Wall clock time and date at job start Mon Mar 30 2020 03:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38618 * 120.07667 * 2 1 4 4 C 1.38872 * 117.96711 * 180.28366 * 3 2 1 5 5 C 1.50694 * 121.01420 * 179.74257 * 4 3 2 6 6 N 1.46902 * 109.46935 * 259.71731 * 5 4 3 7 7 C 1.46906 * 111.00004 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.46990 * 325.00366 * 7 6 5 9 9 C 1.53000 * 109.46852 * 85.00289 * 7 6 5 10 10 C 1.50693 * 109.47329 * 205.00433 * 7 6 5 11 11 H 1.08008 * 119.99995 * 324.93333 * 10 7 6 12 12 C 1.37878 * 120.00424 * 144.93479 * 10 7 6 13 13 N 1.31510 * 120.00449 * 179.66247 * 12 10 7 14 14 Si 1.86803 * 119.99579 * 359.66454 * 12 10 7 15 15 H 1.48492 * 109.47226 * 269.95871 * 14 12 10 16 16 H 1.48499 * 109.47194 * 29.96389 * 14 12 10 17 17 H 1.48503 * 109.46990 * 149.95796 * 14 12 10 18 18 C 1.38610 * 117.96943 * 359.46871 * 4 3 2 19 19 C 1.50702 * 120.08017 * 180.29276 * 18 4 3 20 20 N 1.31936 * 119.84720 * 0.27609 * 18 4 3 21 21 N 1.28348 * 122.18152 * 359.97438 * 20 18 4 22 22 H 1.08996 * 109.47310 * 270.25594 * 1 2 3 23 23 H 1.09003 * 109.47136 * 30.25469 * 1 2 3 24 24 H 1.08997 * 109.47523 * 150.25808 * 1 2 3 25 25 H 1.07997 * 121.01455 * 0.02732 * 3 2 1 26 26 H 1.09009 * 109.47134 * 139.72278 * 5 4 3 27 27 H 1.09000 * 109.47375 * 19.72102 * 5 4 3 28 28 H 1.00904 * 110.99838 * 56.05149 * 6 5 4 29 29 H 1.08995 * 109.47247 * 54.34035 * 9 7 6 30 30 H 1.09005 * 109.46630 * 174.34266 * 9 7 6 31 31 H 1.09003 * 109.47263 * 294.34165 * 9 7 6 32 32 H 0.97004 * 120.00049 * 180.02562 * 13 12 10 33 33 H 1.08999 * 109.46952 * 90.00225 * 19 18 4 34 34 H 1.08994 * 109.47388 * 210.00103 * 19 18 4 35 35 H 1.09002 * 109.46756 * 330.00482 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2017 1.1995 0.0000 4 6 3.5895 1.1484 -0.0061 5 6 4.4129 2.4105 -0.0123 6 7 4.8815 2.6827 -1.3777 7 6 5.6891 3.9090 -1.4225 8 1 5.2926 4.6314 -0.7090 9 6 7.1386 3.5784 -1.0614 10 6 5.6380 4.4938 -2.8104 11 1 5.5955 3.8414 -3.6701 12 6 5.6454 5.8617 -2.9829 13 7 5.6075 6.3720 -4.1943 14 14 5.7094 6.9902 -1.4956 15 1 4.3273 7.3040 -1.0525 16 1 6.4416 6.3159 -0.3937 17 1 6.4104 8.2481 -1.8585 18 6 4.1941 -0.0988 -0.0004 19 6 5.6970 -0.2097 0.0001 20 7 3.4508 -1.1889 0.0049 21 7 2.1681 -1.1416 0.0056 22 1 -0.3634 0.0046 1.0276 23 1 -0.3633 0.8877 -0.5178 24 1 -0.3634 -0.8922 -0.5098 25 1 1.6796 2.1449 0.0004 26 1 5.2711 2.2877 0.6486 27 1 3.8029 3.2441 0.3355 28 1 4.1066 2.7367 -2.0218 29 1 7.5028 2.7833 -1.7118 30 1 7.7571 4.4665 -1.1918 31 1 7.1887 3.2500 -0.0232 32 1 5.6131 7.3344 -4.3157 33 1 6.0594 -0.2318 1.0278 34 1 5.9939 -1.1263 -0.5096 35 1 6.1248 0.6489 -0.5176 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930868323.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:17 Heat of formation + Delta-G solvation = 20.774924 kcal Electronic energy + Delta-G solvation = -16356.595142 eV Core-core repulsion = 13774.616371 eV Total energy + Delta-G solvation = -2581.978771 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.13226 -38.17607 -35.67173 -35.11819 -33.94271 -31.39859 -30.33924 -27.83451 -27.31752 -26.39258 -24.12492 -22.34333 -21.55016 -19.17270 -18.70546 -17.16950 -16.67919 -16.41582 -15.81251 -15.70746 -15.33626 -14.64178 -14.42207 -14.27427 -14.12294 -13.83250 -13.48427 -13.24051 -13.19096 -12.97219 -12.89501 -12.60399 -12.51939 -12.19254 -11.80821 -11.70686 -11.11834 -10.86539 -10.79886 -10.58265 -10.33746 -9.16422 -8.30547 -6.37275 -0.21208 -0.03452 1.32985 1.37280 1.47384 2.32636 2.48972 3.02968 3.07348 3.37637 3.51557 3.68447 3.74610 3.91462 4.20157 4.39908 4.48971 4.58194 4.65213 4.74368 4.76173 4.79301 4.91505 4.96532 4.98815 5.02656 5.14695 5.23154 5.31392 5.45597 5.52805 5.72794 5.99582 6.46479 6.64819 6.79122 7.32262 7.75599 8.86132 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.031554 B = 0.006202 C = 0.005656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.146332 B = 4513.470430 C = 4949.665202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.056 3.944 3 C -0.115 4.115 4 C -0.076 4.076 5 C 0.098 3.902 6 N -0.677 5.677 7 C 0.185 3.815 8 H 0.011 0.989 9 C -0.125 4.125 10 C -0.521 4.521 11 H 0.034 0.966 12 C 0.015 3.985 13 N -0.947 5.947 14 Si 0.941 3.059 15 H -0.269 1.269 16 H -0.239 1.239 17 H -0.289 1.289 18 C 0.077 3.923 19 C -0.102 4.102 20 N -0.279 5.279 21 N -0.281 5.281 22 H 0.098 0.902 23 H 0.098 0.902 24 H 0.080 0.920 25 H 0.173 0.827 26 H 0.097 0.903 27 H 0.048 0.952 28 H 0.336 0.664 29 H 0.047 0.953 30 H 0.036 0.964 31 H 0.053 0.947 32 H 0.266 0.734 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.488 -7.605 13.026 16.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.089 4.089 3 C -0.144 4.144 4 C -0.088 4.088 5 C -0.031 4.031 6 N -0.309 5.309 7 C 0.077 3.923 8 H 0.029 0.971 9 C -0.183 4.183 10 C -0.560 4.560 11 H 0.052 0.948 12 C -0.183 4.183 13 N -0.586 5.586 14 Si 0.764 3.236 15 H -0.194 1.194 16 H -0.162 1.162 17 H -0.216 1.216 18 C -0.069 4.069 19 C -0.160 4.160 20 N -0.119 5.119 21 N -0.122 5.122 22 H 0.117 0.883 23 H 0.117 0.883 24 H 0.099 0.901 25 H 0.190 0.810 26 H 0.115 0.885 27 H 0.067 0.933 28 H 0.153 0.847 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.987 -9.545 12.991 17.196 hybrid contribution -0.513 2.863 -0.081 2.910 sum -6.500 -6.682 12.910 15.923 Atomic orbital electron populations 1.20771 0.84918 1.04925 1.04722 1.23383 1.00687 0.89788 0.95059 1.22598 0.93814 1.00933 0.97047 1.21154 0.94845 0.96527 0.96226 1.20958 0.97764 0.91581 0.92811 1.60689 1.25933 1.38980 1.05259 1.19465 0.92021 0.86837 0.94005 0.97130 1.21805 0.96867 1.00119 0.99517 1.21276 1.50410 0.91719 0.92553 0.94802 1.25912 0.93990 0.99854 0.98553 1.70054 1.52069 1.12836 1.23675 0.85836 0.79186 0.78081 0.80460 1.19414 1.16214 1.21575 1.23060 0.99993 0.89611 0.94193 1.20799 0.86326 1.04748 1.04170 1.72833 0.99890 1.27963 1.11243 1.72767 1.01756 1.26490 1.11214 0.88348 0.88331 0.90123 0.81003 0.88523 0.93348 0.84691 0.93401 0.94508 0.92765 0.92485 0.88567 0.90424 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.52 10.20 71.24 0.73 -0.80 16 2 C 0.06 1.41 6.87 42.64 0.29 1.70 16 3 C -0.11 -2.78 9.56 22.51 0.22 -2.57 16 4 C -0.08 -2.10 5.44 -19.63 -0.11 -2.21 16 5 C 0.10 2.76 4.79 85.55 0.41 3.17 16 6 N -0.68 -24.48 5.72 -499.45 -2.86 -27.33 16 7 C 0.19 7.77 2.17 44.17 0.10 7.87 16 8 H 0.01 0.45 5.05 -2.39 -0.01 0.44 16 9 C -0.12 -4.73 9.32 71.98 0.67 -4.06 16 10 C -0.52 -27.90 8.84 25.60 0.23 -27.67 16 11 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 12 C 0.02 0.83 5.47 84.66 0.46 1.29 16 13 N -0.95 -57.01 13.96 21.45 0.30 -56.71 16 14 Si 0.94 41.20 26.83 68.60 1.84 43.04 16 15 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 16 H -0.24 -9.47 6.77 99.48 0.67 -8.80 16 17 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 18 C 0.08 2.29 6.87 42.63 0.29 2.58 16 19 C -0.10 -2.56 9.51 71.24 0.68 -1.89 16 20 N -0.28 -9.23 11.43 -47.62 -0.54 -9.77 16 21 N -0.28 -8.85 11.43 -47.62 -0.54 -9.39 16 22 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.10 1.18 8.09 -2.39 -0.02 1.17 16 24 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.17 3.15 8.06 -2.91 -0.02 3.13 16 26 H 0.10 2.49 6.79 -2.38 -0.02 2.47 16 27 H 0.05 1.28 7.96 -2.39 -0.02 1.26 16 28 H 0.34 13.00 8.34 -89.69 -0.75 12.25 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.04 1.44 7.97 -2.38 -0.02 1.42 16 31 H 0.05 1.67 7.60 -2.39 -0.02 1.66 16 32 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 33 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.09 2.53 6.51 -2.39 -0.02 2.52 16 Total: -1.00 -65.89 292.84 2.46 -63.43 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.31 Total: 19.31 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 3.96 Total: -22.57 kcal Atomic # 7 Polarization: -99.55 SS G_CDS: -3.65 Total: -103.20 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 1.84 Total: 43.04 kcal Total: -65.89 2.46 -63.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930868323.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.202 kcal (2) G-P(sol) polarization free energy of solvation -65.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds