Wall clock time and date at job start Mon Mar 30 2020 03:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 C 1.38817 * 119.98795 * 84.99989 * 4 2 1 6 6 C 1.38562 * 118.03341 * 180.02562 * 5 4 2 7 7 C 1.39470 * 117.90812 * 359.97438 * 6 5 4 8 8 N 1.39046 * 120.15875 * 179.97438 * 7 6 5 9 9 C 1.46501 * 120.00243 * 4.99957 * 8 7 6 10 10 C 1.46508 * 120.00115 * 185.00448 * 8 7 6 11 11 C 1.50691 * 109.47224 * 89.99683 * 10 8 7 12 12 H 1.08002 * 120.00274 * 0.02562 * 11 10 8 13 13 C 1.37881 * 120.00092 * 179.97438 * 11 10 8 14 14 N 1.31513 * 119.99796 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00238 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46701 * 60.00497 * 15 13 11 17 17 H 1.48496 * 109.47374 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47285 * 300.00704 * 15 13 11 19 19 N 1.32493 * 119.68669 * 0.02562 * 7 6 5 20 20 N 1.28347 * 122.06751 * 359.71705 * 19 7 6 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 25 25 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.07999 * 120.98118 * 359.97438 * 5 4 2 29 29 H 1.08008 * 121.04588 * 179.97438 * 6 5 4 30 30 H 1.09004 * 109.46696 * 90.00093 * 9 8 7 31 31 H 1.08996 * 109.47484 * 209.99999 * 9 8 7 32 32 H 1.08996 * 109.46891 * 330.00338 * 9 8 7 33 33 H 1.09001 * 109.47132 * 210.00240 * 10 8 7 34 34 H 1.08998 * 109.46914 * 329.99728 * 10 8 7 35 35 H 0.97004 * 119.99992 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 2.1648 -0.0177 -2.4262 6 6 2.6298 -0.7108 -3.5322 7 6 2.9363 -2.0622 -3.3744 8 7 3.4060 -2.8027 -4.4535 9 6 3.6840 -2.1408 -5.7306 10 6 3.6226 -4.2449 -4.3136 11 6 2.3601 -4.9806 -4.6817 12 1 1.4840 -4.4292 -4.9896 13 6 2.3237 -6.3578 -4.6265 14 7 3.3907 -7.0293 -4.2521 15 14 0.7585 -7.2698 -5.0821 16 1 0.3950 -6.9575 -6.4877 17 1 0.9781 -8.7316 -4.9404 18 1 -0.3423 -6.8453 -4.1802 19 7 2.7770 -2.6374 -2.1915 20 7 2.3503 -1.9880 -1.1700 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9562 0.8900 28 1 1.9121 1.0302 -2.4925 29 1 2.7510 -0.2199 -4.4867 30 1 4.7200 -1.8021 -5.7462 31 1 3.5191 -2.8433 -6.5475 32 1 3.0199 -1.2845 -5.8481 33 1 4.4310 -4.5567 -4.9750 34 1 3.8888 -4.4738 -3.2817 35 1 3.3650 -7.9982 -4.2128 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259319717.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:41 Heat of formation + Delta-G solvation = 55.323745 kcal Electronic energy + Delta-G solvation = -16385.721129 eV Core-core repulsion = 13805.240507 eV Total energy + Delta-G solvation = -2580.480621 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.42076 -36.81847 -35.22951 -32.84519 -31.93824 -29.97000 -28.00842 -27.16487 -25.67845 -23.94930 -23.19022 -21.44341 -20.12975 -17.02504 -16.78693 -16.37876 -15.42583 -14.67980 -14.56572 -14.21606 -13.95288 -13.54168 -13.48735 -12.81119 -12.71912 -12.14063 -12.10717 -11.95246 -11.50512 -11.18440 -11.16027 -10.92017 -10.88504 -10.55695 -10.29307 -10.16069 -9.97331 -9.65513 -9.25608 -8.75794 -8.41109 -6.95300 -6.00851 -4.07873 1.46033 1.84108 3.32441 3.37167 3.40043 3.70823 4.29330 4.45258 4.62972 4.88238 5.04938 5.20212 5.24643 5.31200 5.31801 5.43081 5.59502 5.66084 5.69521 5.81198 5.86852 5.89358 5.98417 6.12162 6.19578 6.26495 6.32083 6.56095 6.68412 7.07704 7.45677 7.82288 8.03504 8.17067 8.24614 8.94880 9.56097 9.66080 11.04932 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.029504 B = 0.006397 C = 0.005749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.805190 B = 4375.881966 C = 4869.600897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.029 4.029 3 C -0.145 4.145 4 C -0.013 4.013 5 C -0.079 4.079 6 C -0.200 4.200 7 C 0.352 3.648 8 N -0.583 5.583 9 C 0.096 3.904 10 C 0.250 3.750 11 C -0.528 4.528 12 H 0.054 0.946 13 C 0.064 3.936 14 N -0.893 5.893 15 Si 0.897 3.103 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.277 1.277 19 N -0.284 5.284 20 N -0.200 5.200 21 H 0.052 0.948 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.085 0.915 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.031 0.969 34 H 0.052 0.948 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.105 16.216 2.738 16.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.049 4.049 3 C -0.203 4.203 4 C -0.163 4.163 5 C -0.108 4.108 6 C -0.235 4.235 7 C 0.110 3.890 8 N -0.292 5.292 9 C -0.048 4.048 10 C 0.131 3.869 11 C -0.566 4.566 12 H 0.073 0.927 13 C -0.138 4.138 14 N -0.532 5.532 15 Si 0.725 3.275 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.202 1.202 19 N -0.137 5.137 20 N -0.043 5.043 21 H 0.071 0.929 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.104 0.896 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.154 0.846 29 H 0.156 0.844 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.795 14.476 3.433 14.985 hybrid contribution -1.006 0.701 -1.323 1.804 sum -2.801 15.177 2.109 15.576 Atomic orbital electron populations 1.21813 0.94350 1.02336 1.01401 1.19729 0.95592 0.94751 0.94863 1.21895 1.01232 0.95401 1.01758 1.22271 1.04771 0.93355 0.95883 1.21853 0.96055 1.00563 0.92311 1.21806 1.06606 0.94594 1.00468 1.20129 0.90117 0.88721 0.90079 1.47012 1.65212 1.09896 1.07121 1.21629 0.99205 0.97820 0.86193 1.19396 0.96554 0.71784 0.99172 1.21384 0.98107 0.91363 1.45795 0.92748 1.24903 0.96439 0.97375 0.95128 1.69918 1.28365 1.07597 1.47303 0.86582 0.83597 0.78572 0.78797 1.20353 1.21100 1.20222 1.73235 1.16915 1.28182 0.95361 1.72723 1.04416 1.06153 1.20959 0.92855 0.92378 0.92232 0.89618 0.92522 0.92492 0.92222 0.84600 0.84427 0.93743 0.90396 0.92505 0.95099 0.92994 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.18 37.16 0.34 -1.27 16 2 C -0.03 -0.37 3.25 -91.77 -0.30 -0.66 16 3 C -0.15 -1.39 8.63 37.15 0.32 -1.07 16 4 C -0.01 -0.22 5.87 -82.39 -0.48 -0.70 16 5 C -0.08 -1.17 9.26 -39.25 -0.36 -1.54 16 6 C -0.20 -3.33 9.35 -39.00 -0.36 -3.70 16 7 C 0.35 7.49 7.45 -154.77 -1.15 6.34 16 8 N -0.58 -12.69 2.97 -182.95 -0.54 -13.24 16 9 C 0.10 1.57 10.30 59.85 0.62 2.19 16 10 C 0.25 6.57 5.23 -5.19 -0.03 6.55 16 11 C -0.53 -15.03 9.39 -34.44 -0.32 -15.35 16 12 H 0.05 1.56 7.81 -52.49 -0.41 1.15 16 13 C 0.06 1.83 5.46 -17.82 -0.10 1.74 16 14 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 15 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 N -0.28 -6.78 10.27 31.23 0.32 -6.46 16 20 N -0.20 -4.23 11.41 33.61 0.38 -3.85 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.49 6.55 -51.93 -0.34 0.15 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.14 1.48 6.41 -52.49 -0.34 1.14 16 29 H 0.14 1.84 6.14 -52.48 -0.32 1.52 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 32 H 0.06 0.77 6.03 -51.93 -0.31 0.46 16 33 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 34 H 0.05 1.52 7.32 -51.93 -0.38 1.14 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 293.88 15.07 4.43 4.43 Total: -1.00 -32.41 293.88 -6.56 -38.98 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -5.03 Total: -3.54 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -1.83 Total: -7.48 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: 0.90 Total: -49.45 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.41 -6.56 -38.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259319717.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.299 kcal (2) G-P(sol) polarization free energy of solvation -32.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds