Wall clock time and date at job start Mon Mar 30 2020 03:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47310 * 2 1 4 4 N 1.46905 * 109.47027 * 119.99792 * 2 1 3 5 5 C 1.50703 * 109.47072 * 239.99645 * 2 1 3 6 6 C 1.38277 * 119.53196 * 124.72494 * 5 2 1 7 7 C 1.38495 * 119.23514 * 179.79199 * 6 5 2 8 8 C 1.39307 * 118.36337 * 0.47656 * 7 6 5 9 9 N 1.39703 * 120.49457 * 179.72698 * 8 7 6 10 10 C 1.46500 * 120.00327 * 0.02562 * 9 8 7 11 11 C 1.46512 * 119.99997 * 180.02562 * 9 8 7 12 12 C 1.50699 * 109.47060 * 89.99472 * 11 9 8 13 13 H 1.07996 * 120.00468 * 0.02562 * 12 11 9 14 14 C 1.37879 * 119.99535 * 179.97438 * 12 11 9 15 15 N 1.31517 * 120.00053 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99705 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47541 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47258 * 120.00199 * 16 14 12 19 19 H 1.48498 * 109.47102 * 239.99854 * 16 14 12 20 20 C 1.38895 * 119.01282 * 359.74929 * 8 7 6 21 21 N 1.31822 * 120.65775 * 0.02562 * 20 8 7 22 22 H 1.09002 * 109.47389 * 300.00147 * 1 2 3 23 23 H 1.08999 * 109.47105 * 60.00380 * 1 2 3 24 24 H 1.08996 * 109.47310 * 179.97438 * 1 2 3 25 25 H 1.00901 * 110.99869 * 296.04819 * 4 2 1 26 26 H 1.00896 * 110.99543 * 59.99942 * 4 2 1 27 27 H 1.07997 * 120.38322 * 0.02562 * 6 5 2 28 28 H 1.08003 * 120.81723 * 180.22779 * 7 6 5 29 29 H 1.09001 * 109.46740 * 90.00113 * 10 9 8 30 30 H 1.08999 * 109.47405 * 210.00034 * 10 9 8 31 31 H 1.09007 * 109.46721 * 330.00521 * 10 9 8 32 32 H 1.08996 * 109.46848 * 210.00022 * 11 9 8 33 33 H 1.08997 * 109.46786 * 329.99761 * 11 9 8 34 34 H 0.96998 * 119.99432 * 180.02562 * 15 14 12 35 35 H 1.08003 * 119.67071 * 179.97438 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0323 -0.7105 -1.2304 6 6 2.9057 -0.0613 -2.0836 7 6 3.3669 -0.7216 -3.2103 8 6 2.9206 -2.0201 -3.4454 9 7 3.3528 -2.7252 -4.5713 10 6 4.2827 -2.0999 -5.5150 11 6 2.8761 -4.0902 -4.8084 12 6 1.6147 -4.0459 -5.6319 13 1 1.2090 -3.0961 -5.9475 14 6 0.9794 -5.2180 -5.9832 15 7 1.4743 -6.3747 -5.6001 16 14 -0.5837 -5.1631 -7.0045 17 1 -0.9297 -3.7505 -7.3047 18 1 -0.3711 -5.9019 -8.2751 19 1 -1.6935 -5.7934 -6.2453 20 6 2.0391 -2.6031 -2.5441 21 7 1.6285 -1.9403 -1.4812 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.7502 -0.1989 2.0373 26 1 1.6961 -1.6479 1.2228 27 1 3.2274 0.9477 -1.8718 28 1 4.0524 -0.2401 -3.8919 29 1 5.3073 -2.3155 -5.2121 30 1 4.1081 -2.4976 -6.5147 31 1 4.1245 -1.0214 -5.5202 32 1 3.6400 -4.6540 -5.3438 33 1 2.6698 -4.5739 -3.8536 34 1 1.0275 -7.1992 -5.8477 35 1 1.6861 -3.6091 -2.7163 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000148172167.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:12 Heat of formation + Delta-G solvation = 34.762936 kcal Electronic energy + Delta-G solvation = -16363.097747 eV Core-core repulsion = 13781.725542 eV Total energy + Delta-G solvation = -2581.372205 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.76151 -36.75996 -34.90774 -32.81760 -31.50436 -29.62152 -28.19114 -28.04156 -25.36871 -23.35617 -22.94226 -21.07019 -19.93934 -16.94415 -16.61679 -16.07378 -15.68859 -14.88113 -14.47289 -14.14364 -13.84401 -13.46771 -13.39117 -12.99909 -12.68605 -12.48577 -12.32097 -12.18690 -11.46563 -11.35690 -11.23625 -10.91921 -10.81947 -10.61495 -10.15696 -9.98033 -9.34045 -8.87088 -8.82106 -8.55915 -8.48880 -6.60310 -6.09087 -4.23075 1.89535 2.09184 3.23067 3.31493 3.35778 3.99724 4.35886 4.44575 4.87429 4.99114 5.09093 5.17113 5.39421 5.44669 5.50759 5.65174 5.73956 5.85194 5.95830 6.00598 6.05897 6.23448 6.31896 6.35454 6.71479 6.79756 6.89986 7.21659 7.25122 7.36317 7.61459 7.74711 8.05418 8.11756 8.26947 8.78125 8.85408 9.44380 10.90739 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.026582 B = 0.006578 C = 0.005805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.106405 B = 4255.843391 C = 4821.867130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.154 3.846 3 H 0.082 0.918 4 N -0.841 5.841 5 C 0.042 3.958 6 C -0.112 4.112 7 C -0.184 4.184 8 C 0.192 3.808 9 N -0.607 5.607 10 C 0.097 3.903 11 C 0.247 3.753 12 C -0.535 4.535 13 H 0.060 0.940 14 C 0.063 3.937 15 N -0.893 5.893 16 Si 0.897 3.103 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.282 1.282 20 C 0.038 3.962 21 N -0.440 5.440 22 H 0.048 0.952 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.334 0.666 26 H 0.348 0.652 27 H 0.120 0.880 28 H 0.124 0.876 29 H 0.038 0.962 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.034 0.966 33 H 0.037 0.963 34 H 0.264 0.736 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.023 11.084 6.873 13.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.042 3.958 3 H 0.100 0.900 4 N -0.370 5.370 5 C -0.097 4.097 6 C -0.133 4.133 7 C -0.215 4.215 8 C 0.082 3.918 9 N -0.312 5.312 10 C -0.047 4.047 11 C 0.127 3.873 12 C -0.574 4.574 13 H 0.078 0.922 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.724 3.276 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.127 4.127 21 N -0.149 5.149 22 H 0.067 0.933 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.146 0.854 26 H 0.161 0.839 27 H 0.137 0.863 28 H 0.142 0.858 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.233 10.495 6.945 12.781 hybrid contribution -1.289 0.223 -1.148 1.741 sum 0.944 10.718 5.797 12.222 Atomic orbital electron populations 1.22548 0.97180 1.02899 1.01203 1.20002 0.92106 0.96120 0.87533 0.90018 1.58895 1.67463 1.07144 1.03520 1.20406 0.99796 0.92245 0.97254 1.21453 0.97339 0.99866 0.94641 1.20959 1.05832 0.94457 1.00258 1.18978 0.93038 0.91372 0.88460 1.47096 1.46700 1.16419 1.20975 1.21517 0.91952 0.97416 0.93863 1.19361 0.94686 0.75947 0.97268 1.21580 1.09216 0.92921 1.33648 0.92185 1.24959 0.97742 0.95225 0.96022 1.69935 1.39981 0.97503 1.45719 0.86455 0.83028 0.78188 0.79889 1.19767 1.20888 1.20756 1.22512 0.98230 1.01058 0.90874 1.67147 1.21857 1.07634 1.18232 0.93285 0.92438 0.91515 0.85412 0.83870 0.86250 0.85783 0.94319 0.91120 0.92715 0.94810 0.94513 0.92580 0.82056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 9.34 37.16 0.35 -1.90 16 2 C 0.15 2.08 3.67 -68.86 -0.25 1.83 16 3 H 0.08 0.97 7.86 -51.93 -0.41 0.56 16 4 N -0.84 -10.68 9.22 -5.65 -0.05 -10.73 16 5 C 0.04 0.72 5.74 -82.57 -0.47 0.24 16 6 C -0.11 -1.80 9.70 -39.47 -0.38 -2.18 16 7 C -0.18 -3.19 9.30 -39.09 -0.36 -3.55 16 8 C 0.19 3.87 6.57 -83.63 -0.55 3.33 16 9 N -0.61 -12.68 2.99 -180.86 -0.54 -13.22 16 10 C 0.10 1.63 10.22 59.85 0.61 2.24 16 11 C 0.25 6.05 4.93 -5.19 -0.03 6.03 16 12 C -0.53 -14.35 9.39 -34.44 -0.32 -14.67 16 13 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -25.29 13.29 55.43 0.74 -24.56 16 16 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C 0.04 0.81 10.38 -17.31 -0.18 0.63 16 21 N -0.44 -8.57 9.80 -9.30 -0.09 -8.66 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.07 0.95 7.94 -51.93 -0.41 0.53 16 25 H 0.33 3.29 9.07 -39.29 -0.36 2.93 16 26 H 0.35 4.70 8.93 -39.29 -0.35 4.34 16 27 H 0.12 1.54 7.94 -52.49 -0.42 1.12 16 28 H 0.12 1.85 6.27 -52.48 -0.33 1.52 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 31 H 0.05 0.81 6.25 -51.93 -0.32 0.48 16 32 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.04 0.95 6.22 -51.93 -0.32 0.63 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.16 3.68 6.16 -52.48 -0.32 3.36 16 LS Contribution 294.17 15.07 4.43 4.43 Total: -1.00 -28.99 294.17 -7.12 -36.11 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -4.90 Total: 6.88 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -1.69 Total: -6.39 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.05 Total: -57.16 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.99 -7.12 -36.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148172167.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.875 kcal (2) G-P(sol) polarization free energy of solvation -28.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds