -3.6926 -10.0844 1.8144 20 6 1.2631 -6.4420 1.7211 21 6 1.8549 -5.2001 1.7618 22 1 -0.3633 0.5138 0.8899 23 1 -0.3632 0.5136 -0.8901 24 1 -0.3633 -1.0278 0.0005 25 1 1.6963 -0.2351 -2.0384 26 1 3.0263 -0.7627 -1.1907 27 1 3.1263 -0.7993 1.2058 28 1 1.7516 -0.1581 2.1370 29 1 2.9667 -2.9134 2.4273 30 1 1.5916 -2.2721 3.3579 31 1 -0.4808 -3.5075 3.5301 32 1 -1.5732 -5.7068 3.4696 33 1 -3.7128 -7.0467 2.3383 34 1 1.7554 -7.2608 1.2175 35 1 2.8133 -5.0451 1.2886 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710359568.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:41 Heat of formation + Delta-G solvation = -39.556648 kcal Electronic energy + Delta-G solvation = -16016.777524 eV Core-core repulsion = 13399.889829 eV Total energy + Delta-G solvation = -2616.887695 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.16936 -37.17956 -35.07895 -33.61163 -30.50023 -29.22911 -29.00905 -27.03136 -25.79743 -23.38671 -20.92906 -20.37428 -19.87486 -17.25583 -16.39066 -15.89207 -15.56557 -15.12923 -14.55213 -14.41051 -13.88842 -13.56976 -13.05224 -12.66791 -12.20524 -11.88671 -11.86252 -11.57878 -11.49027 -11.37565 -11.07977 -10.92165 -10.58860 -10.53213 -10.20741 -9.54665 -9.35335 -9.13223 -8.98936 -8.56954 -7.40137 -7.27883 -6.72947 -4.32120 2.73829 3.09297 3.14398 3.15074 3.17673 3.95553 4.25531 4.54398 4.75164 5.03468 5.14961 5.44657 5.57362 5.75473 5.78727 5.90259 5.92782 5.98418 6.01008 6.25007 6.44283 6.46842 6.58055 7.00408 7.11061 7.20729 7.34255 7.42377 7.49587 7.66800 7.80732 7.95835 8.09878 8.18667 8.34377 8.68501 8.93159 9.02172 10.21341 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.040042 B = 0.005014 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.098872 B = 5583.400641 C = 5814.640484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.092 3.908 3 H 0.037 0.963 4 N -0.835 5.835 5 C 0.065 3.935 6 O -0.361 6.361 7 C 0.126 3.874 8 C -0.219 4.219 9 C -0.081 4.081 10 C -0.170 4.170 11 C 0.115 3.885 12 C -0.461 4.461 13 H 0.078 0.922 14 C 0.076 3.924 15 N -0.790 5.790 16 Si 0.907 3.093 17 H -0.260 1.260 18 H -0.272 1.272 19 H -0.275 1.275 20 C -0.230 4.230 21 C -0.068 4.068 22 H 0.054 0.946 23 H 0.046 0.954 24 H 0.080 0.920 25 H 0.337 0.663 26 H 0.338 0.662 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.280 0.720 34 H 0.092 0.908 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.248 10.207 -1.296 11.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.019 4.019 3 H 0.055 0.945 4 N -0.366 5.366 5 C -0.013 4.013 6 O -0.280 6.280 7 C 0.051 3.949 8 C -0.220 4.220 9 C -0.099 4.099 10 C -0.189 4.189 11 C 0.112 3.888 12 C -0.491 4.491 13 H 0.096 0.904 14 C -0.142 4.142 15 N -0.415 5.415 16 Si 0.732 3.268 17 H -0.184 1.184 18 H -0.197 1.197 19 H -0.200 1.200 20 C -0.249 4.249 21 C -0.086 4.086 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.099 0.901 25 H 0.149 0.851 26 H 0.150 0.850 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.104 0.896 32 H 0.136 0.864 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.444 9.580 -1.164 10.624 hybrid contribution 0.249 0.399 0.090 0.479 sum 4.693 9.979 -1.073 11.079 Atomic orbital electron populations 1.21712 0.93803 1.03981 1.00504 1.21362 0.96767 0.93471 0.90277 0.94487 1.58546 1.15721 1.58769 1.03546 1.22409 0.96292 0.86383 0.96252 1.88211 1.69454 1.24278 1.46050 1.21097 0.96191 0.90497 0.87134 1.18754 0.99058 0.92501 1.11715 1.20513 0.93904 0.96498 0.99022 1.21282 1.01201 0.92772 1.03666 1.17651 0.90540 0.93119 0.87474 1.19648 0.91745 0.93807 1.43886 0.90366 1.25929 0.97636 0.98287 0.92381 1.69852 1.06278 1.31076 1.34315 0.86283 0.79419 0.82249 0.78897 1.18380 1.19706 1.19990 1.20954 0.99760 0.96143 1.08051 1.20364 0.97628 0.93269 0.97374 0.92654 0.93461 0.90133 0.85058 0.84985 0.94446 0.93810 0.94755 0.94738 0.89588 0.86430 0.90911 0.88977 0.89515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.29 37.16 0.35 -1.56 16 2 C 0.09 1.16 3.77 -67.70 -0.26 0.91 16 3 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 4 N -0.84 -10.50 9.20 -4.66 -0.04 -10.55 16 5 C 0.06 0.92 5.71 37.16 0.21 1.13 16 6 O -0.36 -6.93 9.39 -35.23 -0.33 -7.26 16 7 C 0.13 2.43 6.05 36.00 0.22 2.65 16 8 C -0.22 -5.11 5.53 -104.33 -0.58 -5.68 16 9 C -0.08 -1.98 9.67 -39.66 -0.38 -2.37 16 10 C -0.17 -4.57 8.70 -38.87 -0.34 -4.91 16 11 C 0.11 3.16 5.58 -106.82 -0.60 2.57 16 12 C -0.46 -12.54 9.05 -37.74 -0.34 -12.88 16 13 H 0.08 2.04 7.91 -52.49 -0.42 1.62 16 14 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 15 N -0.79 -20.93 10.95 55.55 0.61 -20.32 16 16 Si 0.91 18.89 29.60 -169.99 -5.03 13.86 16 17 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 18 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 C -0.23 -5.89 9.80 -38.87 -0.38 -6.27 16 21 C -0.07 -1.62 9.67 -39.66 -0.38 -2.00 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.08 1.37 7.56 -51.92 -0.39 0.98 16 25 H 0.34 3.49 9.04 -39.29 -0.36 3.13 16 26 H 0.34 3.70 8.99 -39.29 -0.35 3.35 16 27 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.03 0.61 8.08 -51.93 -0.42 0.19 16 30 H 0.03 0.61 8.08 -51.93 -0.42 0.19 16 31 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 32 H 0.12 3.24 6.16 -52.48 -0.32 2.92 16 33 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 34 H 0.09 2.22 8.06 -52.49 -0.42 1.80 16 35 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 297.40 15.07 4.48 4.48 Total: -1.00 -29.60 297.40 -8.08 -37.68 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -5.19 Total: 8.68 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: -2.57 Total: -26.58 kcal Atomic # 7 Polarization: -31.43 SS G_CDS: 0.57 Total: -30.87 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.33 Total: -7.26 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.60 -8.08 -37.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710359568.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.875 kcal (2) G-P(sol) polarization free energy of solvation -29.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds