Wall clock time and date at job start Mon Mar 30 2020 03:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47045 * 2 1 4 4 N 1.46498 * 109.46838 * 239.99916 * 2 1 3 5 5 C 1.46501 * 120.00229 * 66.02662 * 4 2 1 6 6 C 1.50696 * 109.47100 * 89.99716 * 5 4 2 7 7 H 1.07999 * 120.00272 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00182 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99387 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00159 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47065 * 60.00347 * 10 8 6 12 12 H 1.48508 * 109.46636 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47271 * 299.99514 * 10 8 6 14 14 C 1.39033 * 119.99904 * 246.02090 * 4 2 1 15 15 C 1.38833 * 119.66575 * 12.93803 * 14 4 2 16 16 C 1.39127 * 119.00370 * 179.71137 * 15 14 4 17 17 N 1.39199 * 120.82202 * 180.25873 * 16 15 14 18 18 C 1.39686 * 118.35164 * 0.54571 * 16 15 14 19 19 C 1.37730 * 119.24006 * 359.73257 * 18 16 15 20 20 N 1.32092 * 120.93101 * 359.97438 * 19 18 16 21 21 H 1.09000 * 109.47119 * 59.99925 * 1 2 3 22 22 H 1.08993 * 109.47226 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46853 * 300.00495 * 1 2 3 24 24 H 1.09000 * 109.47119 * 120.00074 * 2 1 3 25 25 H 1.09000 * 109.47699 * 60.00023 * 3 2 1 26 26 H 1.08999 * 109.47161 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47223 * 300.00011 * 3 2 1 28 28 H 1.08998 * 109.47154 * 210.00027 * 5 4 2 29 29 H 1.08996 * 109.46941 * 329.99615 * 5 4 2 30 30 H 0.97002 * 119.99388 * 180.02562 * 9 8 6 31 31 H 1.07998 * 120.49442 * 359.97438 * 15 14 4 32 32 H 0.96993 * 120.00167 * 180.29189 * 17 16 15 33 33 H 0.96996 * 119.99745 * 0.29604 * 17 16 15 34 34 H 1.08008 * 120.37923 * 179.75743 * 18 16 15 35 35 H 1.07996 * 119.53692 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 1.7765 -0.1179 -2.5227 6 6 2.9175 0.7948 -2.8915 7 1 3.7403 0.9346 -2.2061 8 6 2.9105 1.4521 -4.1035 9 7 1.9082 1.2822 -4.9379 10 14 4.3252 2.5829 -4.5609 11 1 5.5918 1.8080 -4.5804 12 1 4.0799 3.1635 -5.9056 13 1 4.4287 3.6757 -3.5608 14 6 2.7114 -1.8895 -1.0724 15 6 2.7071 -2.5636 0.1413 16 6 3.4002 -3.7652 0.2480 17 7 3.4167 -4.4751 1.4453 18 6 4.0840 -4.2385 -0.8743 19 6 4.0460 -3.5095 -2.0422 20 7 3.3737 -2.3747 -2.1127 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.6768 1.9564 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.7012 -0.9203 -3.2566 29 1 0.8465 0.4503 -2.5090 30 1 1.9035 1.7443 -5.7907 31 1 2.1703 -2.1633 0.9886 32 1 3.9073 -5.3095 1.5076 33 1 2.9376 -4.1354 2.2172 34 1 4.6360 -5.1657 -0.8268 35 1 4.5734 -3.8708 -2.9127 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043569270.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:34 Heat of formation + Delta-G solvation = 41.000892 kcal Electronic energy + Delta-G solvation = -16825.582241 eV Core-core repulsion = 14244.480534 eV Total energy + Delta-G solvation = -2581.101707 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.55081 -36.93599 -34.75214 -32.70866 -31.51918 -29.53656 -28.78364 -26.70659 -26.30702 -23.15731 -22.63440 -21.22564 -19.23013 -17.17472 -16.92006 -16.25462 -15.09663 -15.01552 -14.83286 -14.21846 -13.78662 -13.55770 -13.13821 -12.80193 -12.65739 -12.16838 -11.69086 -11.53892 -11.32483 -11.18473 -10.93470 -10.79420 -10.73090 -10.42000 -10.20047 -9.85395 -9.52454 -8.83678 -8.39144 -8.27822 -7.62041 -6.64776 -5.86825 -3.90743 2.09990 2.39056 3.39402 3.43452 3.47339 3.87367 4.13461 4.55461 4.77605 5.26496 5.42750 5.46053 5.66246 5.70417 5.74152 5.88266 5.95909 6.10311 6.17671 6.28756 6.36547 6.46897 6.53003 6.65262 6.73266 7.01405 7.13952 7.25228 7.58616 7.73658 7.91805 8.00817 8.18566 8.43753 8.53697 9.10432 9.26301 9.71506 11.18328 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024237 B = 0.008367 C = 0.006955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.967165 B = 3345.531388 C = 4024.661736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.149 3.851 3 C -0.154 4.154 4 N -0.586 5.586 5 C 0.259 3.741 6 C -0.504 4.504 7 H 0.055 0.945 8 C 0.058 3.942 9 N -0.900 5.900 10 Si 0.891 3.109 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.280 1.280 14 C 0.450 3.550 15 C -0.337 4.337 16 C 0.277 3.723 17 N -0.874 5.874 18 C -0.328 4.328 19 C 0.182 3.818 20 N -0.547 5.547 21 H 0.065 0.935 22 H 0.051 0.949 23 H 0.056 0.944 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.040 0.960 29 H 0.027 0.973 30 H 0.260 0.740 31 H 0.119 0.881 32 H 0.395 0.605 33 H 0.394 0.606 34 H 0.114 0.886 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.279 -7.692 12.082 14.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.044 3.956 3 C -0.212 4.212 4 N -0.294 5.294 5 C 0.140 3.860 6 C -0.543 4.543 7 H 0.073 0.927 8 C -0.142 4.142 9 N -0.541 5.541 10 Si 0.720 3.280 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.205 1.205 14 C 0.214 3.786 15 C -0.368 4.368 16 C 0.165 3.835 17 N -0.413 5.413 18 C -0.357 4.357 19 C 0.021 3.979 20 N -0.266 5.266 21 H 0.084 0.916 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.097 0.903 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.137 0.863 32 H 0.223 0.777 33 H 0.222 0.778 34 H 0.132 0.868 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.045 -6.890 11.043 13.016 hybrid contribution 0.901 -0.046 0.766 1.184 sum 0.947 -6.936 11.809 13.728 Atomic orbital electron populations 1.22193 0.96170 1.01598 1.02058 1.20875 0.93339 0.93527 0.87841 1.22124 1.01596 0.95602 1.01888 1.47176 1.54878 1.19275 1.08091 1.19139 0.95850 0.93817 0.77212 1.21423 1.05977 1.25000 1.01890 0.92683 1.24895 0.95907 0.97171 0.96271 1.69928 1.31002 1.43642 1.09480 0.86670 0.83158 0.80863 0.77337 1.20371 1.21452 1.20546 1.18137 0.86524 0.86025 0.87957 1.20693 1.16118 0.99865 1.00125 1.17598 0.90422 0.89581 0.85901 1.42285 1.60285 1.27397 1.11368 1.21081 1.13920 1.05748 0.94936 1.22137 0.91782 0.88385 0.95572 1.67542 1.13470 1.14661 1.30953 0.91638 0.92998 0.92522 0.90856 0.93488 0.92607 0.90300 0.94190 0.95525 0.93003 0.86285 0.77734 0.77801 0.86754 0.83919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.27 37.16 0.34 -2.21 16 2 C 0.15 2.67 3.06 -67.93 -0.21 2.46 16 3 C -0.15 -2.78 8.34 37.16 0.31 -2.47 16 4 N -0.59 -12.88 2.50 -167.67 -0.42 -13.30 16 5 C 0.26 6.77 4.37 -5.19 -0.02 6.75 16 6 C -0.50 -14.15 7.85 -34.44 -0.27 -14.42 16 7 H 0.05 1.58 7.51 -52.49 -0.39 1.19 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 10 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 14 C 0.45 9.70 7.29 -155.00 -1.13 8.57 16 15 C -0.34 -6.01 9.10 -39.03 -0.36 -6.37 16 16 C 0.28 4.33 6.81 -83.64 -0.57 3.76 16 17 N -0.87 -9.57 9.08 32.51 0.30 -9.27 16 18 C -0.33 -5.23 9.99 -39.23 -0.39 -5.62 16 19 C 0.18 3.37 11.16 -17.63 -0.20 3.18 16 20 N -0.55 -12.46 9.31 -12.53 -0.12 -12.57 16 21 H 0.06 1.15 6.92 -51.93 -0.36 0.79 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 1.18 5.60 -51.93 -0.29 0.89 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.05 1.08 7.95 -51.93 -0.41 0.66 16 27 H 0.08 1.63 6.93 -51.93 -0.36 1.27 16 28 H 0.04 1.17 7.61 -51.93 -0.40 0.77 16 29 H 0.03 0.72 6.72 -51.93 -0.35 0.37 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.12 1.89 6.05 -52.49 -0.32 1.57 16 32 H 0.39 3.41 8.86 -40.82 -0.36 3.05 16 33 H 0.39 3.59 8.86 -40.82 -0.36 3.23 16 34 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 35 H 0.14 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 289.58 15.07 4.36 4.36 Total: -1.00 -31.91 289.58 -7.60 -39.51 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -4.85 Total: 5.02 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -2.59 Total: -4.81 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: 0.50 Total: -61.29 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.91 -7.60 -39.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043569270.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.508 kcal (2) G-P(sol) polarization free energy of solvation -31.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds