Wall clock time and date at job start Mon Mar 30 2020 03:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47045 * 2 1 4 4 N 1.46498 * 109.46838 * 239.99916 * 2 1 3 5 5 C 1.46501 * 120.00229 * 66.02662 * 4 2 1 6 6 C 1.50696 * 109.47100 * 89.99716 * 5 4 2 7 7 H 1.07999 * 120.00272 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00182 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99387 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00159 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47065 * 60.00347 * 10 8 6 12 12 H 1.48508 * 109.46636 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47271 * 299.99514 * 10 8 6 14 14 C 1.39033 * 119.99904 * 246.02090 * 4 2 1 15 15 C 1.38833 * 119.66575 * 12.93803 * 14 4 2 16 16 C 1.39127 * 119.00370 * 179.71137 * 15 14 4 17 17 N 1.39199 * 120.82202 * 180.25873 * 16 15 14 18 18 C 1.39686 * 118.35164 * 0.54571 * 16 15 14 19 19 C 1.37730 * 119.24006 * 359.73257 * 18 16 15 20 20 N 1.32092 * 120.93101 * 359.97438 * 19 18 16 21 21 H 1.09000 * 109.47119 * 59.99925 * 1 2 3 22 22 H 1.08993 * 109.47226 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46853 * 300.00495 * 1 2 3 24 24 H 1.09000 * 109.47119 * 120.00074 * 2 1 3 25 25 H 1.09000 * 109.47699 * 60.00023 * 3 2 1 26 26 H 1.08999 * 109.47161 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47223 * 300.00011 * 3 2 1 28 28 H 1.08998 * 109.47154 * 210.00027 * 5 4 2 29 29 H 1.08996 * 109.46941 * 329.99615 * 5 4 2 30 30 H 0.97002 * 119.99388 * 180.02562 * 9 8 6 31 31 H 1.07998 * 120.49442 * 359.97438 * 15 14 4 32 32 H 0.96993 * 120.00167 * 180.29189 * 17 16 15 33 33 H 0.96996 * 119.99745 * 0.29604 * 17 16 15 34 34 H 1.08008 * 120.37923 * 179.75743 * 18 16 15 35 35 H 1.07996 * 119.53692 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 1.7765 -0.1179 -2.5227 6 6 2.9175 0.7948 -2.8915 7 1 3.7403 0.9346 -2.2061 8 6 2.9105 1.4521 -4.1035 9 7 1.9082 1.2822 -4.9379 10 14 4.3252 2.5829 -4.5609 11 1 5.5918 1.8080 -4.5804 12 1 4.0799 3.1635 -5.9056 13 1 4.4287 3.6757 -3.5608 14 6 2.7114 -1.8895 -1.0724 15 6 2.7071 -2.5636 0.1413 16 6 3.4002 -3.7652 0.2480 17 7 3.4167 -4.4751 1.4453 18 6 4.0840 -4.2385 -0.8743 19 6 4.0460 -3.5095 -2.0422 20 7 3.3737 -2.3747 -2.1127 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.6768 1.9564 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.7012 -0.9203 -3.2566 29 1 0.8465 0.4503 -2.5090 30 1 1.9035 1.7443 -5.7907 31 1 2.1703 -2.1633 0.9886 32 1 3.9073 -5.3095 1.5076 33 1 2.9376 -4.1354 2.2172 34 1 4.6360 -5.1657 -0.8268 35 1 4.5734 -3.8708 -2.9127 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043569270.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:33 Heat of formation + Delta-G solvation = 19.690060 kcal Electronic energy + Delta-G solvation = -16826.506347 eV Core-core repulsion = 14244.480534 eV Total energy + Delta-G solvation = -2582.025814 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.97376 -38.42763 -35.98285 -34.82688 -32.98721 -31.13829 -30.17268 -28.36517 -27.86146 -24.96588 -24.16114 -22.65343 -20.71643 -18.65403 -18.40372 -18.10192 -16.66726 -16.41500 -16.28854 -15.88344 -15.36015 -14.92574 -14.54912 -14.30911 -14.22989 -13.91118 -13.25629 -13.21110 -12.91215 -12.75978 -12.61177 -12.44276 -12.22705 -12.13730 -12.02417 -11.51760 -11.41790 -10.51640 -10.46366 -9.86301 -8.78984 -8.36316 -7.93350 -6.17825 0.70487 1.03585 1.37831 1.41350 1.48427 2.36151 2.51308 3.06590 3.20349 3.34186 3.87472 4.10358 4.32550 4.35373 4.45103 4.54522 4.62995 4.82700 4.84733 4.97259 5.04176 5.04500 5.18614 5.24363 5.33849 5.36086 5.50583 5.56118 5.75411 5.88587 6.24736 6.49763 6.58360 6.82955 6.98588 7.08504 7.48105 7.80982 8.97943 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024237 B = 0.008367 C = 0.006955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.967165 B = 3345.531388 C = 4024.661736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.144 3.856 3 C -0.147 4.147 4 N -0.601 5.601 5 C 0.285 3.715 6 C -0.504 4.504 7 H 0.044 0.956 8 C 0.006 3.994 9 N -0.934 5.934 10 Si 0.955 3.045 11 H -0.280 1.280 12 H -0.281 1.281 13 H -0.268 1.268 14 C 0.419 3.581 15 C -0.337 4.337 16 C 0.283 3.717 17 N -0.849 5.849 18 C -0.314 4.314 19 C 0.159 3.841 20 N -0.608 5.608 21 H 0.037 0.963 22 H 0.053 0.947 23 H 0.093 0.907 24 H 0.100 0.900 25 H 0.087 0.913 26 H 0.036 0.964 27 H 0.042 0.958 28 H -0.003 1.003 29 H 0.009 0.991 30 H 0.262 0.738 31 H 0.140 0.860 32 H 0.411 0.589 33 H 0.408 0.592 34 H 0.150 0.850 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.124 -8.716 14.731 17.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.040 3.960 3 C -0.205 4.205 4 N -0.311 5.311 5 C 0.164 3.836 6 C -0.543 4.543 7 H 0.062 0.938 8 C -0.192 4.192 9 N -0.575 5.575 10 Si 0.780 3.220 11 H -0.205 1.205 12 H -0.207 1.207 13 H -0.193 1.193 14 C 0.184 3.816 15 C -0.368 4.368 16 C 0.168 3.832 17 N -0.390 5.390 18 C -0.343 4.343 19 C 0.001 3.999 20 N -0.328 5.328 21 H 0.056 0.944 22 H 0.073 0.927 23 H 0.112 0.888 24 H 0.117 0.883 25 H 0.105 0.895 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.015 0.985 29 H 0.027 0.973 30 H 0.071 0.929 31 H 0.158 0.842 32 H 0.241 0.759 33 H 0.238 0.762 34 H 0.168 0.832 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.913 -7.975 13.761 15.931 hybrid contribution 0.677 0.099 0.046 0.686 sum 1.590 -7.875 13.807 15.974 Atomic orbital electron populations 1.22118 0.94657 1.01887 1.02443 1.21160 0.94551 0.93082 0.87175 1.22046 1.00264 0.96110 1.02051 1.47060 1.56436 1.20280 1.07361 1.18444 0.94418 0.91678 0.79102 1.21581 1.05977 1.25037 1.01726 0.93818 1.25701 0.98378 0.98785 0.96297 1.70050 1.32811 1.44786 1.09873 0.85670 0.79711 0.79106 0.77482 1.20547 1.20651 1.19283 1.18487 0.87385 0.86373 0.89340 1.20791 1.16435 1.00382 0.99178 1.17660 0.89196 0.89039 0.87335 1.42198 1.59476 1.27258 1.10028 1.21391 1.12851 1.06177 0.93863 1.22500 0.91923 0.87988 0.97492 1.67419 1.15533 1.17056 1.32820 0.94392 0.92747 0.88846 0.88250 0.89477 0.94499 0.93843 0.98480 0.97302 0.92922 0.84243 0.75857 0.76246 0.83215 0.82515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.68 9.27 71.98 0.67 -4.02 16 2 C 0.14 5.05 3.06 44.99 0.14 5.19 16 3 C -0.15 -5.26 8.34 71.98 0.60 -4.66 16 4 N -0.60 -27.20 2.50 -684.39 -1.71 -28.91 16 5 C 0.29 15.79 4.37 85.63 0.37 16.16 16 6 C -0.50 -29.56 7.85 25.60 0.20 -29.36 16 7 H 0.04 2.61 7.51 -2.91 -0.02 2.58 16 8 C 0.01 0.34 5.46 84.65 0.46 0.80 16 9 N -0.93 -57.86 13.29 21.45 0.28 -57.57 16 10 Si 0.95 46.63 29.54 68.60 2.03 48.65 16 11 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 12 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 13 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 14 C 0.42 18.28 7.29 132.94 0.97 19.24 16 15 C -0.34 -11.38 9.10 22.63 0.21 -11.17 16 16 C 0.28 7.94 6.81 38.54 0.26 8.21 16 17 N -0.85 -14.70 9.08 -51.05 -0.46 -15.16 16 18 C -0.31 -9.19 9.99 22.50 0.22 -8.97 16 19 C 0.16 5.87 11.16 84.53 0.94 6.81 16 20 N -0.61 -28.50 9.31 -193.55 -1.80 -30.30 16 21 H 0.04 1.36 6.92 -2.39 -0.02 1.34 16 22 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.10 2.95 5.60 -2.39 -0.01 2.94 16 25 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.04 1.42 7.95 -2.39 -0.02 1.40 16 27 H 0.04 1.85 6.93 -2.39 -0.02 1.83 16 28 H 0.00 -0.18 7.61 -2.39 -0.02 -0.20 16 29 H 0.01 0.52 6.72 -2.39 -0.02 0.51 16 30 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 31 H 0.14 3.98 6.05 -2.91 -0.02 3.96 16 32 H 0.41 5.01 8.86 -92.71 -0.82 4.19 16 33 H 0.41 5.46 8.86 -92.71 -0.82 4.64 16 34 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 35 H 0.16 4.98 8.06 -2.91 -0.02 4.96 16 Total: -1.00 -73.17 289.58 2.85 -70.33 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -0.54 Total: 14.73 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 5.05 Total: -1.76 kcal Atomic # 7 Polarization: -128.26 SS G_CDS: -3.69 Total: -131.95 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -73.17 2.85 -70.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043569270.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.018 kcal (2) G-P(sol) polarization free energy of solvation -73.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds