Wall clock time and date at job start Mon Mar 30 2020 03:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34546 * 125.69418 * 2 1 4 4 C 1.42044 * 107.33577 * 180.02562 * 3 2 1 5 5 C 1.47590 * 126.49766 * 180.02562 * 4 3 2 6 6 N 1.29694 * 119.99970 * 180.02562 * 5 4 3 7 7 N 1.40101 * 120.00194 * 180.02562 * 6 5 4 8 8 C 1.46506 * 120.00104 * 180.02562 * 7 6 5 9 9 H 1.08998 * 109.46566 * 329.99513 * 8 7 6 10 10 C 1.52997 * 109.47289 * 89.99778 * 8 7 6 11 11 C 1.50697 * 109.47015 * 210.00236 * 8 7 6 12 12 H 1.07998 * 120.00039 * 359.97438 * 11 8 7 13 13 C 1.37880 * 119.99815 * 179.97438 * 11 8 7 14 14 N 1.31508 * 119.99915 * 359.97438 * 13 11 8 15 15 Si 1.86805 * 119.99777 * 179.97438 * 13 11 8 16 16 H 1.48497 * 109.47155 * 89.99872 * 15 13 11 17 17 H 1.48499 * 109.47102 * 210.00327 * 15 13 11 18 18 H 1.48499 * 109.46909 * 330.00049 * 15 13 11 19 19 C 1.36359 * 107.00117 * 0.26029 * 4 3 2 20 20 C 1.50700 * 125.99753 * 179.71841 * 19 4 3 21 21 N 1.36184 * 108.00790 * 359.57992 * 19 4 3 22 22 H 0.96997 * 125.47759 * 180.16586 * 21 19 4 23 23 H 1.09000 * 109.47229 * 90.02551 * 1 2 3 24 24 H 1.09006 * 109.46949 * 210.02302 * 1 2 3 25 25 H 1.09002 * 109.47172 * 330.01623 * 1 2 3 26 26 H 1.08003 * 126.33117 * 359.97438 * 3 2 1 27 27 H 1.07994 * 120.00308 * 0.02562 * 5 4 3 28 28 H 0.96995 * 119.99712 * 359.97438 * 7 6 5 29 29 H 1.09002 * 109.47153 * 179.97438 * 10 8 7 30 30 H 1.09001 * 109.46832 * 60.00146 * 10 8 7 31 31 H 1.09004 * 109.47261 * 300.00128 * 10 8 7 32 32 H 0.97001 * 119.99839 * 180.02562 * 14 13 11 33 33 H 1.09008 * 109.47137 * 90.00214 * 20 19 4 34 34 H 1.09000 * 109.47574 * 209.99821 * 20 19 4 35 35 H 1.09003 * 109.47340 * 330.00466 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2920 1.0927 0.0000 4 6 3.6402 0.6453 -0.0006 5 6 4.8470 1.4949 -0.0003 6 7 6.0238 0.9497 -0.0014 7 7 7.1695 1.7562 -0.0006 8 6 8.4988 1.1403 -0.0024 9 1 8.4546 0.1792 0.5097 10 6 8.9608 0.9285 -1.4455 11 6 9.4722 2.0443 0.7091 12 1 9.1345 2.9838 1.1211 13 6 10.7939 1.6719 0.8341 14 7 11.2049 0.5277 0.3329 15 14 12.0006 2.7929 1.7156 16 1 12.0264 2.4534 3.1610 17 1 13.3572 2.6101 1.1398 18 1 11.5774 4.2062 1.5465 19 6 3.6079 -0.7179 -0.0069 20 6 4.8058 -1.6322 -0.0158 21 7 2.3032 -1.1081 -0.0006 22 1 1.9902 -2.0262 -0.0007 23 1 -0.3634 -0.0005 -1.0277 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3633 0.8901 0.5136 26 1 1.9588 2.1200 -0.0004 27 1 4.7503 2.5705 0.0009 28 1 7.0825 2.7222 0.0005 29 1 9.9500 0.4707 -1.4469 30 1 9.0050 1.8897 -1.9576 31 1 8.2567 0.2746 -1.9602 32 1 12.1346 0.2656 0.4212 33 1 5.0986 -1.8575 1.0098 34 1 4.5527 -2.5577 -0.5329 35 1 5.6327 -1.1428 -0.5304 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771886982.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:03 Heat of formation + Delta-G solvation = 72.166799 kcal Electronic energy + Delta-G solvation = -15843.888444 eV Core-core repulsion = 13264.138192 eV Total energy + Delta-G solvation = -2579.750252 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.90852 -36.22611 -34.04471 -32.34847 -31.59357 -30.21552 -28.95700 -27.09710 -25.17813 -24.00454 -21.98952 -20.34241 -19.87782 -18.48122 -16.66279 -16.41868 -15.32540 -14.89518 -14.70764 -13.81191 -13.49916 -13.11853 -12.97897 -12.81101 -12.44978 -12.29576 -12.04439 -11.87997 -11.82775 -11.36068 -11.30464 -10.97461 -10.81278 -10.49915 -10.17496 -10.13802 -9.20781 -8.94048 -8.65402 -8.42452 -7.71560 -6.46867 -6.07736 -4.15435 2.26781 2.65568 3.27854 3.34014 3.36804 3.42933 4.00418 4.05190 4.43750 5.01602 5.15754 5.24277 5.38458 5.46472 5.48622 5.64358 5.77800 5.97780 6.07567 6.18115 6.30182 6.53593 6.73735 6.85871 7.07726 7.12209 7.24231 7.31094 7.40213 7.65718 7.80035 7.89270 7.96143 8.26683 8.44515 8.94868 9.50996 9.57859 10.97819 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.053588 B = 0.004422 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.384167 B = 6330.651377 C = 6558.232917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.001 4.001 3 C -0.179 4.179 4 C -0.099 4.099 5 C 0.036 3.964 6 N -0.214 5.214 7 N -0.637 5.637 8 C 0.300 3.700 9 H 0.039 0.961 10 C -0.150 4.150 11 C -0.527 4.527 12 H 0.059 0.941 13 C 0.066 3.934 14 N -0.887 5.887 15 Si 0.901 3.099 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.043 3.957 20 C -0.085 4.085 21 N -0.558 5.558 22 H 0.408 0.592 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.077 0.923 26 H 0.134 0.866 27 H 0.096 0.904 28 H 0.365 0.635 29 H 0.088 0.912 30 H 0.024 0.976 31 H 0.011 0.989 32 H 0.263 0.737 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.121 -2.672 -1.235 17.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.107 4.107 5 C -0.174 4.174 6 N -0.025 5.025 7 N -0.373 5.373 8 C 0.197 3.803 9 H 0.057 0.943 10 C -0.209 4.209 11 C -0.567 4.567 12 H 0.077 0.923 13 C -0.137 4.137 14 N -0.525 5.525 15 Si 0.729 3.271 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.072 4.072 20 C -0.143 4.143 21 N -0.155 5.155 22 H 0.244 0.756 23 H 0.085 0.915 24 H 0.077 0.923 25 H 0.095 0.905 26 H 0.152 0.848 27 H 0.113 0.887 28 H 0.201 0.799 29 H 0.106 0.894 30 H 0.043 0.957 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.270 -3.851 -1.253 16.767 hybrid contribution 0.222 1.463 0.453 1.547 sum -16.048 -2.388 -0.800 16.245 Atomic orbital electron populations 1.20241 0.88560 1.02743 1.02124 1.20067 0.92980 0.86302 1.11856 1.20604 0.91597 0.97441 1.10920 1.17634 0.91451 0.90754 1.10869 1.22835 0.89438 0.95753 1.09376 1.73863 0.95024 1.27077 1.06565 1.48908 1.01452 1.04609 1.82348 1.18423 0.74903 0.94296 0.92630 0.94284 1.22205 1.02196 0.98507 0.98008 1.21277 0.93481 1.05552 1.36361 0.92291 1.24855 0.97999 0.95357 0.95480 1.69893 1.16677 1.21080 1.44893 0.86451 0.80157 0.80813 0.79699 1.20591 1.21094 1.19907 1.20602 0.84245 0.94497 1.07889 1.20464 0.94535 0.96446 1.02814 1.41784 1.05713 1.07884 1.60154 0.75625 0.91542 0.92284 0.90456 0.84849 0.88707 0.79938 0.89363 0.95668 0.96963 0.92681 0.91311 0.93102 0.87733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.41 36.01 0.37 -0.26 16 2 C 0.00 -0.01 7.14 -81.84 -0.58 -0.60 16 3 C -0.18 -2.54 10.74 -39.43 -0.42 -2.96 16 4 C -0.10 -1.66 6.11 -105.30 -0.64 -2.31 16 5 C 0.04 0.67 11.02 -14.64 -0.16 0.51 16 6 N -0.21 -4.56 8.89 32.18 0.29 -4.27 16 7 N -0.64 -14.69 6.10 -5.88 -0.04 -14.73 16 8 C 0.30 7.83 3.23 -69.08 -0.22 7.61 16 9 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 10 C -0.15 -3.77 9.29 37.16 0.35 -3.43 16 11 C -0.53 -14.49 8.74 -34.44 -0.30 -14.80 16 12 H 0.06 1.59 7.79 -52.49 -0.41 1.19 16 13 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 14 N -0.89 -25.05 11.32 55.43 0.63 -24.42 16 15 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 C 0.04 0.67 7.22 -81.34 -0.59 0.08 16 20 C -0.09 -1.28 9.81 36.01 0.35 -0.92 16 21 N -0.56 -6.78 6.05 -5.19 -0.03 -6.81 16 22 H 0.41 3.61 8.96 -40.82 -0.37 3.24 16 23 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 27 H 0.10 1.63 8.02 -52.49 -0.42 1.21 16 28 H 0.37 7.93 8.58 -182.60 -1.57 6.36 16 29 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 30 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.10 1.87 6.24 -51.93 -0.32 1.55 16 LS Contribution 299.41 15.07 4.51 4.51 Total: -1.00 -30.11 299.41 -7.95 -38.06 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -6.34 Total: 6.94 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -1.94 Total: -15.37 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.85 Total: -50.23 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.11 -7.95 -38.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771886982.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.224 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds