Wall clock time and date at job start Mon Mar 30 2020 04:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46798 * 2 1 4 4 C 1.50699 * 109.47232 * 240.00289 * 2 1 3 5 5 H 1.08001 * 120.00007 * 240.00199 * 4 2 1 6 6 C 1.37872 * 120.00160 * 59.99539 * 4 2 1 7 7 N 1.31516 * 119.99910 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00342 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46779 * 60.00263 * 8 6 4 10 10 H 1.48501 * 109.47088 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46792 * 300.00462 * 8 6 4 12 12 N 1.46895 * 109.47106 * 120.00318 * 2 1 3 13 13 C 1.46903 * 111.00268 * 58.95289 * 12 2 1 14 14 C 1.46902 * 111.00027 * 294.99831 * 12 2 1 15 15 C 1.50699 * 109.47231 * 189.99768 * 14 12 2 16 16 C 1.37919 * 119.57399 * 95.00127 * 15 14 12 17 17 C 1.39461 * 119.06515 * 179.74788 * 16 15 14 18 18 N 1.39164 * 120.86231 * 180.23578 * 17 16 15 19 19 C 1.39490 * 118.26827 * 0.24938 * 17 16 15 20 20 C 1.37879 * 119.06973 * 0.02562 * 19 17 16 21 21 N 1.31982 * 119.58326 * 275.26965 * 15 14 12 22 22 H 1.08995 * 109.46626 * 59.99949 * 1 2 3 23 23 H 1.09000 * 109.46798 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.46835 * 299.99615 * 1 2 3 25 25 H 0.97003 * 120.00137 * 180.02562 * 7 6 4 26 26 H 1.08996 * 109.46971 * 296.04622 * 13 12 2 27 27 H 1.09001 * 109.46903 * 56.04812 * 13 12 2 28 28 H 1.09000 * 109.47162 * 176.04407 * 13 12 2 29 29 H 1.09005 * 109.46972 * 70.00003 * 14 12 2 30 30 H 1.08997 * 109.47103 * 310.00309 * 14 12 2 31 31 H 1.08002 * 120.47083 * 0.02767 * 16 15 14 32 32 H 0.96997 * 120.00328 * 359.97438 * 18 17 16 33 33 H 0.97005 * 119.99297 * 180.02562 * 18 17 16 34 34 H 1.07994 * 120.46804 * 179.97438 * 19 17 16 35 35 H 1.08001 * 119.57703 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6033 8 14 2.3214 -1.1202 -4.0080 9 1 1.8259 -2.5200 -4.0078 10 1 1.8269 -0.4197 -5.2204 11 1 3.8064 -1.1208 -4.0082 12 7 2.0197 -0.6925 1.1994 13 6 1.5284 -2.0762 1.2459 14 6 1.6488 0.0391 2.4180 15 6 2.3679 -0.5573 3.6005 16 6 3.5585 -0.0040 4.0230 17 6 4.2123 -0.5610 5.1217 18 7 5.4130 -0.0296 5.5828 19 6 3.6316 -1.6649 5.7462 20 6 2.4416 -2.1616 5.2580 21 7 1.8532 -1.6057 4.2152 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 0.7089 1.1614 -3.4844 26 1 0.4421 -2.0731 1.3347 27 1 1.8168 -2.5951 0.3317 28 1 1.9618 -2.5869 2.1057 29 1 0.5723 -0.0346 2.5726 30 1 1.9298 1.0869 2.3125 31 1 3.9763 0.8516 3.5131 32 1 5.8060 0.7379 5.1386 33 1 5.8573 -0.4274 6.3479 34 1 4.1077 -2.1246 6.5996 35 1 1.9850 -3.0162 5.7349 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086134657.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:42 Heat of formation + Delta-G solvation = 42.686482 kcal Electronic energy + Delta-G solvation = -16482.595121 eV Core-core repulsion = 13901.566507 eV Total energy + Delta-G solvation = -2581.028614 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.97480 -37.05185 -35.20080 -32.88099 -31.29290 -29.59246 -28.45407 -26.73149 -25.07671 -23.91090 -22.88697 -21.21260 -19.12414 -17.35333 -16.84668 -16.02921 -15.47529 -15.18297 -14.90494 -14.35641 -13.90102 -13.49882 -13.39983 -13.15157 -12.45200 -12.36820 -11.54389 -11.42662 -11.20651 -10.93037 -10.84531 -10.66534 -10.57130 -10.40384 -9.93166 -9.82439 -9.05234 -8.87521 -8.65803 -8.32913 -7.93962 -7.04655 -5.95514 -3.98695 1.46968 1.79338 3.36749 3.40396 3.43893 3.71884 4.13792 4.47583 4.70702 4.96123 5.21582 5.35711 5.43232 5.52259 5.66748 5.94423 6.00866 6.19284 6.25697 6.42830 6.50650 6.65622 6.79129 6.91192 6.94990 7.08511 7.20932 7.34516 7.56410 7.60171 7.80176 7.89839 8.18257 8.44575 8.51541 8.66592 9.07034 9.65797 11.11628 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.038629 B = 0.005641 C = 0.005469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.672340 B = 4962.330877 C = 5118.734572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.211 3.789 3 H 0.039 0.961 4 C -0.498 4.498 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.528 5.528 13 C 0.039 3.961 14 C 0.098 3.902 15 C 0.191 3.809 16 C -0.231 4.231 17 C 0.246 3.754 18 N -0.869 5.869 19 C -0.265 4.265 20 C 0.136 3.864 21 N -0.518 5.518 22 H 0.087 0.913 23 H 0.031 0.969 24 H 0.008 0.992 25 H 0.260 0.740 26 H 0.018 0.982 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.130 0.870 32 H 0.400 0.600 33 H 0.397 0.603 34 H 0.123 0.877 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.515 -1.812 15.272 16.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.105 3.895 3 H 0.057 0.943 4 C -0.536 4.536 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.252 5.252 13 C -0.110 4.110 14 C -0.031 4.031 15 C 0.055 3.945 16 C -0.257 4.257 17 C 0.133 3.867 18 N -0.409 5.409 19 C -0.291 4.291 20 C -0.021 4.021 21 N -0.231 5.231 22 H 0.106 0.894 23 H 0.050 0.950 24 H 0.027 0.973 25 H 0.070 0.930 26 H 0.036 0.964 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.148 0.852 32 H 0.229 0.771 33 H 0.226 0.774 34 H 0.141 0.859 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.124 -2.053 14.752 15.751 hybrid contribution 0.628 0.063 -0.318 0.707 sum 5.751 -1.990 14.434 15.665 Atomic orbital electron populations 1.22401 1.00775 0.99515 1.00455 1.19330 0.89857 0.94492 0.85839 0.94332 1.21081 1.30488 1.12408 0.89643 0.92016 1.24915 0.95285 0.95152 0.98921 1.69881 1.37113 1.23075 1.23413 0.86585 0.79162 0.79644 0.82141 1.20376 1.21430 1.20312 1.62385 1.59449 1.02344 1.01031 1.22220 0.97092 0.90614 1.01071 1.20967 0.96948 0.97227 0.87948 1.21101 0.90702 0.89426 0.93299 1.21392 0.98869 1.05701 0.99710 1.17985 0.85879 0.91258 0.91573 1.42340 1.23809 1.37356 1.37363 1.21447 1.00969 1.01008 1.05648 1.22401 0.91135 0.97154 0.91448 1.67629 1.35308 1.10889 1.09318 0.89416 0.94992 0.97317 0.93018 0.96384 0.91356 0.93184 0.93588 0.90265 0.85167 0.77103 0.77442 0.85859 0.83460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.28 8.28 37.16 0.31 -3.97 16 2 C 0.21 5.41 2.34 -68.86 -0.16 5.25 16 3 H 0.04 1.07 8.03 -51.93 -0.42 0.65 16 4 C -0.50 -13.84 7.88 -34.44 -0.27 -14.11 16 5 H 0.06 1.73 6.77 -52.49 -0.36 1.38 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.68 11.32 55.43 0.63 -25.05 16 8 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.53 -11.94 4.73 -237.73 -1.13 -13.07 16 13 C 0.04 0.84 8.48 60.07 0.51 1.35 16 14 C 0.10 1.92 4.71 -4.98 -0.02 1.89 16 15 C 0.19 3.38 5.70 -82.64 -0.47 2.91 16 16 C -0.23 -3.55 9.60 -39.24 -0.38 -3.92 16 17 C 0.25 3.16 6.81 -83.61 -0.57 2.59 16 18 N -0.87 -7.76 9.08 32.53 0.30 -7.46 16 19 C -0.26 -3.26 10.00 -39.25 -0.39 -3.66 16 20 C 0.14 1.89 11.17 -17.61 -0.20 1.69 16 21 N -0.52 -8.95 8.82 -9.57 -0.08 -9.04 16 22 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 23 H 0.03 0.78 6.47 -51.93 -0.34 0.44 16 24 H 0.01 0.18 6.75 -51.93 -0.35 -0.17 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.02 0.39 6.51 -51.93 -0.34 0.05 16 27 H 0.07 1.57 6.41 -51.93 -0.33 1.23 16 28 H 0.05 1.03 6.33 -51.93 -0.33 0.70 16 29 H 0.05 0.93 6.94 -51.93 -0.36 0.57 16 30 H 0.08 1.47 7.90 -51.93 -0.41 1.06 16 31 H 0.13 1.87 8.06 -52.49 -0.42 1.44 16 32 H 0.40 3.04 8.86 -40.82 -0.36 2.68 16 33 H 0.40 2.60 8.86 -40.82 -0.36 2.23 16 34 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 35 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 283.49 15.07 4.27 4.27 Total: -1.00 -30.69 283.49 -7.45 -38.14 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -4.67 Total: 4.06 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -1.74 Total: -8.46 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.29 Total: -54.62 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.69 -7.45 -38.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086134657.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.827 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds