Wall clock time and date at job start Mon Mar 30 2020 03:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 C 1.38817 * 119.98795 * 84.99989 * 4 2 1 6 6 C 1.38562 * 118.03341 * 180.02562 * 5 4 2 7 7 C 1.39470 * 117.90812 * 359.97438 * 6 5 4 8 8 N 1.39046 * 120.15875 * 179.97438 * 7 6 5 9 9 C 1.46501 * 120.00243 * 4.99957 * 8 7 6 10 10 C 1.46508 * 120.00115 * 185.00448 * 8 7 6 11 11 C 1.50691 * 109.47224 * 89.99683 * 10 8 7 12 12 H 1.08002 * 120.00274 * 0.02562 * 11 10 8 13 13 C 1.37881 * 120.00092 * 179.97438 * 11 10 8 14 14 N 1.31513 * 119.99796 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00238 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46701 * 60.00497 * 15 13 11 17 17 H 1.48496 * 109.47374 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47285 * 300.00704 * 15 13 11 19 19 N 1.32493 * 119.68669 * 0.02562 * 7 6 5 20 20 N 1.28347 * 122.06751 * 359.71705 * 19 7 6 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 25 25 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.07999 * 120.98118 * 359.97438 * 5 4 2 29 29 H 1.08008 * 121.04588 * 179.97438 * 6 5 4 30 30 H 1.09004 * 109.46696 * 90.00093 * 9 8 7 31 31 H 1.08996 * 109.47484 * 209.99999 * 9 8 7 32 32 H 1.08996 * 109.46891 * 330.00338 * 9 8 7 33 33 H 1.09001 * 109.47132 * 210.00240 * 10 8 7 34 34 H 1.08998 * 109.46914 * 329.99728 * 10 8 7 35 35 H 0.97004 * 119.99992 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 2.1648 -0.0177 -2.4262 6 6 2.6298 -0.7108 -3.5322 7 6 2.9363 -2.0622 -3.3744 8 7 3.4060 -2.8027 -4.4535 9 6 3.6840 -2.1408 -5.7306 10 6 3.6226 -4.2449 -4.3136 11 6 2.3601 -4.9806 -4.6817 12 1 1.4840 -4.4292 -4.9896 13 6 2.3237 -6.3578 -4.6265 14 7 3.3907 -7.0293 -4.2521 15 14 0.7585 -7.2698 -5.0821 16 1 0.3950 -6.9575 -6.4877 17 1 0.9781 -8.7316 -4.9404 18 1 -0.3423 -6.8453 -4.1802 19 7 2.7770 -2.6374 -2.1915 20 7 2.3503 -1.9880 -1.1700 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9562 0.8900 28 1 1.9121 1.0302 -2.4925 29 1 2.7510 -0.2199 -4.4867 30 1 4.7200 -1.8021 -5.7462 31 1 3.5191 -2.8433 -6.5475 32 1 3.0199 -1.2845 -5.8481 33 1 4.4310 -4.5567 -4.9750 34 1 3.8888 -4.4738 -3.2817 35 1 3.3650 -7.9982 -4.2128 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259319717.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:41 Heat of formation + Delta-G solvation = 34.673591 kcal Electronic energy + Delta-G solvation = -16386.616586 eV Core-core repulsion = 13805.240507 eV Total energy + Delta-G solvation = -2581.376079 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.84236 -38.28016 -36.47301 -34.88089 -33.39442 -31.36954 -29.85659 -27.99790 -27.20529 -25.62565 -24.63966 -23.00667 -21.32667 -18.76725 -18.31884 -18.18973 -16.74683 -16.47048 -16.13710 -15.39932 -15.19406 -15.00746 -14.83757 -14.22912 -13.86482 -13.73784 -13.34789 -13.14520 -13.01844 -12.84532 -12.60540 -12.49529 -12.16249 -12.09800 -11.91541 -11.79568 -11.45234 -11.18078 -10.85372 -10.63600 -10.16338 -8.64198 -8.12566 -6.35404 0.12479 0.46198 1.34273 1.38558 1.45845 2.18121 2.39815 2.87306 3.08330 3.41194 3.80843 3.86154 3.88684 4.19216 4.30787 4.35222 4.40577 4.61868 4.65429 4.79022 4.84973 4.88619 4.97013 5.00204 5.07293 5.16100 5.24448 5.27665 5.43724 5.51419 5.53144 5.66664 6.06225 6.28453 6.55290 6.76298 7.33611 8.20890 8.85581 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.029504 B = 0.006397 C = 0.005749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.805190 B = 4375.881966 C = 4869.600897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.032 4.032 3 C -0.139 4.139 4 C -0.003 4.003 5 C -0.068 4.068 6 C -0.187 4.187 7 C 0.325 3.675 8 N -0.601 5.601 9 C 0.093 3.907 10 C 0.270 3.730 11 C -0.538 4.538 12 H 0.047 0.953 13 C 0.010 3.990 14 N -0.927 5.927 15 Si 0.964 3.036 16 H -0.261 1.261 17 H -0.277 1.277 18 H -0.281 1.281 19 N -0.353 5.353 20 N -0.251 5.251 21 H 0.065 0.935 22 H 0.085 0.915 23 H 0.031 0.969 24 H 0.073 0.927 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.190 0.810 29 H 0.178 0.822 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.017 0.983 34 H 0.009 0.991 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.655 19.479 2.093 19.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.052 4.052 3 C -0.196 4.196 4 C -0.155 4.155 5 C -0.096 4.096 6 C -0.220 4.220 7 C 0.082 3.918 8 N -0.312 5.312 9 C -0.049 4.049 10 C 0.148 3.852 11 C -0.577 4.577 12 H 0.065 0.935 13 C -0.189 4.189 14 N -0.567 5.567 15 Si 0.788 3.212 16 H -0.186 1.186 17 H -0.202 1.202 18 H -0.207 1.207 19 N -0.203 5.203 20 N -0.091 5.091 21 H 0.084 0.916 22 H 0.104 0.896 23 H 0.050 0.950 24 H 0.091 0.909 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.207 0.793 29 H 0.195 0.805 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.035 0.965 34 H 0.027 0.973 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.345 17.759 2.803 18.287 hybrid contribution -0.540 -0.143 -1.002 1.148 sum -3.885 17.616 1.800 18.129 Atomic orbital electron populations 1.21794 0.93129 1.01173 1.03416 1.19927 0.96487 0.96362 0.92443 1.21877 1.00951 0.92914 1.03907 1.23112 1.01824 0.92193 0.98348 1.22430 0.93906 1.02638 0.90578 1.22225 1.04653 0.92397 1.02762 1.20476 0.91175 0.90726 0.89405 1.46858 1.66902 1.08255 1.09232 1.21849 1.01280 0.98262 0.83484 1.18753 0.95224 0.75246 0.95986 1.21638 0.98560 0.91952 1.45573 0.93479 1.25797 0.99756 0.98328 0.94987 1.70041 1.30455 1.07924 1.48270 0.85530 0.79119 0.77457 0.79046 1.18587 1.20169 1.20662 1.73049 1.19444 1.30783 0.97009 1.72614 1.06854 1.08685 1.20911 0.91611 0.89601 0.95003 0.90867 0.92984 0.90494 0.89989 0.79281 0.80488 0.91742 0.91348 0.89089 0.96548 0.97280 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.18 71.98 0.66 -2.11 16 2 C -0.03 -0.73 3.25 -11.54 -0.04 -0.77 16 3 C -0.14 -2.06 8.63 71.98 0.62 -1.44 16 4 C 0.00 -0.08 5.87 42.71 0.25 0.17 16 5 C -0.07 -1.75 9.26 22.49 0.21 -1.54 16 6 C -0.19 -5.70 9.35 22.64 0.21 -5.48 16 7 C 0.32 13.97 7.45 133.10 0.99 14.96 16 8 N -0.60 -26.67 2.97 -732.74 -2.18 -28.85 16 9 C 0.09 2.95 10.30 127.77 1.32 4.26 16 10 C 0.27 14.97 5.23 85.63 0.45 15.41 16 11 C -0.54 -31.78 9.39 25.60 0.24 -31.54 16 12 H 0.05 2.78 7.81 -2.91 -0.02 2.75 16 13 C 0.01 0.61 5.46 84.66 0.46 1.07 16 14 N -0.93 -57.30 13.29 21.45 0.28 -57.02 16 15 Si 0.96 46.08 29.54 68.60 2.03 48.11 16 16 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 19 N -0.35 -17.63 10.27 -55.11 -0.57 -18.20 16 20 N -0.25 -11.01 11.41 -47.56 -0.54 -11.55 16 21 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 24 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.08 0.85 6.55 -2.39 -0.02 0.83 16 27 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.19 2.86 6.41 -2.91 -0.02 2.84 16 29 H 0.18 3.85 6.14 -2.91 -0.02 3.83 16 30 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 32 H 0.09 2.18 6.03 -2.39 -0.01 2.16 16 33 H 0.02 0.94 8.07 -2.39 -0.02 0.92 16 34 H 0.01 0.57 7.32 -2.39 -0.02 0.56 16 35 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -76.53 293.88 5.47 -71.06 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: 1.07 Total: 3.44 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 5.37 Total: -7.00 kcal Atomic # 7 Polarization: -112.62 SS G_CDS: -3.00 Total: -115.62 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -76.53 5.47 -71.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259319717.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.738 kcal (2) G-P(sol) polarization free energy of solvation -76.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds