Wall clock time and date at job start Mon Mar 30 2020 03:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46804 * 2 1 4 4 N 1.46901 * 109.47400 * 239.99483 * 2 1 3 5 5 C 1.53009 * 109.46829 * 119.99317 * 2 1 3 6 6 O 1.42896 * 109.47021 * 55.00637 * 5 2 1 7 7 C 1.42903 * 113.99999 * 180.02562 * 6 5 2 8 8 C 1.50693 * 109.47162 * 179.97438 * 7 6 5 9 9 C 1.38632 * 119.75309 * 269.72566 * 8 7 6 10 10 C 1.37613 * 120.24892 * 179.72426 * 9 8 7 11 11 C 1.40721 * 119.74621 * 0.57027 * 10 9 8 12 12 C 1.41397 * 120.24351 * 179.68353 * 11 10 9 13 13 H 1.07998 * 119.99424 * 204.39910 * 12 11 10 14 14 C 1.39941 * 120.00312 * 24.40322 * 12 11 10 15 15 N 1.30825 * 120.00000 * 17.85552 * 14 12 11 16 16 Si 1.86805 * 120.00124 * 197.85800 * 14 12 11 17 17 H 1.48502 * 109.46876 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.46995 * 119.99622 * 16 14 12 19 19 H 1.48492 * 109.46850 * 239.99832 * 16 14 12 20 20 C 1.40711 * 119.51020 * 359.70374 * 11 10 9 21 21 C 1.37625 * 119.74582 * 0.02562 * 20 11 10 22 22 H 1.08995 * 109.47123 * 300.00236 * 1 2 3 23 23 H 1.08993 * 109.46730 * 60.01245 * 1 2 3 24 24 H 1.09008 * 109.46671 * 180.02562 * 1 2 3 25 25 H 1.00896 * 110.99571 * 60.00027 * 4 2 1 26 26 H 1.00899 * 110.99684 * 183.95749 * 4 2 1 27 27 H 1.09001 * 109.46792 * 175.00593 * 5 2 1 28 28 H 1.08995 * 109.47025 * 295.00262 * 5 2 1 29 29 H 1.09002 * 109.46561 * 299.99820 * 7 6 5 30 30 H 1.09000 * 109.46864 * 59.99357 * 7 6 5 31 31 H 1.08005 * 119.87202 * 359.97438 * 9 8 7 32 32 H 1.08006 * 120.12985 * 180.28082 * 10 9 8 33 33 H 0.96997 * 119.99997 * 180.02562 * 15 14 12 34 34 H 1.08000 * 120.12874 * 179.97438 * 20 11 10 35 35 H 1.08001 * 119.87611 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6926 -1.1994 5 6 2.0400 -0.7212 1.2494 6 8 1.4703 -2.0303 1.3096 7 6 1.8836 -2.7923 2.4457 8 6 1.2254 -4.1474 2.4080 9 6 -0.0020 -4.3334 3.0251 10 6 -0.6148 -5.5651 2.9921 11 6 0.0147 -6.6410 2.3391 12 6 -0.6024 -7.9127 2.3046 13 1 -0.0019 -8.8009 2.1752 14 6 -1.9913 -8.0203 2.4380 15 7 -2.7501 -6.9722 2.2455 16 14 -2.7618 -9.6607 2.8910 17 1 -1.6949 -10.6809 3.0523 18 1 -3.5104 -9.5207 4.1659 19 1 -3.6926 -10.0844 1.8144 20 6 1.2631 -6.4420 1.7211 21 6 1.8549 -5.2001 1.7618 22 1 -0.3633 0.5138 0.8899 23 1 -0.3632 0.5136 -0.8901 24 1 -0.3633 -1.0278 0.0005 25 1 1.6963 -0.2351 -2.0384 26 1 3.0263 -0.7627 -1.1907 27 1 3.1263 -0.7993 1.2058 28 1 1.7516 -0.1581 2.1370 29 1 2.9667 -2.9134 2.4273 30 1 1.5916 -2.2721 3.3579 31 1 -0.4808 -3.5075 3.5301 32 1 -1.5732 -5.7068 3.4696 33 1 -3.7128 -7.0467 2.3383 34 1 1.7554 -7.2608 1.2175 35 1 2.8133 -5.0451 1.2886 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710359568.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:40 Heat of formation + Delta-G solvation = -58.694584 kcal Electronic energy + Delta-G solvation = -16017.607407 eV Core-core repulsion = 13399.889829 eV Total energy + Delta-G solvation = -2617.717578 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.76444 -38.74541 -36.33848 -35.43688 -32.32485 -31.16908 -30.09778 -28.66582 -27.10110 -25.14740 -22.89327 -21.81466 -21.33914 -19.23367 -17.63077 -17.25910 -17.00295 -16.60986 -16.08263 -15.65392 -15.60577 -15.15448 -14.63500 -14.25949 -13.84651 -13.67276 -13.42717 -12.97897 -12.84261 -12.72477 -12.66981 -12.48979 -12.33998 -11.97160 -11.64949 -11.41546 -11.26563 -11.02275 -10.35606 -9.48510 -9.37464 -9.25219 -8.64611 -6.35485 0.89444 1.14879 1.38357 1.48772 1.54653 2.21188 2.62335 3.16100 3.65054 3.79238 4.02427 4.12409 4.30454 4.32326 4.45633 4.53832 4.62390 4.64785 4.67617 4.80346 4.97675 5.00920 5.04135 5.15769 5.36646 5.45704 5.46303 5.70311 5.94595 6.09485 6.23441 6.30916 6.37509 6.58231 6.69199 6.69300 6.92908 7.02788 8.32855 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.040042 B = 0.005014 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.098872 B = 5583.400641 C = 5814.640484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.093 3.907 3 H 0.071 0.929 4 N -0.855 5.855 5 C 0.056 3.944 6 O -0.390 6.390 7 C 0.131 3.869 8 C -0.216 4.216 9 C -0.088 4.088 10 C -0.194 4.194 11 C 0.082 3.918 12 C -0.500 4.500 13 H 0.077 0.923 14 C 0.034 3.966 15 N -0.826 5.826 16 Si 0.986 3.014 17 H -0.257 1.257 18 H -0.262 1.262 19 H -0.265 1.265 20 C -0.247 4.247 21 C -0.073 4.073 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.037 0.963 25 H 0.348 0.652 26 H 0.346 0.654 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.289 0.711 34 H 0.098 0.902 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.034 11.377 -1.288 12.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.018 4.018 3 H 0.089 0.911 4 N -0.389 5.389 5 C -0.021 4.021 6 O -0.310 6.310 7 C 0.055 3.945 8 C -0.217 4.217 9 C -0.106 4.106 10 C -0.214 4.214 11 C 0.080 3.920 12 C -0.529 4.529 13 H 0.095 0.905 14 C -0.181 4.181 15 N -0.451 5.451 16 Si 0.806 3.194 17 H -0.180 1.180 18 H -0.187 1.187 19 H -0.190 1.190 20 C -0.266 4.266 21 C -0.091 4.091 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.056 0.944 25 H 0.162 0.838 26 H 0.160 0.840 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.250 10.776 -1.167 12.043 hybrid contribution 0.087 0.206 0.037 0.227 sum 5.336 10.982 -1.130 12.262 Atomic orbital electron populations 1.21684 0.94833 1.01472 1.01854 1.21410 0.95916 0.94883 0.89612 0.91121 1.58520 1.16579 1.59565 1.04195 1.22732 0.97202 0.84325 0.97848 1.88145 1.70444 1.26609 1.45770 1.21002 0.96802 0.88550 0.88112 1.19262 0.98219 0.94763 1.09469 1.20783 0.94586 0.96131 0.99109 1.21271 1.01210 0.93990 1.04885 1.18016 0.91724 0.93827 0.88482 1.19904 0.93027 0.93795 1.46188 0.90497 1.26830 0.97497 1.02357 0.91414 1.69904 1.06994 1.33410 1.34833 0.85116 0.78374 0.77023 0.78909 1.18029 1.18700 1.18991 1.21181 0.99644 0.97429 1.08389 1.20703 0.98639 0.92639 0.97095 0.91697 0.91856 0.94403 0.83843 0.84025 0.92814 0.92200 0.92710 0.93050 0.87763 0.88022 0.90065 0.88348 0.86778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.29 71.98 0.67 -2.86 16 2 C 0.09 2.07 3.77 44.92 0.17 2.24 16 3 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 4 N -0.86 -19.62 9.20 -168.66 -1.55 -21.17 16 5 C 0.06 1.43 5.71 71.99 0.41 1.84 16 6 O -0.39 -14.17 9.39 -148.98 -1.40 -15.57 16 7 C 0.13 4.71 6.05 71.23 0.43 5.14 16 8 C -0.22 -9.86 5.53 -19.68 -0.11 -9.97 16 9 C -0.09 -4.33 9.67 22.22 0.21 -4.12 16 10 C -0.19 -10.81 8.70 22.73 0.20 -10.61 16 11 C 0.08 4.67 5.58 -21.29 -0.12 4.55 16 12 C -0.50 -28.11 9.05 23.46 0.21 -27.90 16 13 H 0.08 4.16 7.91 -2.91 -0.02 4.13 16 14 C 0.03 1.77 5.14 85.26 0.44 2.20 16 15 N -0.83 -44.96 10.95 21.83 0.24 -44.72 16 16 Si 0.99 39.16 29.60 68.60 2.03 41.19 16 17 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 18 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 19 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 20 C -0.25 -12.91 9.80 22.73 0.22 -12.69 16 21 C -0.07 -3.41 9.67 22.22 0.21 -3.20 16 22 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.04 1.27 7.56 -2.38 -0.02 1.25 16 25 H 0.35 6.47 9.04 -89.70 -0.81 5.66 16 26 H 0.35 6.74 8.99 -89.69 -0.81 5.93 16 27 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 30 H 0.05 1.67 8.08 -2.39 -0.02 1.65 16 31 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 32 H 0.10 5.87 6.16 -2.91 -0.02 5.85 16 33 H 0.29 14.09 8.30 -92.71 -0.77 13.32 16 34 H 0.10 4.84 8.06 -2.91 -0.02 4.82 16 35 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -65.26 297.40 1.74 -63.52 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: -0.53 Total: 32.13 kcal Atomic # 6 Polarization: -58.33 SS G_CDS: 2.95 Total: -55.38 kcal Atomic # 7 Polarization: -64.58 SS G_CDS: -1.31 Total: -65.89 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -1.40 Total: -15.57 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -65.26 1.74 -63.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710359568.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.821 kcal (2) G-P(sol) polarization free energy of solvation -65.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds