Wall clock time and date at job start Mon Mar 30 2020 03:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38600 * 120.07669 * 2 1 4 4 C 1.38881 * 117.96929 * 179.75407 * 3 2 1 5 5 C 1.50703 * 121.01604 * 180.26416 * 4 3 2 6 6 N 1.46900 * 109.47188 * 260.25997 * 5 4 3 7 7 C 1.46908 * 110.99560 * 66.05181 * 6 5 4 8 8 C 1.46900 * 110.99793 * 189.99874 * 6 5 4 9 9 C 1.50706 * 109.47137 * 170.00458 * 8 6 5 10 10 H 1.07998 * 119.99397 * 0.02562 * 9 8 6 11 11 C 1.37872 * 120.00182 * 179.97438 * 9 8 6 12 12 N 1.31516 * 119.99922 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99955 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46874 * 90.00441 * 13 11 9 15 15 H 1.48498 * 109.47038 * 210.00223 * 13 11 9 16 16 H 1.48503 * 109.47108 * 330.00673 * 13 11 9 17 17 C 1.38605 * 117.96740 * 0.52411 * 4 3 2 18 18 C 1.50706 * 120.07743 * 179.74368 * 17 4 3 19 19 N 1.31932 * 119.84809 * 359.46263 * 17 4 3 20 20 N 1.28345 * 122.17996 * 0.28141 * 19 17 4 21 21 H 1.08999 * 109.47098 * 269.97466 * 1 2 3 22 22 H 1.09000 * 109.47021 * 29.98240 * 1 2 3 23 23 H 1.08997 * 109.47015 * 149.97697 * 1 2 3 24 24 H 1.07999 * 121.01766 * 0.04145 * 3 2 1 25 25 H 1.08998 * 109.46947 * 20.26806 * 5 4 3 26 26 H 1.09006 * 109.46907 * 140.26830 * 5 4 3 27 27 H 1.09003 * 109.46751 * 59.99765 * 7 6 5 28 28 H 1.09001 * 109.46693 * 179.97438 * 7 6 5 29 29 H 1.08995 * 109.46592 * 299.99526 * 7 6 5 30 30 H 1.09004 * 109.47529 * 290.00117 * 8 6 5 31 31 H 1.09004 * 109.47260 * 50.00676 * 8 6 5 32 32 H 0.97001 * 119.99780 * 180.02562 * 12 11 9 33 33 H 1.09001 * 109.46953 * 269.72107 * 18 17 4 34 34 H 1.09000 * 109.47318 * 29.71705 * 18 17 4 35 35 H 1.09000 * 109.47161 * 149.72335 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2017 1.1994 0.0000 4 6 3.5895 1.1483 0.0053 5 6 4.4130 2.4104 0.0116 6 7 4.8821 2.6959 -1.3509 7 6 3.7566 3.0174 -2.2386 8 6 5.8769 3.7768 -1.3495 9 6 6.5123 3.8764 -2.7124 10 1 6.2073 3.2043 -3.5008 11 6 7.4823 4.8263 -2.9531 12 7 7.8533 5.6451 -1.9931 13 14 8.2704 4.9493 -4.6423 14 1 7.4907 5.8914 -5.4848 15 1 9.6631 5.4457 -4.5037 16 1 8.2838 3.6088 -5.2811 17 6 4.1941 -0.0989 -0.0010 18 6 5.6971 -0.2097 -0.0015 19 7 3.4508 -1.1889 -0.0009 20 7 2.1683 -1.1417 -0.0005 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3633 0.8901 -0.5136 23 1 -0.3633 -0.8898 -0.5142 24 1 1.6796 2.1448 0.0007 25 1 3.8028 3.2406 0.3672 26 1 5.2709 2.2812 0.6715 27 1 3.2330 3.8946 -1.8582 28 1 4.1320 3.2250 -3.2407 29 1 3.0699 2.1718 -2.2754 30 1 5.3880 4.7203 -1.1068 31 1 6.6444 3.5633 -0.6056 32 1 8.5354 6.3136 -2.1625 33 1 6.0591 -0.2362 -1.0293 34 1 6.1251 0.6511 0.5123 35 1 5.9942 -1.1241 0.5120 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720591771.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:14 Heat of formation + Delta-G solvation = 49.551636 kcal Electronic energy + Delta-G solvation = -16428.477061 eV Core-core repulsion = 13847.746142 eV Total energy + Delta-G solvation = -2580.730919 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.99781 -37.04229 -34.37100 -33.58341 -32.30410 -29.83669 -27.64774 -27.12685 -26.45119 -24.28762 -22.98442 -21.51332 -20.21145 -17.49842 -16.48931 -15.68234 -15.42877 -14.93257 -14.64888 -14.33498 -14.02670 -13.44322 -13.32552 -12.98356 -12.64542 -12.29874 -12.24161 -12.03829 -12.01532 -11.57992 -11.24188 -10.97482 -10.82916 -10.59301 -10.54342 -10.00937 -9.73715 -9.49092 -9.28693 -9.15614 -8.51666 -7.44387 -6.10693 -4.12436 0.97124 1.09204 3.27302 3.34143 3.38408 3.66570 4.13599 4.35916 4.51047 4.66951 4.76686 4.96849 5.04135 5.19472 5.25786 5.39483 5.42293 5.64260 5.76508 5.81752 5.82767 5.96152 6.02721 6.07314 6.17425 6.25143 6.39906 6.57196 6.62083 7.11976 7.19459 7.68023 7.92360 8.04318 8.40015 8.93048 8.94755 9.52368 11.00098 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.039596 B = 0.005575 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.979724 B = 5021.493334 C = 5227.454680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.055 3.945 3 C -0.119 4.119 4 C -0.057 4.057 5 C 0.088 3.912 6 N -0.531 5.531 7 C 0.035 3.965 8 C 0.193 3.807 9 C -0.509 4.509 10 H 0.064 0.936 11 C 0.057 3.943 12 N -0.898 5.898 13 Si 0.898 3.102 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.272 1.272 17 C 0.088 3.912 18 C -0.096 4.096 19 N -0.249 5.249 20 N -0.253 5.253 21 H 0.078 0.922 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.143 0.857 25 H 0.039 0.961 26 H 0.089 0.911 27 H 0.014 0.986 28 H 0.078 0.922 29 H 0.041 0.959 30 H -0.007 1.007 31 H 0.033 0.967 32 H 0.262 0.738 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.601 -6.812 4.905 13.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.090 4.090 3 C -0.149 4.149 4 C -0.069 4.069 5 C -0.040 4.040 6 N -0.255 5.255 7 C -0.113 4.113 8 C 0.069 3.931 9 C -0.547 4.547 10 H 0.082 0.918 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.726 3.274 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.197 1.197 17 C -0.057 4.057 18 C -0.154 4.154 19 N -0.091 5.091 20 N -0.096 5.096 21 H 0.097 0.903 22 H 0.095 0.905 23 H 0.098 0.902 24 H 0.161 0.839 25 H 0.057 0.943 26 H 0.108 0.892 27 H 0.032 0.968 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.011 0.989 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.290 -8.745 4.760 14.318 hybrid contribution 0.087 2.616 -0.596 2.684 sum -10.203 -6.129 4.164 12.610 Atomic orbital electron populations 1.20610 0.87938 1.03710 1.03166 1.22746 0.98714 0.90542 0.96989 1.22179 0.94178 0.99590 0.98917 1.21131 0.94075 0.97129 0.94581 1.21068 0.97491 0.91316 0.94145 1.62181 1.12780 1.45872 1.04700 1.22260 0.92672 0.97185 0.99198 1.19780 0.88979 0.85973 0.98390 1.21115 1.20617 1.16483 0.96530 0.91823 1.24971 0.96709 0.95557 0.97219 1.69950 1.31330 1.20175 1.32283 0.86497 0.78538 0.78384 0.84018 1.20742 1.21185 1.19720 1.22779 0.99242 0.89511 0.94172 1.20669 0.87149 1.03073 1.04486 1.72887 0.99216 1.26980 1.10017 1.72834 1.01767 1.24830 1.10124 0.90293 0.90547 0.90243 0.83926 0.94274 0.89245 0.96790 0.90340 0.94023 0.98919 0.94938 0.92836 0.88955 0.89922 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 10.20 36.01 0.37 -0.53 16 2 C 0.05 0.75 6.86 -82.41 -0.57 0.18 16 3 C -0.12 -1.63 8.66 -39.21 -0.34 -1.97 16 4 C -0.06 -0.89 4.60 -104.25 -0.48 -1.37 16 5 C 0.09 1.47 4.56 -4.97 -0.02 1.44 16 6 N -0.53 -10.69 4.74 -245.81 -1.17 -11.86 16 7 C 0.04 0.66 9.11 60.07 0.55 1.21 16 8 C 0.19 4.74 4.72 -4.97 -0.02 4.71 16 9 C -0.51 -13.71 8.46 -34.44 -0.29 -14.00 16 10 H 0.06 1.71 7.12 -52.49 -0.37 1.34 16 11 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 12 N -0.90 -25.81 13.29 55.43 0.74 -25.08 16 13 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 17 C 0.09 1.43 6.86 -82.41 -0.57 0.86 16 18 C -0.10 -1.39 9.83 36.01 0.35 -1.03 16 19 N -0.25 -4.33 11.43 33.60 0.38 -3.95 16 20 N -0.25 -4.17 11.43 33.59 0.38 -3.79 16 21 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 23 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 25 H 0.04 0.62 8.03 -51.93 -0.42 0.20 16 26 H 0.09 1.44 6.31 -51.93 -0.33 1.11 16 27 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.08 1.59 6.76 -51.93 -0.35 1.24 16 29 H 0.04 0.70 6.66 -51.93 -0.35 0.36 16 30 H -0.01 -0.18 8.12 -51.93 -0.42 -0.61 16 31 H 0.03 0.84 7.93 -51.93 -0.41 0.43 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.08 1.16 6.23 -51.93 -0.32 0.84 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 293.41 15.07 4.42 4.42 Total: -1.00 -30.22 293.41 -6.44 -36.67 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -5.06 Total: -3.47 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -1.12 Total: -9.03 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.34 Total: -44.67 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.22 -6.44 -36.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720591771.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.218 kcal (2) G-P(sol) polarization free energy of solvation -30.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds