Wall clock time and date at job start Mon Mar 30 2020 03:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34546 * 125.69418 * 2 1 4 4 C 1.42044 * 107.33577 * 180.02562 * 3 2 1 5 5 C 1.47590 * 126.49766 * 180.02562 * 4 3 2 6 6 N 1.29694 * 119.99970 * 180.02562 * 5 4 3 7 7 N 1.40101 * 120.00194 * 180.02562 * 6 5 4 8 8 C 1.46506 * 120.00104 * 180.02562 * 7 6 5 9 9 H 1.08998 * 109.46566 * 329.99513 * 8 7 6 10 10 C 1.52997 * 109.47289 * 89.99778 * 8 7 6 11 11 C 1.50697 * 109.47015 * 210.00236 * 8 7 6 12 12 H 1.07998 * 120.00039 * 359.97438 * 11 8 7 13 13 C 1.37880 * 119.99815 * 179.97438 * 11 8 7 14 14 N 1.31508 * 119.99915 * 359.97438 * 13 11 8 15 15 Si 1.86805 * 119.99777 * 179.97438 * 13 11 8 16 16 H 1.48497 * 109.47155 * 89.99872 * 15 13 11 17 17 H 1.48499 * 109.47102 * 210.00327 * 15 13 11 18 18 H 1.48499 * 109.46909 * 330.00049 * 15 13 11 19 19 C 1.36359 * 107.00117 * 0.26029 * 4 3 2 20 20 C 1.50700 * 125.99753 * 179.71841 * 19 4 3 21 21 N 1.36184 * 108.00790 * 359.57992 * 19 4 3 22 22 H 0.96997 * 125.47759 * 180.16586 * 21 19 4 23 23 H 1.09000 * 109.47229 * 90.02551 * 1 2 3 24 24 H 1.09006 * 109.46949 * 210.02302 * 1 2 3 25 25 H 1.09002 * 109.47172 * 330.01623 * 1 2 3 26 26 H 1.08003 * 126.33117 * 359.97438 * 3 2 1 27 27 H 1.07994 * 120.00308 * 0.02562 * 5 4 3 28 28 H 0.96995 * 119.99712 * 359.97438 * 7 6 5 29 29 H 1.09002 * 109.47153 * 179.97438 * 10 8 7 30 30 H 1.09001 * 109.46832 * 60.00146 * 10 8 7 31 31 H 1.09004 * 109.47261 * 300.00128 * 10 8 7 32 32 H 0.97001 * 119.99839 * 180.02562 * 14 13 11 33 33 H 1.09008 * 109.47137 * 90.00214 * 20 19 4 34 34 H 1.09000 * 109.47574 * 209.99821 * 20 19 4 35 35 H 1.09003 * 109.47340 * 330.00466 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2920 1.0927 0.0000 4 6 3.6402 0.6453 -0.0006 5 6 4.8470 1.4949 -0.0003 6 7 6.0238 0.9497 -0.0014 7 7 7.1695 1.7562 -0.0006 8 6 8.4988 1.1403 -0.0024 9 1 8.4546 0.1792 0.5097 10 6 8.9608 0.9285 -1.4455 11 6 9.4722 2.0443 0.7091 12 1 9.1345 2.9838 1.1211 13 6 10.7939 1.6719 0.8341 14 7 11.2049 0.5277 0.3329 15 14 12.0006 2.7929 1.7156 16 1 12.0264 2.4534 3.1610 17 1 13.3572 2.6101 1.1398 18 1 11.5774 4.2062 1.5465 19 6 3.6079 -0.7179 -0.0069 20 6 4.8058 -1.6322 -0.0158 21 7 2.3032 -1.1081 -0.0006 22 1 1.9902 -2.0262 -0.0007 23 1 -0.3634 -0.0005 -1.0277 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3633 0.8901 0.5136 26 1 1.9588 2.1200 -0.0004 27 1 4.7503 2.5705 0.0009 28 1 7.0825 2.7222 0.0005 29 1 9.9500 0.4707 -1.4469 30 1 9.0050 1.8897 -1.9576 31 1 8.2567 0.2746 -1.9602 32 1 12.1346 0.2656 0.4212 33 1 5.0986 -1.8575 1.0098 34 1 4.5527 -2.5577 -0.5329 35 1 5.6327 -1.1428 -0.5304 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771886982.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:03 Heat of formation + Delta-G solvation = 53.427107 kcal Electronic energy + Delta-G solvation = -15844.701058 eV Core-core repulsion = 13264.138192 eV Total energy + Delta-G solvation = -2580.562866 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.99633 -37.94145 -35.87990 -33.71807 -32.98020 -31.72804 -29.90924 -28.79971 -27.27513 -25.19350 -23.40126 -22.14225 -21.06659 -19.90408 -18.42543 -17.74741 -16.88129 -16.82120 -15.74589 -15.54352 -14.49434 -14.46585 -14.40090 -14.07109 -13.91454 -13.81530 -13.31767 -13.19297 -12.91947 -12.84541 -12.80141 -12.71557 -12.41990 -12.32101 -12.17908 -12.03851 -11.09271 -10.64997 -10.55776 -9.91928 -8.87933 -8.19739 -8.02695 -6.32071 0.94901 1.43371 1.43858 1.54595 1.56689 2.26514 2.44099 2.59414 2.64835 3.13011 4.10620 4.17887 4.28843 4.43954 4.61160 4.70907 4.79751 4.84286 4.88509 4.91314 5.03010 5.14286 5.17499 5.21756 5.28352 5.47268 5.59276 5.63418 5.85926 5.92254 6.11440 6.21252 6.32122 6.49873 6.86869 6.91393 7.39801 7.94574 8.89476 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.053588 B = 0.004422 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.384167 B = 6330.651377 C = 6558.232917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.017 3.983 3 C -0.200 4.200 4 C -0.140 4.140 5 C 0.064 3.936 6 N -0.251 5.251 7 N -0.653 5.653 8 C 0.310 3.690 9 H 0.001 0.999 10 C -0.135 4.135 11 C -0.548 4.548 12 H 0.058 0.942 13 C 0.019 3.981 14 N -0.914 5.914 15 Si 0.969 3.031 16 H -0.276 1.276 17 H -0.279 1.279 18 H -0.267 1.267 19 C 0.037 3.963 20 C -0.081 4.081 21 N -0.545 5.545 22 H 0.426 0.574 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.148 0.852 27 H 0.108 0.892 28 H 0.368 0.632 29 H 0.068 0.932 30 H 0.027 0.973 31 H 0.017 0.983 32 H 0.266 0.734 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.331 -2.487 -0.986 19.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.095 4.095 3 C -0.225 4.225 4 C -0.148 4.148 5 C -0.146 4.146 6 N -0.060 5.060 7 N -0.389 5.389 8 C 0.206 3.794 9 H 0.018 0.982 10 C -0.194 4.194 11 C -0.587 4.587 12 H 0.076 0.924 13 C -0.181 4.181 14 N -0.553 5.553 15 Si 0.794 3.206 16 H -0.202 1.202 17 H -0.204 1.204 18 H -0.192 1.192 19 C -0.080 4.080 20 C -0.139 4.139 21 N -0.143 5.143 22 H 0.265 0.735 23 H 0.100 0.900 24 H 0.097 0.903 25 H 0.108 0.892 26 H 0.166 0.834 27 H 0.125 0.875 28 H 0.204 0.796 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.516 -3.681 -1.008 18.905 hybrid contribution 0.639 1.335 0.365 1.524 sum -17.877 -2.346 -0.643 18.041 Atomic orbital electron populations 1.20391 0.85150 1.04366 1.03576 1.20712 0.94867 0.85353 1.08566 1.20865 0.90570 0.99082 1.12031 1.17867 0.91799 0.91581 1.13597 1.23381 0.89480 0.96959 1.04800 1.73975 0.95153 1.26882 1.09998 1.48490 1.01250 1.04574 1.84636 1.18031 0.76539 0.92514 0.92277 0.98151 1.22015 1.01085 0.98417 0.97897 1.21553 0.94328 1.05801 1.36999 0.92361 1.25700 0.99646 0.96752 0.96043 1.70015 1.17182 1.22482 1.45585 0.85390 0.77794 0.79010 0.78394 1.20204 1.20396 1.19189 1.20606 0.85565 0.94208 1.07644 1.20349 0.93688 0.97421 1.02433 1.41797 1.04541 1.09156 1.58813 0.73511 0.90043 0.90345 0.89220 0.83380 0.87518 0.79575 0.91317 0.95408 0.96395 0.92435 0.91819 0.90217 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.41 71.24 0.74 -0.16 16 2 C 0.02 0.35 7.14 41.00 0.29 0.65 16 3 C -0.20 -5.24 10.74 22.37 0.24 -5.00 16 4 C -0.14 -4.59 6.11 -20.30 -0.12 -4.71 16 5 C 0.06 2.42 11.02 87.48 0.96 3.39 16 6 N -0.25 -11.04 8.89 -52.12 -0.46 -11.50 16 7 N -0.65 -31.21 6.10 -172.52 -1.05 -32.26 16 8 C 0.31 16.88 3.23 44.24 0.14 17.03 16 9 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 10 C -0.13 -7.02 9.29 71.98 0.67 -6.35 16 11 C -0.55 -30.84 8.74 25.60 0.22 -30.61 16 12 H 0.06 3.20 7.79 -2.91 -0.02 3.18 16 13 C 0.02 1.04 5.30 84.66 0.45 1.49 16 14 N -0.91 -52.70 11.32 21.45 0.24 -52.46 16 15 Si 0.97 43.50 29.54 68.60 2.03 45.53 16 16 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 17 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 19 C 0.04 1.10 7.22 41.44 0.30 1.40 16 20 C -0.08 -2.44 9.81 71.24 0.70 -1.74 16 21 N -0.54 -11.73 6.05 -170.32 -1.03 -12.76 16 22 H 0.43 6.10 8.96 -92.71 -0.83 5.27 16 23 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 25 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.15 3.31 8.06 -2.91 -0.02 3.28 16 27 H 0.11 3.66 8.02 -2.91 -0.02 3.63 16 28 H 0.37 16.48 8.58 -213.33 -1.83 14.65 16 29 H 0.07 3.83 6.07 -2.39 -0.01 3.81 16 30 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 33 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.07 2.71 6.24 -2.39 -0.01 2.69 16 Total: -1.00 -66.24 299.41 2.75 -63.48 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: -1.56 Total: 24.61 kcal Atomic # 6 Polarization: -29.23 SS G_CDS: 4.60 Total: -24.63 kcal Atomic # 7 Polarization: -106.68 SS G_CDS: -2.30 Total: -108.98 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -66.24 2.75 -63.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771886982.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.912 kcal (2) G-P(sol) polarization free energy of solvation -66.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds